RNA–Protein interactions for RNA: ENST00000545908.5

MTHFD1-202, Transcript of methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, humanhuman

TSL 2 BASIC

Gene MTHFD1, Length 6,814 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MTHFD1-202ENST00000545908 DCAF8L2P0C7V8 631 aa16.37■□□□□ 0.21
MTHFD1-202ENST00000545908 NISCHQ9Y2I1 1504 aa16.1■□□□□ 0.17
MTHFD1-202ENST00000545908 SHROOM4Q9ULL8 1493 aa15.18■□□□□ 0.02
MTHFD1-202ENST00000545908 SUPT5HO00267 1087 aaKnown RBP15.14■□□□□ 0.01
MTHFD1-202ENST00000545908 EHMT2Q96KQ7 1210 aa14.69□□□□□ -0.06
MTHFD1-202ENST00000545908 FAM9AQ8IZU1 332 aaPredicted RBP14.48□□□□□ -0.09
MTHFD1-202ENST00000545908 APLP2Q06481 763 aa14.38□□□□□ -0.11
MTHFD1-202ENST00000545908 RANGAP1P46060 587 aaPredicted RBP14.19□□□□□ -0.14
MTHFD1-202ENST00000545908 ABCC9O60706 1549 aa14.16□□□□□ -0.14
MTHFD1-202ENST00000545908 ATP1B4Q9UN42 357 aaPredicted RBP14.13□□□□□ -0.15
MTHFD1-202ENST00000545908 TTBK1Q5TCY1 1321 aaPredicted RBP14.11□□□□□ -0.15
MTHFD1-202ENST00000545908 TRIM41Q8WV44 630 aa14.1□□□□□ -0.15
MTHFD1-202ENST00000545908 UBTFP17480 764 aaKnown RBP13.96□□□□□ -0.17
MTHFD1-202ENST00000545908 PABPN1Q86U42 306 aaKnown RBP eCLIP13.9□□□□□ -0.18
MTHFD1-202ENST00000545908 MYT1Q01538 1121 aa13.81□□□□□ -0.2
MTHFD1-202ENST00000545908 MYT1LQ9UL68 1186 aa13.73□□□□□ -0.21
MTHFD1-202ENST00000545908 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.71□□□□□ -0.21
MTHFD1-202ENST00000545908 HNRNPUL2Q1KMD3 747 aaKnown RBP13.71□□□□□ -0.21
MTHFD1-202ENST00000545908 PCGF6Q9BYE7 350 aa13.69□□□□□ -0.22
MTHFD1-202ENST00000545908 CCDC180Q9P1Z9 1646 aa13.63□□□□□ -0.23
MTHFD1-202ENST00000545908 PELP1Q8IZL8 1130 aaKnown RBP13.59□□□□□ -0.23
MTHFD1-202ENST00000545908 CCER1Q8TC90 406 aaPredicted RBP13.59□□□□□ -0.23
MTHFD1-202ENST00000545908 SCRIBQ14160 1630 aa13.58□□□□□ -0.24
MTHFD1-202ENST00000545908 PPARGC1BQ86YN6 1023 aaKnown RBP13.53□□□□□ -0.24
MTHFD1-202ENST00000545908 ITGAEP38570 1179 aa13.45□□□□□ -0.26
MTHFD1-202ENST00000545908 ZEB1P37275 1124 aaPredicted RBP13.43□□□□□ -0.26
MTHFD1-202ENST00000545908 CHIC1Q5VXU3 224 aa13.43□□□□□ -0.26
MTHFD1-202ENST00000545908 FBLN2P98095 1184 aa13.42□□□□□ -0.26
MTHFD1-202ENST00000545908 ERICH6Q7L0X2 663 aa13.42□□□□□ -0.26
MTHFD1-202ENST00000545908 RB1CC1Q8TDY2 1594 aa13.37□□□□□ -0.27
MTHFD1-202ENST00000545908 ZCCHC6Q5VYS8 1495 aaKnown RBP13.3□□□□□ -0.28
MTHFD1-202ENST00000545908 LOC105371045A0A1W2PR82 267 aa13.29□□□□□ -0.28
MTHFD1-202ENST00000545908 POLR3GLQ9BT43 218 aa13.26□□□□□ -0.29
MTHFD1-202ENST00000545908 TRIM26Q12899 539 aaPredicted RBP13.22□□□□□ -0.29
MTHFD1-202ENST00000545908 FAM50AQ14320 339 aaKnown RBP13.22□□□□□ -0.29
MTHFD1-202ENST00000545908 SLC4A1APQ9BWU0 796 aaKnown RBP13.17□□□□□ -0.3
MTHFD1-202ENST00000545908 CENPBP07199 599 aaPredicted RBP13.16□□□□□ -0.3
MTHFD1-202ENST00000545908 NACADO15069 1562 aa13.15□□□□□ -0.3
MTHFD1-202ENST00000545908 TRIM52Q96A61 297 aa13.12□□□□□ -0.31
MTHFD1-202ENST00000545908 ARID3CA6NKF2 412 aa13.08□□□□□ -0.32
MTHFD1-202ENST00000545908 P3H3Q8IVL6 736 aa13.08□□□□□ -0.32
MTHFD1-202ENST00000545908 YTHDC1Q96MU7 727 aaKnown RBP13.08□□□□□ -0.32
MTHFD1-202ENST00000545908 NEFLP07196 543 aa13.06□□□□□ -0.32
MTHFD1-202ENST00000545908 CNGB1Q14028 1251 aaPredicted RBP13.05□□□□□ -0.32
MTHFD1-202ENST00000545908 BCANQ96GW7 911 aa12.99□□□□□ -0.33
MTHFD1-202ENST00000545908 NPM1P06748 294 aaKnown RBP eCLIP12.98□□□□□ -0.33
MTHFD1-202ENST00000545908 ZNF777Q9ULD5 760 aaPredicted RBP12.95□□□□□ -0.34
MTHFD1-202ENST00000545908 NEUROD1Q13562 356 aa12.93□□□□□ -0.34
MTHFD1-202ENST00000545908 ERCC6Q03468 1493 aa12.92□□□□□ -0.34
MTHFD1-202ENST00000545908 CSRNP3Q8WYN3 585 aa12.92□□□□□ -0.34
MTHFD1-202ENST00000545908 CDK11AQ9UQ88 783 aaPredicted RBP12.92□□□□□ -0.34
MTHFD1-202ENST00000545908 ESF1Q9H501 851 aaKnown RBP12.92□□□□□ -0.34
MTHFD1-202ENST00000545908 BAZ1BQ9UIG0 1483 aaKnown RBP12.92□□□□□ -0.34
MTHFD1-202ENST00000545908 PLPPR3Q6T4P5 718 aa12.89□□□□□ -0.35
MTHFD1-202ENST00000545908 CHMP7Q8WUX9 453 aaPredicted RBP12.89□□□□□ -0.35
MTHFD1-202ENST00000545908 ZNF326Q5BKZ1 582 aaKnown RBP12.89□□□□□ -0.35
MTHFD1-202ENST00000545908 STAG3Q9UJ98 1225 aa12.79□□□□□ -0.36
MTHFD1-202ENST00000545908 HRCP23327 699 aa12.76□□□□□ -0.37
MTHFD1-202ENST00000545908 BAZ1AQ9NRL2 1556 aaPredicted RBP12.74□□□□□ -0.37
MTHFD1-202ENST00000545908 CHGAP10645 457 aaKnown RBP12.73□□□□□ -0.37
MTHFD1-202ENST00000545908 SLC24A1O60721 1099 aa12.71□□□□□ -0.38
MTHFD1-202ENST00000545908 DCAF1Q9Y4B6 1507 aa12.7□□□□□ -0.38
MTHFD1-202ENST00000545908 RSF1Q96T23 1441 aaPredicted RBP12.69□□□□□ -0.38
MTHFD1-202ENST00000545908 DAXXQ9UER7 740 aaPredicted RBP12.68□□□□□ -0.38
MTHFD1-202ENST00000545908 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.66□□□□□ -0.383e-6■■■□□ 14.6
MTHFD1-202ENST00000545908 KCNH8Q96L42 1107 aa12.63□□□□□ -0.39
MTHFD1-202ENST00000545908 MTUS2Q5JR59 1369 aa12.61□□□□□ -0.39
MTHFD1-202ENST00000545908 NEFMP07197 916 aa12.61□□□□□ -0.39
MTHFD1-202ENST00000545908 SMARCA2P51531 1590 aa12.61□□□□□ -0.39
MTHFD1-202ENST00000545908 WRNQ14191 1432 aaPredicted RBP eCLIP12.6□□□□□ -0.39
MTHFD1-202ENST00000545908 CHIC2Q9UKJ5 165 aa12.59□□□□□ -0.39
MTHFD1-202ENST00000545908 ANP32CO43423 234 aa12.59□□□□□ -0.39
MTHFD1-202ENST00000545908 DIEXFQ68CQ4 756 aaKnown RBP12.58□□□□□ -0.4
MTHFD1-202ENST00000545908 EIF4G1Q04637 1599 aaKnown RBP12.58□□□□□ -0.4
MTHFD1-202ENST00000545908 KIF27Q86VH2 1401 aa12.57□□□□□ -0.4
MTHFD1-202ENST00000545908 TSPY4P0CV99 314 aa12.56□□□□□ -0.4
MTHFD1-202ENST00000545908 TSPY10P0CW01 314 aa12.56□□□□□ -0.4
MTHFD1-202ENST00000545908 CLSPNQ9HAW4 1339 aa12.56□□□□□ -0.4
MTHFD1-202ENST00000545908 GOLGA3Q08378 1498 aa12.55□□□□□ -0.4
MTHFD1-202ENST00000545908 CECR2Q9BXF3 1484 aa12.55□□□□□ -0.4
MTHFD1-202ENST00000545908 ARID4BQ4LE39 1312 aaPredicted RBP12.55□□□□□ -0.4
MTHFD1-202ENST00000545908 PLEKHD1A6NEE1 506 aa12.53□□□□□ -0.4
MTHFD1-202ENST00000545908 CLIP1P30622 1438 aa12.52□□□□□ -0.4
MTHFD1-202ENST00000545908 ZBTB47Q9UFB7 747 aaPredicted RBP12.51□□□□□ -0.41
MTHFD1-202ENST00000545908 TONSLQ96HA7 1378 aa12.51□□□□□ -0.41
MTHFD1-202ENST00000545908 EEA1Q15075 1411 aa12.5□□□□□ -0.41
MTHFD1-202ENST00000545908 PDS5BQ9NTI5 1447 aa12.49□□□□□ -0.41
MTHFD1-202ENST00000545908 TRHP20396 242 aaPredicted RBP12.49□□□□□ -0.41
MTHFD1-202ENST00000545908 CANXP27824 592 aaKnown RBP12.49□□□□□ -0.41
MTHFD1-202ENST00000545908 SCAF1Q9H7N4 1312 aaKnown RBP12.48□□□□□ -0.41
MTHFD1-202ENST00000545908 WIZO95785 1651 aa12.46□□□□□ -0.41
MTHFD1-202ENST00000545908 MROH2BQ7Z745 1585 aa12.46□□□□□ -0.42
MTHFD1-202ENST00000545908 SENP3Q9H4L4 574 aaPredicted RBP12.45□□□□□ -0.42
MTHFD1-202ENST00000545908 PPP1R15AO75807 674 aaPredicted RBP12.44□□□□□ -0.42
MTHFD1-202ENST00000545908 CUX2O14529 1486 aa12.44□□□□□ -0.42
MTHFD1-202ENST00000545908 CEP164Q9UPV0 1460 aa12.44□□□□□ -0.42
MTHFD1-202ENST00000545908 KDM2AQ9Y2K7 1162 aa12.42□□□□□ -0.42
MTHFD1-202ENST00000545908 CCDC88BA6NC98 1476 aa12.42□□□□□ -0.42
MTHFD1-202ENST00000545908 BCL11AQ9H165 835 aa12.42□□□□□ -0.42
MTHFD1-202ENST00000545908 ZNF316A6NFI3 1004 aaPredicted RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms