RNA–Protein interactions for RNA: ENST00000556284.1

MTHFD1-213, Transcript of methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, humanhuman

TSL 5

Gene MTHFD1, Length 932 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MTHFD1-213ENST00000556284 AEBP2Q6ZN18 517 aaPredicted RBP25.28■■□□□ 1.64
MTHFD1-213ENST00000556284 CHIC1Q5VXU3 224 aa24.91■■□□□ 1.58
MTHFD1-213ENST00000556284 NISCHQ9Y2I1 1504 aa23.55■■□□□ 1.36
MTHFD1-213ENST00000556284 PHF23Q9BUL5 403 aaPredicted RBP21.89■■□□□ 1.09
MTHFD1-213ENST00000556284 SENP3Q9H4L4 574 aaPredicted RBP21.48■■□□□ 1.03
MTHFD1-213ENST00000556284 CCDC180Q9P1Z9 1646 aa20.71■□□□□ 0.91
MTHFD1-213ENST00000556284 PLPPR3Q6T4P5 718 aa20.34■□□□□ 0.85
MTHFD1-213ENST00000556284 ABCC9O60706 1549 aa19.93■□□□□ 0.78
MTHFD1-213ENST00000556284 FOXD1Q16676 465 aa19.88■□□□□ 0.77
MTHFD1-213ENST00000556284 ZCCHC6Q5VYS8 1495 aaKnown RBP19.68■□□□□ 0.74
MTHFD1-213ENST00000556284 DCAF8L2P0C7V8 631 aa19.58■□□□□ 0.72
MTHFD1-213ENST00000556284 DCAF1Q9Y4B6 1507 aa19.52■□□□□ 0.72
MTHFD1-213ENST00000556284 MYO15BQ96JP2 1530 aa19.47■□□□□ 0.71
MTHFD1-213ENST00000556284 NACADO15069 1562 aa19.44■□□□□ 0.7
MTHFD1-213ENST00000556284 RB1CC1Q8TDY2 1594 aa19.35■□□□□ 0.69
MTHFD1-213ENST00000556284 ADRA2BP18089 450 aa19.27■□□□□ 0.68
MTHFD1-213ENST00000556284 PPP6R1Q9UPN7 881 aa19.26■□□□□ 0.67
MTHFD1-213ENST00000556284 SCRIBQ14160 1630 aa18.92■□□□□ 0.62
MTHFD1-213ENST00000556284 SHROOM4Q9ULL8 1493 aa18.84■□□□□ 0.61
MTHFD1-213ENST00000556284 PIAS4Q8N2W9 510 aaPredicted RBP18.82■□□□□ 0.6
MTHFD1-213ENST00000556284 UNC13AQ9UPW8 1703 aa18.8■□□□□ 0.6
MTHFD1-213ENST00000556284 PABPN1Q86U42 306 aaKnown RBP eCLIP18.74■□□□□ 0.59
MTHFD1-213ENST00000556284 BICRAQ9NZM4 1560 aa18.72■□□□□ 0.59
MTHFD1-213ENST00000556284 MSH5O43196 834 aa18.3■□□□□ 0.52
MTHFD1-213ENST00000556284 CECR2Q9BXF3 1484 aa18.29■□□□□ 0.52
MTHFD1-213ENST00000556284 BAZ1AQ9NRL2 1556 aaPredicted RBP18.22■□□□□ 0.51
MTHFD1-213ENST00000556284 EIF4G1Q04637 1599 aaKnown RBP18.21■□□□□ 0.51
MTHFD1-213ENST00000556284 SMARCA4P51532 1647 aa18.16■□□□□ 0.5
MTHFD1-213ENST00000556284 MROH2BQ7Z745 1585 aa18.14■□□□□ 0.49
MTHFD1-213ENST00000556284 RSF1Q96T23 1441 aaPredicted RBP18.11■□□□□ 0.49
MTHFD1-213ENST00000556284 CC2D2AQ9P2K1 1620 aa18.02■□□□□ 0.48
MTHFD1-213ENST00000556284 ATAD2BQ9ULI0 1458 aa18.01■□□□□ 0.47
MTHFD1-213ENST00000556284 SMARCA2P51531 1590 aa18■□□□□ 0.47
MTHFD1-213ENST00000556284 PEG3Q9GZU2 1588 aa18■□□□□ 0.47
MTHFD1-213ENST00000556284 DNAJC5BQ9UF47 199 aa17.98■□□□□ 0.47
MTHFD1-213ENST00000556284 NCAPD3P42695 1498 aa17.96■□□□□ 0.47
MTHFD1-213ENST00000556284 SUPT5HO00267 1087 aaKnown RBP17.96■□□□□ 0.47
MTHFD1-213ENST00000556284 PPP4R3CPQ6ZMV5 832 aa17.93■□□□□ 0.46
MTHFD1-213ENST00000556284 WIZO95785 1651 aa17.93■□□□□ 0.46
MTHFD1-213ENST00000556284 BAZ1BQ9UIG0 1483 aaKnown RBP17.87■□□□□ 0.45
MTHFD1-213ENST00000556284 HMGXB3Q12766 1538 aa17.87■□□□□ 0.45
MTHFD1-213ENST00000556284 TOP2AP11388 1531 aaKnown RBP17.79■□□□□ 0.44
MTHFD1-213ENST00000556284 KCNA4P22459 653 aa17.71■□□□□ 0.43
MTHFD1-213ENST00000556284 SCAF1Q9H7N4 1312 aaKnown RBP17.7■□□□□ 0.42
MTHFD1-213ENST00000556284 CCDC88BA6NC98 1476 aa17.62■□□□□ 0.41
MTHFD1-213ENST00000556284 NCBP3Q53F19 620 aaKnown RBP17.56■□□□□ 0.4
MTHFD1-213ENST00000556284 CADPSQ9ULU8 1353 aa17.47■□□□□ 0.39
MTHFD1-213ENST00000556284 CFTRP13569 1480 aa17.43■□□□□ 0.38
MTHFD1-213ENST00000556284 MAPK8IP2Q13387 824 aaPredicted RBP17.42■□□□□ 0.38
MTHFD1-213ENST00000556284 CNKSR2Q8WXI2 1034 aa17.4■□□□□ 0.38
MTHFD1-213ENST00000556284 LAMC3Q9Y6N6 1575 aa17.37■□□□□ 0.37
MTHFD1-213ENST00000556284 NESP48681 1621 aa17.35■□□□□ 0.37
MTHFD1-213ENST00000556284 PDS5BQ9NTI5 1447 aa17.3■□□□□ 0.36
MTHFD1-213ENST00000556284 NPM3O75607 178 aaKnown RBP17.24■□□□□ 0.35
MTHFD1-213ENST00000556284 FANCD2Q9BXW9 1451 aa17.23■□□□□ 0.35
MTHFD1-213ENST00000556284 PRDM2Q13029 1718 aa17.19■□□□□ 0.34
MTHFD1-213ENST00000556284 ERCC6Q03468 1493 aa17.17■□□□□ 0.34
MTHFD1-213ENST00000556284 DMRT2Q9Y5R5 561 aa17.16■□□□□ 0.34
MTHFD1-213ENST00000556284 CEP164Q9UPV0 1460 aa17.16■□□□□ 0.34
MTHFD1-213ENST00000556284 KIF21AQ7Z4S6 1674 aa17.1■□□□□ 0.33
MTHFD1-213ENST00000556284 MRC2Q9UBG0 1479 aa17.06■□□□□ 0.32
MTHFD1-213ENST00000556284 WRNQ14191 1432 aaPredicted RBP eCLIP17.06■□□□□ 0.32
MTHFD1-213ENST00000556284 ABCC8Q09428 1581 aa17.06■□□□□ 0.32
MTHFD1-213ENST00000556284 URB2Q14146 1524 aaKnown RBP17.01■□□□□ 0.31
MTHFD1-213ENST00000556284 RNF216Q9NWF9 866 aaPredicted RBP17.01■□□□□ 0.31
MTHFD1-213ENST00000556284 DNMBPQ6XZF7 1577 aa16.99■□□□□ 0.31
MTHFD1-213ENST00000556284 CUX1P39880 1505 aa16.99■□□□□ 0.31
MTHFD1-213ENST00000556284 TOPBP1Q92547 1522 aa16.99■□□□□ 0.31
MTHFD1-213ENST00000556284 TRIM41Q8WV44 630 aa16.98■□□□□ 0.31
MTHFD1-213ENST00000556284 WDR62O43379 1518 aa16.97■□□□□ 0.31
MTHFD1-213ENST00000556284 THOC2Q8NI27 1593 aaKnown RBP16.97■□□□□ 0.31
MTHFD1-213ENST00000556284 TOP2BQ02880 1626 aa16.95■□□□□ 0.3
MTHFD1-213ENST00000556284 SYNJ1O43426 1573 aa16.94■□□□□ 0.3
MTHFD1-213ENST00000556284 SLC4A1APQ9BWU0 796 aaKnown RBP16.93■□□□□ 0.3
MTHFD1-213ENST00000556284 BIVM-ERCC5R4GMW8 1640 aa16.91■□□□□ 0.3
MTHFD1-213ENST00000556284 FGD5Q6ZNL6 1462 aa16.88■□□□□ 0.29
MTHFD1-213ENST00000556284 HOXD11P31277 338 aaPredicted RBP16.88■□□□□ 0.29
MTHFD1-213ENST00000556284 POLA1P09884 1462 aaPredicted RBP16.87■□□□□ 0.29
MTHFD1-213ENST00000556284 CUX2O14529 1486 aa16.86■□□□□ 0.29
MTHFD1-213ENST00000556284 SOGA1O94964 1423 aa16.85■□□□□ 0.29
MTHFD1-213ENST00000556284 IFT140Q96RY7 1462 aa16.81■□□□□ 0.28
MTHFD1-213ENST00000556284 RAD54L2Q9Y4B4 1467 aa16.8■□□□□ 0.28
MTHFD1-213ENST00000556284 ABCA10Q8WWZ4 1543 aa16.75■□□□□ 0.27
MTHFD1-213ENST00000556284 TARBP1Q13395 1621 aaKnown RBP16.74■□□□□ 0.27
MTHFD1-213ENST00000556284 TDRD9Q8NDG6 1382 aaKnown RBP16.7■□□□□ 0.26
MTHFD1-213ENST00000556284 KIF27Q86VH2 1401 aa16.7■□□□□ 0.26
MTHFD1-213ENST00000556284 ZNF608Q9ULD9 1512 aaPredicted RBP16.66■□□□□ 0.26
MTHFD1-213ENST00000556284 WDR97A6NE52 1622 aa16.66■□□□□ 0.26
MTHFD1-213ENST00000556284 EEA1Q15075 1411 aa16.65■□□□□ 0.26
MTHFD1-213ENST00000556284 EHMT2Q96KQ7 1210 aa16.65■□□□□ 0.26
MTHFD1-213ENST00000556284 AQRO60306 1485 aaKnown RBP eCLIP16.65■□□□□ 0.268e-7■■■■■ 28.7
MTHFD1-213ENST00000556284 GAPVD1Q14C86 1478 aa16.65■□□□□ 0.26
MTHFD1-213ENST00000556284 RUSC2Q8N2Y8 1516 aa16.61■□□□□ 0.25
MTHFD1-213ENST00000556284 IGF1RP08069 1367 aa16.6■□□□□ 0.25
MTHFD1-213ENST00000556284 ABCA5Q8WWZ7 1642 aa16.59■□□□□ 0.25
MTHFD1-213ENST00000556284 CSRNP3Q8WYN3 585 aa16.59■□□□□ 0.25
MTHFD1-213ENST00000556284 GRIN2BQ13224 1484 aa16.59■□□□□ 0.25
MTHFD1-213ENST00000556284 FAM9AQ8IZU1 332 aaPredicted RBP16.58■□□□□ 0.24
MTHFD1-213ENST00000556284 EIF4G3O43432 1585 aaKnown RBP16.57■□□□□ 0.24
MTHFD1-213ENST00000556284 ERICH3Q5RHP9 1530 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms