RNA–Protein interactions for RNA: ENST00000560013.5

TM2D3-209, Transcript of TM2 domain containing 3, humanhuman

TSL 2

Gene TM2D3, Length 1,868 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM2D3-209ENST00000560013 NISCHQ9Y2I1 1504 aa53.2■■■■■ 6.11
TM2D3-209ENST00000560013 CCDC180Q9P1Z9 1646 aa46.38■■■■■ 5.02
TM2D3-209ENST00000560013 ZCCHC6Q5VYS8 1495 aaKnown RBP44.68■■■■■ 4.74
TM2D3-209ENST00000560013 DCAF1Q9Y4B6 1507 aa43.98■■■■■ 4.63
TM2D3-209ENST00000560013 DCAF8L2P0C7V8 631 aa43.96■■■■■ 4.63
TM2D3-209ENST00000560013 ABCC9O60706 1549 aa43.81■■■■■ 4.6
TM2D3-209ENST00000560013 MYO15BQ96JP2 1530 aa43.45■■■■■ 4.55
TM2D3-209ENST00000560013 SHROOM4Q9ULL8 1493 aa43.41■■■■■ 4.54
TM2D3-209ENST00000560013 NACADO15069 1562 aa43.18■■■■■ 4.5
TM2D3-209ENST00000560013 RB1CC1Q8TDY2 1594 aa42.81■■■■■ 4.44
TM2D3-209ENST00000560013 SCRIBQ14160 1630 aa42.65■■■■■ 4.42
TM2D3-209ENST00000560013 UNC13AQ9UPW8 1703 aa42■■■■■ 4.31
TM2D3-209ENST00000560013 SUPT5HO00267 1087 aaKnown RBP41.81■■■■■ 4.28
TM2D3-209ENST00000560013 BICRAQ9NZM4 1560 aa41.52■■■■■ 4.24
TM2D3-209ENST00000560013 PABPN1Q86U42 306 aaKnown RBP eCLIP41.33■■■■■ 4.21
TM2D3-209ENST00000560013 CECR2Q9BXF3 1484 aa41.33■■■■■ 4.21
TM2D3-209ENST00000560013 RSF1Q96T23 1441 aaPredicted RBP41.28■■■■■ 4.2
TM2D3-209ENST00000560013 MROH2BQ7Z745 1585 aa41.1■■■■■ 4.17
TM2D3-209ENST00000560013 BAZ1AQ9NRL2 1556 aaPredicted RBP41.08■■■■■ 4.17
TM2D3-209ENST00000560013 SMARCA4P51532 1647 aa40.89■■■■■ 4.14
TM2D3-209ENST00000560013 WIZO95785 1651 aa40.79■■■■■ 4.12
TM2D3-209ENST00000560013 PEG3Q9GZU2 1588 aa40.39■■■■■ 4.06
TM2D3-209ENST00000560013 TOP2AP11388 1531 aaKnown RBP40.34■■■■■ 4.05
TM2D3-209ENST00000560013 EIF4G1Q04637 1599 aaKnown RBP40.26■■■■■ 4.04
TM2D3-209ENST00000560013 ATAD2BQ9ULI0 1458 aa40.2■■■■■ 4.03
TM2D3-209ENST00000560013 SMARCA2P51531 1590 aa40.19■■■■■ 4.02
TM2D3-209ENST00000560013 CHIC1Q5VXU3 224 aa40.05■■■■■ 4
TM2D3-209ENST00000560013 BAZ1BQ9UIG0 1483 aaKnown RBP39.98■■■■□ 3.99
TM2D3-209ENST00000560013 CCDC88BA6NC98 1476 aa39.94■■■■□ 3.98
TM2D3-209ENST00000560013 NCAPD3P42695 1498 aa39.85■■■■□ 3.97
TM2D3-209ENST00000560013 HMGXB3Q12766 1538 aa39.8■■■■□ 3.96
TM2D3-209ENST00000560013 CC2D2AQ9P2K1 1620 aa39.67■■■■□ 3.94
TM2D3-209ENST00000560013 TRIM41Q8WV44 630 aa39.32■■■■□ 3.89
TM2D3-209ENST00000560013 ABCC8Q09428 1581 aa39.11■■■■□ 3.85
TM2D3-209ENST00000560013 CFTRP13569 1480 aa38.98■■■■□ 3.83
TM2D3-209ENST00000560013 WRNQ14191 1432 aaPredicted RBP eCLIP38.86■■■■□ 3.81
TM2D3-209ENST00000560013 CADPSQ9ULU8 1353 aa38.84■■■■□ 3.81
TM2D3-209ENST00000560013 PRDM2Q13029 1718 aa38.84■■■■□ 3.81
TM2D3-209ENST00000560013 SYNJ1O43426 1573 aa38.69■■■■□ 3.78
TM2D3-209ENST00000560013 DNAJC5BQ9UF47 199 aa38.64■■■■□ 3.78
TM2D3-209ENST00000560013 FAM9AQ8IZU1 332 aaPredicted RBP38.59■■■■□ 3.77
TM2D3-209ENST00000560013 TOP2BQ02880 1626 aa38.55■■■■□ 3.76
TM2D3-209ENST00000560013 LOC105371045A0A1W2PR82 267 aa38.52■■■■□ 3.76
TM2D3-209ENST00000560013 BIVM-ERCC5R4GMW8 1640 aa38.51■■■■□ 3.76
TM2D3-209ENST00000560013 LAMC3Q9Y6N6 1575 aa38.51■■■■□ 3.75
TM2D3-209ENST00000560013 NESP48681 1621 aa38.48■■■■□ 3.75
TM2D3-209ENST00000560013 CUX1P39880 1505 aa38.43■■■■□ 3.74
TM2D3-209ENST00000560013 FANCD2Q9BXW9 1451 aa38.41■■■■□ 3.74
TM2D3-209ENST00000560013 SOGA1O94964 1423 aa38.39■■■■□ 3.74
TM2D3-209ENST00000560013 EEA1Q15075 1411 aa38.32■■■■□ 3.73
TM2D3-209ENST00000560013 RUSC2Q8N2Y8 1516 aa38.24■■■■□ 3.71
TM2D3-209ENST00000560013 PDS5BQ9NTI5 1447 aa38.2■■■■□ 3.71
TM2D3-209ENST00000560013 CEP164Q9UPV0 1460 aa38.16■■■■□ 3.7
TM2D3-209ENST00000560013 CSRNP3Q8WYN3 585 aa38.13■■■■□ 3.69
TM2D3-209ENST00000560013 DNMBPQ6XZF7 1577 aa38.07■■■■□ 3.69
TM2D3-209ENST00000560013 KIF21AQ7Z4S6 1674 aa38.05■■■■□ 3.68
TM2D3-209ENST00000560013 EHMT2Q96KQ7 1210 aa38.05■■■■□ 3.68
TM2D3-209ENST00000560013 FGD5Q6ZNL6 1462 aa38■■■■□ 3.67
TM2D3-209ENST00000560013 TOPBP1Q92547 1522 aa38■■■■□ 3.67
TM2D3-209ENST00000560013 URB2Q14146 1524 aaKnown RBP37.91■■■■□ 3.66
TM2D3-209ENST00000560013 KIF27Q86VH2 1401 aa37.87■■■■□ 3.65
TM2D3-209ENST00000560013 KIF21BO75037 1637 aa37.83■■■■□ 3.65
TM2D3-209ENST00000560013 POLA1P09884 1462 aaPredicted RBP37.81■■■■□ 3.64
TM2D3-209ENST00000560013 GOLGA3Q08378 1498 aa37.8■■■■□ 3.64
TM2D3-209ENST00000560013 CUX2O14529 1486 aa37.76■■■■□ 3.64
TM2D3-209ENST00000560013 MRC2Q9UBG0 1479 aa37.7■■■■□ 3.62
TM2D3-209ENST00000560013 RAD54L2Q9Y4B4 1467 aa37.69■■■■□ 3.62
TM2D3-209ENST00000560013 TNIKQ9UKE5 1360 aa37.69■■■■□ 3.62
TM2D3-209ENST00000560013 ABCA10Q8WWZ4 1543 aa37.67■■■■□ 3.62
TM2D3-209ENST00000560013 UBTFP17480 764 aaKnown RBP37.65■■■■□ 3.62
TM2D3-209ENST00000560013 PRXQ9BXM0 1461 aa37.62■■■■□ 3.61
TM2D3-209ENST00000560013 RAPGEF2Q9Y4G8 1499 aa37.6■■■■□ 3.61
TM2D3-209ENST00000560013 ERICH3Q5RHP9 1530 aa37.57■■■■□ 3.6
TM2D3-209ENST00000560013 ERCC6Q03468 1493 aa37.57■■■■□ 3.6
TM2D3-209ENST00000560013 WDR97A6NE52 1622 aa37.56■■■■□ 3.6
TM2D3-209ENST00000560013 IGF1RP08069 1367 aa37.54■■■■□ 3.6
TM2D3-209ENST00000560013 WDR62O43379 1518 aa37.49■■■■□ 3.59
TM2D3-209ENST00000560013 CEP162Q5TB80 1403 aa37.48■■■■□ 3.59
TM2D3-209ENST00000560013 TARBP1Q13395 1621 aaKnown RBP37.43■■■■□ 3.58
TM2D3-209ENST00000560013 THOC2Q8NI27 1593 aaKnown RBP37.38■■■■□ 3.57
TM2D3-209ENST00000560013 ABCA5Q8WWZ7 1642 aa37.36■■■■□ 3.57
TM2D3-209ENST00000560013 CARMIL1Q5VZK9 1371 aa37.35■■■■□ 3.57
TM2D3-209ENST00000560013 TDRD9Q8NDG6 1382 aaKnown RBP37.33■■■■□ 3.57
TM2D3-209ENST00000560013 GAPVD1Q14C86 1478 aa37.29■■■■□ 3.56
TM2D3-209ENST00000560013 CUL7Q14999 1698 aa37.26■■■■□ 3.56
TM2D3-209ENST00000560013 IFT140Q96RY7 1462 aa37.24■■■■□ 3.55
TM2D3-209ENST00000560013 CLIP1P30622 1438 aa37.19■■■■□ 3.54
TM2D3-209ENST00000560013 PBRM1Q86U86 1689 aa37.1■■■■□ 3.53
TM2D3-209ENST00000560013 AQRO60306 1485 aaKnown RBP eCLIP37.08■■■■□ 3.532e-6■■■■■ 26.9
TM2D3-209ENST00000560013 ZNF608Q9ULD9 1512 aaPredicted RBP37.03■■■■□ 3.52
TM2D3-209ENST00000560013 RANGAP1P46060 587 aaPredicted RBP37.02■■■■□ 3.52
TM2D3-209ENST00000560013 GRIN2BQ13224 1484 aa36.98■■■■□ 3.51
TM2D3-209ENST00000560013 EIF4G3O43432 1585 aaKnown RBP36.92■■■■□ 3.5
TM2D3-209ENST00000560013 FHAD1B1AJZ9 1412 aa36.88■■■■□ 3.49
TM2D3-209ENST00000560013 VPS8Q8N3P4 1428 aa36.87■■■■□ 3.49
TM2D3-209ENST00000560013 CTTNBP2Q8WZ74 1663 aa36.87■■■■□ 3.49
TM2D3-209ENST00000560013 ADAMTS12P58397 1594 aa36.87■■■■□ 3.49
TM2D3-209ENST00000560013 ARAP1Q96P48 1450 aa36.81■■■■□ 3.48
TM2D3-209ENST00000560013 ARHGAP35Q9NRY4 1499 aa36.81■■■■□ 3.48
TM2D3-209ENST00000560013 TRIM26Q12899 539 aaPredicted RBP36.79■■■■□ 3.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms