RNA–Protein interactions for RNA: ENST00000375224.1

UBR4-202, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 3,475 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-202ENST00000375224 NISCHQ9Y2I1 1504 aa17.73■□□□□ 0.43
UBR4-202ENST00000375224 CCDC180Q9P1Z9 1646 aa15.34■□□□□ 0.05
UBR4-202ENST00000375224 ZCCHC6Q5VYS8 1495 aaKnown RBP14.95□□□□□ -0.02
UBR4-202ENST00000375224 DCAF1Q9Y4B6 1507 aa14.68□□□□□ -0.06
UBR4-202ENST00000375224 SHROOM4Q9ULL8 1493 aa14.65□□□□□ -0.06
UBR4-202ENST00000375224 DCAF8L2P0C7V8 631 aa14.58□□□□□ -0.08
UBR4-202ENST00000375224 MYO15BQ96JP2 1530 aa14.41□□□□□ -0.1
UBR4-202ENST00000375224 SUPT5HO00267 1087 aaKnown RBP14.28□□□□□ -0.12
UBR4-202ENST00000375224 NACADO15069 1562 aa14.23□□□□□ -0.13
UBR4-202ENST00000375224 ABCC9O60706 1549 aa14.22□□□□□ -0.13
UBR4-202ENST00000375224 SCRIBQ14160 1630 aa14.12□□□□□ -0.15
UBR4-202ENST00000375224 RB1CC1Q8TDY2 1594 aa14.04□□□□□ -0.16
UBR4-202ENST00000375224 RSF1Q96T23 1441 aaPredicted RBP13.86□□□□□ -0.19
UBR4-202ENST00000375224 CHIC1Q5VXU3 224 aa13.82□□□□□ -0.2
UBR4-202ENST00000375224 CECR2Q9BXF3 1484 aa13.72□□□□□ -0.21
UBR4-202ENST00000375224 UNC13AQ9UPW8 1703 aa13.72□□□□□ -0.21
UBR4-202ENST00000375224 MROH2BQ7Z745 1585 aa13.69□□□□□ -0.22
UBR4-202ENST00000375224 BAZ1AQ9NRL2 1556 aaPredicted RBP13.69□□□□□ -0.22
UBR4-202ENST00000375224 PELP1Q8IZL8 1130 aaKnown RBP13.6□□□□□ -0.23
UBR4-202ENST00000375224 WIZO95785 1651 aa13.6□□□□□ -0.23
UBR4-202ENST00000375224 SMARCA4P51532 1647 aa13.57□□□□□ -0.24
UBR4-202ENST00000375224 BICRAQ9NZM4 1560 aa13.56□□□□□ -0.24
UBR4-202ENST00000375224 TOP2AP11388 1531 aaKnown RBP13.49□□□□□ -0.25
UBR4-202ENST00000375224 PABPN1Q86U42 306 aaKnown RBP eCLIP13.47□□□□□ -0.254e-8■■■□□ 16.1
UBR4-202ENST00000375224 TRIM41Q8WV44 630 aa13.43□□□□□ -0.26
UBR4-202ENST00000375224 MYT1Q01538 1121 aa13.4□□□□□ -0.26
UBR4-202ENST00000375224 PEG3Q9GZU2 1588 aa13.4□□□□□ -0.27
UBR4-202ENST00000375224 SMARCA2P51531 1590 aa13.35□□□□□ -0.27
UBR4-202ENST00000375224 CCDC88BA6NC98 1476 aa13.35□□□□□ -0.27
UBR4-202ENST00000375224 EIF4G1Q04637 1599 aaKnown RBP13.34□□□□□ -0.27
UBR4-202ENST00000375224 LOC105371045A0A1W2PR82 267 aa13.28□□□□□ -0.28
UBR4-202ENST00000375224 ATAD2BQ9ULI0 1458 aa13.27□□□□□ -0.28
UBR4-202ENST00000375224 BAZ1BQ9UIG0 1483 aaKnown RBP13.23□□□□□ -0.29
UBR4-202ENST00000375224 FAM9AQ8IZU1 332 aaPredicted RBP13.15□□□□□ -0.3
UBR4-202ENST00000375224 ABCC8Q09428 1581 aa13.14□□□□□ -0.31
UBR4-202ENST00000375224 HMGXB3Q12766 1538 aa13.13□□□□□ -0.31
UBR4-202ENST00000375224 NCAPD3P42695 1498 aa13.12□□□□□ -0.31
UBR4-202ENST00000375224 EEA1Q15075 1411 aa13.07□□□□□ -0.32
UBR4-202ENST00000375224 WRNQ14191 1432 aaPredicted RBP eCLIP13.06□□□□□ -0.32
UBR4-202ENST00000375224 PCGF6Q9BYE7 350 aa13.01□□□□□ -0.33
UBR4-202ENST00000375224 TRIM26Q12899 539 aaPredicted RBP12.98□□□□□ -0.33
UBR4-202ENST00000375224 SOGA1O94964 1423 aa12.96□□□□□ -0.33
UBR4-202ENST00000375224 SYNJ1O43426 1573 aa12.96□□□□□ -0.34
UBR4-202ENST00000375224 CSRNP3Q8WYN3 585 aa12.95□□□□□ -0.34
UBR4-202ENST00000375224 EHMT2Q96KQ7 1210 aa12.94□□□□□ -0.34
UBR4-202ENST00000375224 TOP2BQ02880 1626 aa12.91□□□□□ -0.34
UBR4-202ENST00000375224 CFTRP13569 1480 aa12.91□□□□□ -0.34
UBR4-202ENST00000375224 TNIKQ9UKE5 1360 aa12.9□□□□□ -0.34
UBR4-202ENST00000375224 BIVM-ERCC5R4GMW8 1640 aa12.89□□□□□ -0.35
UBR4-202ENST00000375224 HRCP23327 699 aa12.89□□□□□ -0.35
UBR4-202ENST00000375224 CC2D2AQ9P2K1 1620 aa12.88□□□□□ -0.35
UBR4-202ENST00000375224 RUSC2Q8N2Y8 1516 aa12.88□□□□□ -0.35
UBR4-202ENST00000375224 GOLGA3Q08378 1498 aa12.88□□□□□ -0.35
UBR4-202ENST00000375224 PRDM2Q13029 1718 aa12.87□□□□□ -0.35
UBR4-202ENST00000375224 CEP164Q9UPV0 1460 aa12.85□□□□□ -0.35
UBR4-202ENST00000375224 KIF21BO75037 1637 aa12.85□□□□□ -0.35
UBR4-202ENST00000375224 CEP162Q5TB80 1403 aa12.82□□□□□ -0.36
UBR4-202ENST00000375224 UBTFP17480 764 aaKnown RBP12.82□□□□□ -0.36
UBR4-202ENST00000375224 CADPSQ9ULU8 1353 aa12.81□□□□□ -0.36
UBR4-202ENST00000375224 CUX1P39880 1505 aa12.79□□□□□ -0.36
UBR4-202ENST00000375224 TTBK1Q5TCY1 1321 aaPredicted RBP12.76□□□□□ -0.37
UBR4-202ENST00000375224 KIF27Q86VH2 1401 aa12.72□□□□□ -0.37
UBR4-202ENST00000375224 ERICH3Q5RHP9 1530 aa12.72□□□□□ -0.37
UBR4-202ENST00000375224 RAPGEF2Q9Y4G8 1499 aa12.69□□□□□ -0.38
UBR4-202ENST00000375224 PRXQ9BXM0 1461 aa12.68□□□□□ -0.38
UBR4-202ENST00000375224 CLIP1P30622 1438 aa12.67□□□□□ -0.38
UBR4-202ENST00000375224 ZEB1P37275 1124 aaPredicted RBP12.67□□□□□ -0.38
UBR4-202ENST00000375224 FANCD2Q9BXW9 1451 aa12.66□□□□□ -0.38
UBR4-202ENST00000375224 LAMC3Q9Y6N6 1575 aa12.64□□□□□ -0.39
UBR4-202ENST00000375224 PPARGC1BQ86YN6 1023 aaKnown RBP12.62□□□□□ -0.39
UBR4-202ENST00000375224 FGD5Q6ZNL6 1462 aa12.61□□□□□ -0.39
UBR4-202ENST00000375224 DNMBPQ6XZF7 1577 aa12.61□□□□□ -0.39
UBR4-202ENST00000375224 VPS8Q8N3P4 1428 aa12.6□□□□□ -0.39
UBR4-202ENST00000375224 CUX2O14529 1486 aa12.6□□□□□ -0.39
UBR4-202ENST00000375224 APLP2Q06481 763 aa12.56□□□□□ -0.4
UBR4-202ENST00000375224 NESP48681 1621 aa12.56□□□□□ -0.4
UBR4-202ENST00000375224 TOPBP1Q92547 1522 aa12.55□□□□□ -0.4
UBR4-202ENST00000375224 IGF1RP08069 1367 aa12.55□□□□□ -0.4
UBR4-202ENST00000375224 PDS5BQ9NTI5 1447 aa12.55□□□□□ -0.4
UBR4-202ENST00000375224 ABCA10Q8WWZ4 1543 aa12.52□□□□□ -0.4
UBR4-202ENST00000375224 CARMIL1Q5VZK9 1371 aa12.51□□□□□ -0.41
UBR4-202ENST00000375224 POLA1P09884 1462 aaPredicted RBP12.51□□□□□ -0.41
UBR4-202ENST00000375224 RANGAP1P46060 587 aaPredicted RBP12.48□□□□□ -0.41
UBR4-202ENST00000375224 ARAP1Q96P48 1450 aa12.48□□□□□ -0.41
UBR4-202ENST00000375224 URB2Q14146 1524 aaKnown RBP12.46□□□□□ -0.41
UBR4-202ENST00000375224 RAD54L2Q9Y4B4 1467 aa12.46□□□□□ -0.41
UBR4-202ENST00000375224 CUL7Q14999 1698 aa12.45□□□□□ -0.42
UBR4-202ENST00000375224 ARHGAP35Q9NRY4 1499 aa12.43□□□□□ -0.42
UBR4-202ENST00000375224 WDR97A6NE52 1622 aa12.43□□□□□ -0.42
UBR4-202ENST00000375224 KIF21AQ7Z4S6 1674 aa12.43□□□□□ -0.42
UBR4-202ENST00000375224 CCER1Q8TC90 406 aaPredicted RBP12.41□□□□□ -0.42
UBR4-202ENST00000375224 DNAJC5BQ9UF47 199 aa12.39□□□□□ -0.43
UBR4-202ENST00000375224 ABCA5Q8WWZ7 1642 aa12.38□□□□□ -0.43
UBR4-202ENST00000375224 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.38□□□□□ -0.43
UBR4-202ENST00000375224 GAPVD1Q14C86 1478 aa12.36□□□□□ -0.43
UBR4-202ENST00000375224 MAP3K1Q13233 1512 aa12.35□□□□□ -0.43
UBR4-202ENST00000375224 FHAD1B1AJZ9 1412 aa12.35□□□□□ -0.43
UBR4-202ENST00000375224 EFCAB5A4FU69 1503 aa12.35□□□□□ -0.43
UBR4-202ENST00000375224 MRC2Q9UBG0 1479 aa12.35□□□□□ -0.43
UBR4-202ENST00000375224 CTTNBP2Q8WZ74 1663 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms