Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC12.1□□□□□ -0.474e-6■■■□□ 18.7
SUB1P53999 RAB10-201ENST00000264710 3535 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.777e-7■■■□□ 18.7
SUB1P53999 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC13.77□□□□□ -0.211e-6■■■□□ 18.7
SUB1P53999 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.441e-6■■■□□ 18.7
SUB1P53999 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.31e-7■■■□□ 18.7
SUB1P53999 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC15.13■□□□□ 0.011e-7■■■□□ 18.7
SUB1P53999 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC14.22□□□□□ -0.131e-7■■■□□ 18.7
SUB1P53999 HMBS-226ENST00000640813 1283 ntTSL 514.05□□□□□ -0.161e-7■■■□□ 18.7
SUB1P53999 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC13.99□□□□□ -0.171e-7■■■□□ 18.7
SUB1P53999 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC13.03□□□□□ -0.321e-7■■■□□ 18.7
SUB1P53999 HMBS-224ENST00000546226 2112 ntTSL 212.34□□□□□ -0.431e-7■■■□□ 18.7
SUB1P53999 HMBS-202ENST00000392841 1411 ntTSL 1 (best) BASIC9.97□□□□□ -0.811e-7■■■□□ 18.7
SUB1P53999 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC9.9□□□□□ -0.821e-7■■■□□ 18.7
SUB1P53999 HMBS-217ENST00000543543 1796 ntTSL 58.84□□□□□ -11e-7■■■□□ 18.7
SUB1P53999 GANAB-216ENST00000540933 3836 ntAPPRIS ALT2 TSL 1 (best) BASIC9.14□□□□□ -0.953e-7■■■□□ 18.6
SUB1P53999 GANAB-201ENST00000346178 3906 ntAPPRIS ALT2 TSL 1 (best) BASIC8.45□□□□□ -1.063e-7■■■□□ 18.6
SUB1P53999 GANAB-211ENST00000532402 3718 ntTSL 1 (best)7.53□□□□□ -1.23e-7■■■□□ 18.6
SUB1P53999 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.351e-6■■■□□ 18.6
SUB1P53999 TUBA1C-203ENST00000548470 1105 ntTSL 29.05□□□□□ -0.966e-9■■■□□ 18.6
SUB1P53999 CNBP-202ENST00000441626 1040 ntTSL 2 BASIC8.94□□□□□ -0.989e-9■■■□□ 18.6
SUB1P53999 SSRP1-202ENST00000293880 6296 ntTSL 214.62□□□□□ -0.074e-8■■■□□ 18.6
SUB1P53999 SSRP1-201ENST00000278412 2819 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.944e-8■■■□□ 18.6
SUB1P53999 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC13.65□□□□□ -0.221e-23■■■□□ 18.5
SUB1P53999 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.132e-6■■■□□ 18.5
SUB1P53999 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC15.58■□□□□ 0.082e-6■■■□□ 18.5
SUB1P53999 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.372e-6■■■□□ 18.5
SUB1P53999 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC12.28□□□□□ -0.442e-6■■■□□ 18.5
SUB1P53999 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.472e-6■■■□□ 18.5
SUB1P53999 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.482e-6■■■□□ 18.5
SUB1P53999 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC11.83□□□□□ -0.522e-6■■■□□ 18.5
SUB1P53999 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -09e-9■■■□□ 18.5
SUB1P53999 CD81-216ENST00000531840 5235 ntTSL 1 (best)16.17■□□□□ 0.184e-23■■■□□ 18.5
SUB1P53999 CD81-212ENST00000526072 1172 ntTSL 5 BASIC14.06□□□□□ -0.164e-23■■■□□ 18.5
SUB1P53999 CD81-204ENST00000468153 940 ntTSL 213.69□□□□□ -0.224e-23■■■□□ 18.5
SUB1P53999 CD81-206ENST00000481386 898 ntTSL 213.69□□□□□ -0.224e-23■■■□□ 18.5
SUB1P53999 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.544e-23■■■□□ 18.5
SUB1P53999 CD81-209ENST00000492627 886 ntTSL 3 BASIC10.93□□□□□ -0.664e-23■■■□□ 18.5
SUB1P53999 ADAMTSL4-202ENST00000369038 4167 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.668e-7■■■□□ 18.5
SUB1P53999 ALAS2-208ENST00000498636 959 ntTSL 310.31□□□□□ -0.767e-12■■■□□ 18.5
SUB1P53999 CCNG1-207ENST00000510097 564 ntTSL 411.56□□□□□ -0.561e-13■■■□□ 18.4
SUB1P53999 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.33e-6■■■□□ 18.4
SUB1P53999 AKR7A2-202ENST00000330072 1171 ntTSL 213.98□□□□□ -0.173e-6■■■□□ 18.4
SUB1P53999 RPL23-205ENST00000470646 333 ntTSL 39.89□□□□□ -0.832e-40■■■□□ 18.4
SUB1P53999 RPL23-202ENST00000378096 392 ntTSL 39.17□□□□□ -0.942e-40■■■□□ 18.4
SUB1P53999 RPL23-208ENST00000577760 3081 nt8.74□□□□□ -1.012e-40■■■□□ 18.4
SUB1P53999 RPL23-209ENST00000584056 549 ntTSL 28.54□□□□□ -1.042e-40■■■□□ 18.4
SUB1P53999 UBR4-203ENST00000375225 1533 ntTSL 2 BASIC10.02□□□□□ -0.813e-8■■■□□ 18.4
SUB1P53999 UBR4-202ENST00000375224 3475 ntTSL 2 BASIC6.65□□□□□ -1.353e-8■■■□□ 18.4
SUB1P53999 USP48-208ENST00000479177 686 ntTSL 35.2□□□□□ -1.586e-17■■■□□ 18.4
SUB1P53999 CCAR1-212ENST00000540210 3415 ntTSL 1 (best)2.93□□□□□ -1.946e-17■■■□□ 18.4
SUB1P53999 RHOT2-224ENST00000569943 635 ntTSL 311.08□□□□□ -0.641e-6■■■□□ 18.4
SUB1P53999 CS-202ENST00000542324 1893 ntAPPRIS ALT2 TSL 2 BASIC8.55□□□□□ -1.047e-7■■■□□ 18.4
SUB1P53999 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.036e-7■■■□□ 18.4
SUB1P53999 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC15.4■□□□□ 0.067e-16■■■□□ 18.3
SUB1P53999 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC14.38□□□□□ -0.117e-16■■■□□ 18.3
SUB1P53999 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC12.26□□□□□ -0.457e-16■■■□□ 18.3
SUB1P53999 RTN4-206ENST00000394611 4161 ntTSL 1 (best) BASIC7.23□□□□□ -1.257e-16■■■□□ 18.3
SUB1P53999 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC5.7□□□□□ -1.57e-16■■■□□ 18.3
SUB1P53999 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.537e-16■■■□□ 18.3
SUB1P53999 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.09□□□□□ -1.927e-16■■■□□ 18.3
SUB1P53999 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC2.94□□□□□ -1.947e-16■■■□□ 18.3
SUB1P53999 SLC2A1-208ENST00000630287 2398 ntTSL 512.34□□□□□ -0.431e-12■■■□□ 18.3
SUB1P53999 GTF2F2-201ENST00000340473 2239 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.736e-7■■■□□ 18.3
SUB1P53999 SLC2A1-203ENST00000426263 3667 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.821e-12■■■□□ 18.3
SUB1P53999 C12orf57-203ENST00000538392 979 ntTSL 214.09□□□□□ -0.156e-7■■■□□ 18.3
SUB1P53999 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC10.49□□□□□ -0.736e-7■■■□□ 18.3
SUB1P53999 C12orf57-202ENST00000537087 662 ntTSL 2 BASIC8.46□□□□□ -1.066e-7■■■□□ 18.3
SUB1P53999 C12orf57-207ENST00000545581 556 ntTSL 36.94□□□□□ -1.36e-7■■■□□ 18.3
SUB1P53999 C12orf57-205ENST00000542222 640 ntTSL 26.85□□□□□ -1.316e-7■■■□□ 18.3
SUB1P53999 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.261e-6■■■□□ 18.3
SUB1P53999 TUBB6-202ENST00000417736 2163 ntTSL 219.6■□□□□ 0.731e-6■■■□□ 18.3
SUB1P53999 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC11.67□□□□□ -0.541e-6■■■□□ 18.3
SUB1P53999 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC11.33□□□□□ -0.61e-6■■■□□ 18.3
SUB1P53999 TUBB6-204ENST00000586691 359 ntTSL 25.05□□□□□ -1.61e-6■■■□□ 18.3
SUB1P53999 PHB-212ENST00000512041 694 ntTSL 37.08□□□□□ -1.289e-7■■■□□ 18.3
SUB1P53999 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.245e-14■■■□□ 18.3
SUB1P53999 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.065e-14■■■□□ 18.3
SUB1P53999 DHRS2-208ENST00000556729 5318 ntTSL 214.56□□□□□ -0.085e-14■■■□□ 18.3
SUB1P53999 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.215e-14■■■□□ 18.3
SUB1P53999 DHRS2-209ENST00000557535 927 ntTSL 512.52□□□□□ -0.415e-14■■■□□ 18.3
SUB1P53999 DHRS2-207ENST00000556701 3157 ntTSL 1 (best)12.03□□□□□ -0.485e-14■■■□□ 18.3
SUB1P53999 DHRS2-206ENST00000556550 2595 nt11.44□□□□□ -0.585e-14■■■□□ 18.3
SUB1P53999 KRT19-204ENST00000468880 868 ntTSL 211.13□□□□□ -0.632e-6■■■□□ 18.3
SUB1P53999 MTHFD1-202ENST00000545908 6814 ntTSL 2 BASIC8.11□□□□□ -1.113e-9■■■□□ 18.3
SUB1P53999 MTHFD1-213ENST00000556284 932 ntTSL 57.89□□□□□ -1.153e-9■■■□□ 18.3
SUB1P53999 MTHFD1-201ENST00000216605 3136 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.263e-9■■■□□ 18.3
SUB1P53999 MTHFD1-206ENST00000554353 556 ntTSL 24□□□□□ -1.773e-9■■■□□ 18.3
SUB1P53999 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.554e-6■■■□□ 18.3
SUB1P53999 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC11.04□□□□□ -0.644e-6■■■□□ 18.3
SUB1P53999 MRPL51-205ENST00000543164 814 ntTSL 2 BASIC10.26□□□□□ -0.774e-6■■■□□ 18.3
SUB1P53999 MRPL51-206ENST00000543703 441 ntTSL 3 BASIC10.26□□□□□ -0.774e-6■■■□□ 18.3
SUB1P53999 NBAS-201ENST00000281513 7281 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.082e-6■■■□□ 18.3
SUB1P53999 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC2.97□□□□□ -1.934e-6■■■□□ 18.3
SUB1P53999 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC1.5□□□□□ -2.174e-6■■■□□ 18.3
SUB1P53999 ATP5O-210ENST00000496044 673 ntTSL 212.97□□□□□ -0.332e-9■■■□□ 18.2
SUB1P53999 ATP5O-207ENST00000487374 469 ntTSL 511.99□□□□□ -0.492e-9■■■□□ 18.2
SUB1P53999 ATP5O-206ENST00000484627 157 ntTSL 1 (best)5.47□□□□□ -1.532e-9■■■□□ 18.2
SUB1P53999 AK2-202ENST00000373449 3586 ntAPPRIS ALT1 TSL 1 (best) BASIC8.69□□□□□ -1.022e-8■■■□□ 18.2
SUB1P53999 AK2-215ENST00000629371 3576 ntTSL 3 BASIC8.03□□□□□ -1.122e-8■■■□□ 18.2
SUB1P53999 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC24.64■■□□□ 1.542e-6■■■□□ 18.2
Retrieved 100 of 11,644 protein–RNA pairs in 128.4 ms