RNA–Protein interactions for RNA: ENST00000554353.1

MTHFD1-206, Transcript of methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, humanhuman

TSL 2

Gene MTHFD1, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MTHFD1-206ENST00000554353 AEBP2Q6ZN18 517 aaPredicted RBP22.63■■□□□ 1.21
MTHFD1-206ENST00000554353 CHIC1Q5VXU3 224 aa21.65■■□□□ 1.06
MTHFD1-206ENST00000554353 SENP3Q9H4L4 574 aaPredicted RBP19.49■□□□□ 0.71
MTHFD1-206ENST00000554353 PHF23Q9BUL5 403 aaPredicted RBP19.09■□□□□ 0.65
MTHFD1-206ENST00000554353 POTEDQ86YR6 584 aa18.95■□□□□ 0.62
MTHFD1-206ENST00000554353 FOXD1Q16676 465 aa18.28■□□□□ 0.52
MTHFD1-206ENST00000554353 MSH5O43196 834 aa17.55■□□□□ 0.4
MTHFD1-206ENST00000554353 PLPPR3Q6T4P5 718 aa17.47■□□□□ 0.39
MTHFD1-206ENST00000554353 PPP6R1Q9UPN7 881 aa16.92■□□□□ 0.3
MTHFD1-206ENST00000554353 ADRA2BP18089 450 aa16.85■□□□□ 0.29
MTHFD1-206ENST00000554353 PIAS4Q8N2W9 510 aaPredicted RBP16.8■□□□□ 0.28
MTHFD1-206ENST00000554353 CACNB1Q02641 598 aaPredicted RBP15.68■□□□□ 0.1
MTHFD1-206ENST00000554353 KCNA4P22459 653 aa15.49■□□□□ 0.07
MTHFD1-206ENST00000554353 PPP4R3CPQ6ZMV5 832 aa15.46■□□□□ 0.07
MTHFD1-206ENST00000554353 MAPK8IP2Q13387 824 aaPredicted RBP15.37■□□□□ 0.05
MTHFD1-206ENST00000554353 DMRT2Q9Y5R5 561 aa15.29■□□□□ 0.04
MTHFD1-206ENST00000554353 SCAF1Q9H7N4 1312 aaKnown RBP15.26■□□□□ 0.03
MTHFD1-206ENST00000554353 NCBP3Q53F19 620 aaKnown RBP15.15■□□□□ 0.02
MTHFD1-206ENST00000554353 CNKSR2Q8WXI2 1034 aa14.96□□□□□ -0.01
MTHFD1-206ENST00000554353 NPM3O75607 178 aaKnown RBP14.92□□□□□ -0.02
MTHFD1-206ENST00000554353 RNF39Q9H2S5 420 aa14.87□□□□□ -0.03
MTHFD1-206ENST00000554353 EHMT2Q96KQ7 1210 aa14.85□□□□□ -0.03
MTHFD1-206ENST00000554353 SLC4A1APQ9BWU0 796 aaKnown RBP14.83□□□□□ -0.04
MTHFD1-206ENST00000554353 HOXD11P31277 338 aaPredicted RBP14.75□□□□□ -0.05
MTHFD1-206ENST00000554353 RNF216Q9NWF9 866 aaPredicted RBP14.72□□□□□ -0.05
MTHFD1-206ENST00000554353 DCAF8L1A6NGE4 600 aa14.65□□□□□ -0.06
MTHFD1-206ENST00000554353 POTEHQ6S545 545 aa14.63□□□□□ -0.07
MTHFD1-206ENST00000554353 C1QBPQ07021 282 aaKnown RBP14.6□□□□□ -0.07
MTHFD1-206ENST00000554353 CSRNP3Q8WYN3 585 aa14.44□□□□□ -0.1
MTHFD1-206ENST00000554353 DNAJC5BQ9UF47 199 aa14.32□□□□□ -0.12
MTHFD1-206ENST00000554353 ZBTB22O15209 634 aa14.24□□□□□ -0.13
MTHFD1-206ENST00000554353 FOXD4L1Q9NU39 408 aa14.14□□□□□ -0.15
MTHFD1-206ENST00000554353 SLC4A2P04920 1241 aa14□□□□□ -0.17
MTHFD1-206ENST00000554353 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.99□□□□□ -0.17
MTHFD1-206ENST00000554353 U3KPZ7 1027 aaPredicted RBP13.82□□□□□ -0.2
MTHFD1-206ENST00000554353 MYCNP04198 464 aaPredicted RBP13.78□□□□□ -0.2
MTHFD1-206ENST00000554353 ATXN8OSP0DMR3 200 aa13.58□□□□□ -0.24
MTHFD1-206ENST00000554353 DSG3P32926 999 aa13.55□□□□□ -0.24
MTHFD1-206ENST00000554353 SPINK5Q9NQ38 1064 aaPredicted RBP13.51□□□□□ -0.25
MTHFD1-206ENST00000554353 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.49□□□□□ -0.25
MTHFD1-206ENST00000554353 HNRNPUL2Q1KMD3 747 aaKnown RBP13.49□□□□□ -0.25
MTHFD1-206ENST00000554353 SAMD1Q6SPF0 538 aaPredicted RBP13.46□□□□□ -0.25
MTHFD1-206ENST00000554353 ATF5Q9Y2D1 282 aaPredicted RBP13.4□□□□□ -0.26
MTHFD1-206ENST00000554353 CAPN15O75808 1086 aa13.37□□□□□ -0.27
MTHFD1-206ENST00000554353 APLP2Q06481 763 aa13.31□□□□□ -0.28
MTHFD1-206ENST00000554353 TRHP20396 242 aaPredicted RBP13.28□□□□□ -0.28
MTHFD1-206ENST00000554353 ZNF219Q9P2Y4 722 aaPredicted RBP13.23□□□□□ -0.29
MTHFD1-206ENST00000554353 SP7Q8TDD2 431 aaPredicted RBP13.21□□□□□ -0.29
MTHFD1-206ENST00000554353 ABCB7O75027 752 aa13.16□□□□□ -0.3
MTHFD1-206ENST00000554353 CHRDL2Q6WN34 429 aa13.1□□□□□ -0.31
MTHFD1-206ENST00000554353 FKBP8Q14318 412 aa13.08□□□□□ -0.32
MTHFD1-206ENST00000554353 POLA2Q14181 598 aa13.04□□□□□ -0.32
MTHFD1-206ENST00000554353 RBM42Q9BTD8 480 aaKnown RBP12.96□□□□□ -0.33
MTHFD1-206ENST00000554353 FBLN2P98095 1184 aa12.83□□□□□ -0.36
MTHFD1-206ENST00000554353 MKRN4PQ13434 485 aaPredicted RBP12.82□□□□□ -0.36
MTHFD1-206ENST00000554353 ZBTB12Q9Y330 459 aaPredicted RBP12.73□□□□□ -0.37
MTHFD1-206ENST00000554353 SPDYE4A6NLX3 237 aa12.72□□□□□ -0.37
MTHFD1-206ENST00000554353 OSCARQ8IYS5 282 aa12.63□□□□□ -0.39
MTHFD1-206ENST00000554353 HAX1O00165 279 aa12.6□□□□□ -0.39
MTHFD1-206ENST00000554353 PIP4P2Q8N4L2 257 aa12.56□□□□□ -0.4
MTHFD1-206ENST00000554353 FBXO3Q9UK99 471 aa12.49□□□□□ -0.41
MTHFD1-206ENST00000554353 AMER1Q5JTC6 1135 aaPredicted RBP12.48□□□□□ -0.41
MTHFD1-206ENST00000554353 RTN4Q9NQC3 1192 aaKnown RBP12.48□□□□□ -0.41
MTHFD1-206ENST00000554353 PROM2Q8N271 834 aa12.47□□□□□ -0.41
MTHFD1-206ENST00000554353 PLSCR2Q9NRY7 297 aa12.46□□□□□ -0.41
MTHFD1-206ENST00000554353 AKT1S1Q96B36 256 aa12.43□□□□□ -0.42
MTHFD1-206ENST00000554353 ZNF692Q9BU19 519 aaPredicted RBP12.43□□□□□ -0.42
MTHFD1-206ENST00000554353 SPDYE2BA6NHP3 402 aa12.42□□□□□ -0.42
MTHFD1-206ENST00000554353 SPDYE6P0CI01 402 aa12.42□□□□□ -0.42
MTHFD1-206ENST00000554353 SPDYE2Q495Y8 402 aa12.42□□□□□ -0.42
MTHFD1-206ENST00000554353 EVX2Q03828 476 aa12.37□□□□□ -0.43
MTHFD1-206ENST00000554353 LHX8Q68G74 356 aa12.37□□□□□ -0.43
MTHFD1-206ENST00000554353 SSUH2Q9Y2M2 353 aa12.36□□□□□ -0.43
MTHFD1-206ENST00000554353 VASPP50552 380 aaPredicted RBP12.32□□□□□ -0.44
MTHFD1-206ENST00000554353 FXR2P51116 673 aaKnown RBP eCLIP12.32□□□□□ -0.44
MTHFD1-206ENST00000554353 REM2Q8IYK8 340 aaPredicted RBP12.31□□□□□ -0.44
MTHFD1-206ENST00000554353 PABPN1Q86U42 306 aaKnown RBP eCLIP12.28□□□□□ -0.44
MTHFD1-206ENST00000554353 PITPNM1O00562 1244 aa12.19□□□□□ -0.46
MTHFD1-206ENST00000554353 IFNLR1Q8IU57 520 aaPredicted RBP12.17□□□□□ -0.46
MTHFD1-206ENST00000554353 STAG3Q9UJ98 1225 aa12.15□□□□□ -0.46
MTHFD1-206ENST00000554353 KLHL34Q8N239 644 aa12.09□□□□□ -0.47
MTHFD1-206ENST00000554353 PLCD3Q8N3E9 789 aa12.09□□□□□ -0.47
MTHFD1-206ENST00000554353 SPDYE1Q8NFV5 336 aaPredicted RBP12.08□□□□□ -0.48
MTHFD1-206ENST00000554353 MIER1Q8N108 512 aa12.06□□□□□ -0.48
MTHFD1-206ENST00000554353 GABBR2O75899 941 aa12.05□□□□□ -0.48
MTHFD1-206ENST00000554353 CLEC11AQ9Y240 323 aa12.04□□□□□ -0.48
MTHFD1-206ENST00000554353 SPOCK2Q92563 424 aa11.98□□□□□ -0.49
MTHFD1-206ENST00000554353 C19orf67A6NJJ6 358 aa11.97□□□□□ -0.49
MTHFD1-206ENST00000554353 PLEKHG5O94827 1062 aa11.95□□□□□ -0.5
MTHFD1-206ENST00000554353 PRR29P0C7W0 189 aa11.9□□□□□ -0.5
MTHFD1-206ENST00000554353 PKD2Q13563 968 aa11.88□□□□□ -0.51
MTHFD1-206ENST00000554353 ZBTB47Q9UFB7 747 aaPredicted RBP11.87□□□□□ -0.51
MTHFD1-206ENST00000554353 DCAF8L2P0C7V8 631 aa11.86□□□□□ -0.51
MTHFD1-206ENST00000554353 PRKAR2AP13861 404 aaKnown RBP11.85□□□□□ -0.51
MTHFD1-206ENST00000554353 CHADLQ6NUI6 762 aa11.84□□□□□ -0.51
MTHFD1-206ENST00000554353 SLC24A1O60721 1099 aa11.83□□□□□ -0.52
MTHFD1-206ENST00000554353 ECM2O94769 699 aaPredicted RBP11.79□□□□□ -0.52
MTHFD1-206ENST00000554353 POTEIP0CG38 1075 aa11.79□□□□□ -0.52
MTHFD1-206ENST00000554353 CREBZFQ9NS37 354 aa11.79□□□□□ -0.52
MTHFD1-206ENST00000554353 CIZ1Q9ULV3 898 aaPredicted RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms