Protein–RNA interactions for Protein: Q9UBI1

COMMD3, COMM domain-containing protein 3, humanhuman

Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3Q9UBI1 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COMMD3Q9UBI1 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC17.68■□□□□ 0.42
COMMD3Q9UBI1 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC17.68■□□□□ 0.42
COMMD3Q9UBI1 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COMMD3Q9UBI1 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.68■□□□□ 0.42
COMMD3Q9UBI1 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COMMD3Q9UBI1 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COMMD3Q9UBI1 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC17.68■□□□□ 0.42
COMMD3Q9UBI1 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COMMD3Q9UBI1 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COMMD3Q9UBI1 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 SMUG1P1-201ENST00000590640 811 ntBASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 AL691432.2-201ENST00000607222 2038 ntBASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 Z82202.1-201ENST00000623446 1880 ntBASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COMMD3Q9UBI1 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC17.66■□□□□ 0.42
COMMD3Q9UBI1 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COMMD3Q9UBI1 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COMMD3Q9UBI1 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COMMD3Q9UBI1 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COMMD3Q9UBI1 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
COMMD3Q9UBI1 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COMMD3Q9UBI1 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COMMD3Q9UBI1 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COMMD3Q9UBI1 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC17.66■□□□□ 0.42
COMMD3Q9UBI1 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.66■□□□□ 0.42
COMMD3Q9UBI1 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COMMD3Q9UBI1 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
COMMD3Q9UBI1 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
COMMD3Q9UBI1 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
COMMD3Q9UBI1 AC239859.2-201ENST00000444165 318 ntBASIC17.66■□□□□ 0.42
COMMD3Q9UBI1 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC17.66■□□□□ 0.42
COMMD3Q9UBI1 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC17.66■□□□□ 0.42
COMMD3Q9UBI1 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
COMMD3Q9UBI1 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COMMD3Q9UBI1 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
COMMD3Q9UBI1 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.66■□□□□ 0.42
COMMD3Q9UBI1 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COMMD3Q9UBI1 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
COMMD3Q9UBI1 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COMMD3Q9UBI1 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC17.65■□□□□ 0.42
COMMD3Q9UBI1 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
COMMD3Q9UBI1 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COMMD3Q9UBI1 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
COMMD3Q9UBI1 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COMMD3Q9UBI1 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COMMD3Q9UBI1 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COMMD3Q9UBI1 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COMMD3Q9UBI1 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COMMD3Q9UBI1 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COMMD3Q9UBI1 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COMMD3Q9UBI1 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC17.65■□□□□ 0.42
COMMD3Q9UBI1 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC17.65■□□□□ 0.42
COMMD3Q9UBI1 TREX1-205ENST00000625293 1783 ntBASIC17.65■□□□□ 0.42
COMMD3Q9UBI1 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COMMD3Q9UBI1 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.65■□□□□ 0.42
COMMD3Q9UBI1 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
COMMD3Q9UBI1 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
COMMD3Q9UBI1 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
COMMD3Q9UBI1 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.65■□□□□ 0.42
COMMD3Q9UBI1 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC17.65■□□□□ 0.42
COMMD3Q9UBI1 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COMMD3Q9UBI1 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
COMMD3Q9UBI1 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.64■□□□□ 0.42
COMMD3Q9UBI1 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.64■□□□□ 0.42
COMMD3Q9UBI1 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COMMD3Q9UBI1 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COMMD3Q9UBI1 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COMMD3Q9UBI1 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
COMMD3Q9UBI1 AC092171.4-201ENST00000609130 632 ntBASIC17.64■□□□□ 0.41
COMMD3Q9UBI1 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COMMD3Q9UBI1 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
COMMD3Q9UBI1 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COMMD3Q9UBI1 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.64■□□□□ 0.41
COMMD3Q9UBI1 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COMMD3Q9UBI1 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.64■□□□□ 0.41
COMMD3Q9UBI1 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COMMD3Q9UBI1 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms