RNA–Protein interactions for RNA: ENST00000394272.7

HDDC3-202, Transcript of HD domain containing 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HDDC3, Length 1,880 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-202ENST00000394272 NISCHQ9Y2I1 1504 aa46.62■■■■■ 5.05
HDDC3-202ENST00000394272 CCDC180Q9P1Z9 1646 aa40.78■■■■■ 4.12
HDDC3-202ENST00000394272 ZCCHC6Q5VYS8 1495 aaKnown RBP39.15■■■■□ 3.86
HDDC3-202ENST00000394272 ABCC9O60706 1549 aa38.63■■■■□ 3.77
HDDC3-202ENST00000394272 DCAF1Q9Y4B6 1507 aa38.59■■■■□ 3.77
HDDC3-202ENST00000394272 DCAF8L2P0C7V8 631 aa38.41■■■■□ 3.74
HDDC3-202ENST00000394272 MYO15BQ96JP2 1530 aa38.21■■■■□ 3.71
HDDC3-202ENST00000394272 NACADO15069 1562 aa38■■■■□ 3.67
HDDC3-202ENST00000394272 SHROOM4Q9ULL8 1493 aa37.78■■■■□ 3.64
HDDC3-202ENST00000394272 RB1CC1Q8TDY2 1594 aa37.7■■■■□ 3.63
HDDC3-202ENST00000394272 SCRIBQ14160 1630 aa37.41■■■■□ 3.58
HDDC3-202ENST00000394272 UNC13AQ9UPW8 1703 aa37■■■■□ 3.51
HDDC3-202ENST00000394272 BICRAQ9NZM4 1560 aa36.6■■■■□ 3.45
HDDC3-202ENST00000394272 PABPN1Q86U42 306 aaKnown RBP eCLIP36.36■■■■□ 3.41
HDDC3-202ENST00000394272 SUPT5HO00267 1087 aaKnown RBP36.24■■■■□ 3.39
HDDC3-202ENST00000394272 CECR2Q9BXF3 1484 aa36.22■■■■□ 3.39
HDDC3-202ENST00000394272 RSF1Q96T23 1441 aaPredicted RBP36.08■■■■□ 3.37
HDDC3-202ENST00000394272 BAZ1AQ9NRL2 1556 aaPredicted RBP36.01■■■■□ 3.35
HDDC3-202ENST00000394272 MROH2BQ7Z745 1585 aa36■■■■□ 3.35
HDDC3-202ENST00000394272 SMARCA4P51532 1647 aa35.89■■■■□ 3.34
HDDC3-202ENST00000394272 WIZO95785 1651 aa35.7■■■■□ 3.31
HDDC3-202ENST00000394272 PEG3Q9GZU2 1588 aa35.49■■■■□ 3.27
HDDC3-202ENST00000394272 EIF4G1Q04637 1599 aaKnown RBP35.49■■■■□ 3.27
HDDC3-202ENST00000394272 TOP2AP11388 1531 aaKnown RBP35.33■■■■□ 3.25
HDDC3-202ENST00000394272 ATAD2BQ9ULI0 1458 aa35.33■■■■□ 3.25
HDDC3-202ENST00000394272 SMARCA2P51531 1590 aa35.31■■■■□ 3.24
HDDC3-202ENST00000394272 BAZ1BQ9UIG0 1483 aaKnown RBP35.1■■■■□ 3.21
HDDC3-202ENST00000394272 NCAPD3P42695 1498 aa35.07■■■■□ 3.2
HDDC3-202ENST00000394272 HMGXB3Q12766 1538 aa35.02■■■■□ 3.2
HDDC3-202ENST00000394272 CC2D2AQ9P2K1 1620 aa35.01■■■■□ 3.19
HDDC3-202ENST00000394272 CCDC88BA6NC98 1476 aa34.94■■■■□ 3.18
HDDC3-202ENST00000394272 CHIC1Q5VXU3 224 aa34.66■■■■□ 3.14
HDDC3-202ENST00000394272 DNAJC5BQ9UF47 199 aa34.24■■■■□ 3.07
HDDC3-202ENST00000394272 CFTRP13569 1480 aa34.23■■■■□ 3.07
HDDC3-202ENST00000394272 ABCC8Q09428 1581 aa34.14■■■■□ 3.06
HDDC3-202ENST00000394272 CADPSQ9ULU8 1353 aa34.13■■■■□ 3.05
HDDC3-202ENST00000394272 TRIM41Q8WV44 630 aa34.12■■■■□ 3.05
HDDC3-202ENST00000394272 PRDM2Q13029 1718 aa34.1■■■■□ 3.05
HDDC3-202ENST00000394272 WRNQ14191 1432 aaPredicted RBP eCLIP33.95■■■■□ 3.03
HDDC3-202ENST00000394272 LAMC3Q9Y6N6 1575 aa33.91■■■■□ 3.02
HDDC3-202ENST00000394272 NESP48681 1621 aa33.88■■■■□ 3.01
HDDC3-202ENST00000394272 SYNJ1O43426 1573 aa33.84■■■■□ 3.01
HDDC3-202ENST00000394272 FANCD2Q9BXW9 1451 aa33.75■■■□□ 2.99
HDDC3-202ENST00000394272 TOP2BQ02880 1626 aa33.74■■■□□ 2.99
HDDC3-202ENST00000394272 BIVM-ERCC5R4GMW8 1640 aa33.71■■■□□ 2.99
HDDC3-202ENST00000394272 CUX1P39880 1505 aa33.67■■■□□ 2.98
HDDC3-202ENST00000394272 PDS5BQ9NTI5 1447 aa33.61■■■□□ 2.97
HDDC3-202ENST00000394272 CEP164Q9UPV0 1460 aa33.55■■■□□ 2.96
HDDC3-202ENST00000394272 KIF21AQ7Z4S6 1674 aa33.52■■■□□ 2.96
HDDC3-202ENST00000394272 SOGA1O94964 1423 aa33.46■■■□□ 2.95
HDDC3-202ENST00000394272 FAM9AQ8IZU1 332 aaPredicted RBP33.45■■■□□ 2.95
HDDC3-202ENST00000394272 DNMBPQ6XZF7 1577 aa33.44■■■□□ 2.94
HDDC3-202ENST00000394272 TOPBP1Q92547 1522 aa33.38■■■□□ 2.93
HDDC3-202ENST00000394272 EEA1Q15075 1411 aa33.37■■■□□ 2.93
HDDC3-202ENST00000394272 URB2Q14146 1524 aaKnown RBP33.36■■■□□ 2.93
HDDC3-202ENST00000394272 RUSC2Q8N2Y8 1516 aa33.35■■■□□ 2.93
HDDC3-202ENST00000394272 FGD5Q6ZNL6 1462 aa33.32■■■□□ 2.92
HDDC3-202ENST00000394272 LOC105371045A0A1W2PR82 267 aa33.29■■■□□ 2.92
HDDC3-202ENST00000394272 POLA1P09884 1462 aaPredicted RBP33.2■■■□□ 2.91
HDDC3-202ENST00000394272 MRC2Q9UBG0 1479 aa33.2■■■□□ 2.91
HDDC3-202ENST00000394272 CSRNP3Q8WYN3 585 aa33.17■■■□□ 2.9
HDDC3-202ENST00000394272 ERCC6Q03468 1493 aa33.13■■■□□ 2.89
HDDC3-202ENST00000394272 KIF27Q86VH2 1401 aa33.1■■■□□ 2.89
HDDC3-202ENST00000394272 WDR62O43379 1518 aa33.08■■■□□ 2.89
HDDC3-202ENST00000394272 RAD54L2Q9Y4B4 1467 aa33.07■■■□□ 2.88
HDDC3-202ENST00000394272 CUX2O14529 1486 aa33.05■■■□□ 2.88
HDDC3-202ENST00000394272 ABCA10Q8WWZ4 1543 aa33.05■■■□□ 2.88
HDDC3-202ENST00000394272 THOC2Q8NI27 1593 aaKnown RBP33.02■■■□□ 2.88
HDDC3-202ENST00000394272 WDR97A6NE52 1622 aa32.99■■■□□ 2.87
HDDC3-202ENST00000394272 KIF21BO75037 1637 aa32.98■■■□□ 2.87
HDDC3-202ENST00000394272 EHMT2Q96KQ7 1210 aa32.94■■■□□ 2.86
HDDC3-202ENST00000394272 TARBP1Q13395 1621 aaKnown RBP32.92■■■□□ 2.86
HDDC3-202ENST00000394272 GOLGA3Q08378 1498 aa32.89■■■□□ 2.86
HDDC3-202ENST00000394272 PRXQ9BXM0 1461 aa32.87■■■□□ 2.85
HDDC3-202ENST00000394272 IGF1RP08069 1367 aa32.84■■■□□ 2.85
HDDC3-202ENST00000394272 ABCA5Q8WWZ7 1642 aa32.81■■■□□ 2.84
HDDC3-202ENST00000394272 RAPGEF2Q9Y4G8 1499 aa32.8■■■□□ 2.84
HDDC3-202ENST00000394272 ERICH3Q5RHP9 1530 aa32.8■■■□□ 2.84
HDDC3-202ENST00000394272 IFT140Q96RY7 1462 aa32.77■■■□□ 2.84
HDDC3-202ENST00000394272 TNIKQ9UKE5 1360 aa32.76■■■□□ 2.83
HDDC3-202ENST00000394272 TDRD9Q8NDG6 1382 aaKnown RBP32.74■■■□□ 2.83
HDDC3-202ENST00000394272 GAPVD1Q14C86 1478 aa32.71■■■□□ 2.83
HDDC3-202ENST00000394272 UBTFP17480 764 aaKnown RBP32.68■■■□□ 2.82
HDDC3-202ENST00000394272 CARMIL1Q5VZK9 1371 aa32.66■■■□□ 2.82
HDDC3-202ENST00000394272 CUL7Q14999 1698 aa32.64■■■□□ 2.81
HDDC3-202ENST00000394272 ZNF608Q9ULD9 1512 aaPredicted RBP32.59■■■□□ 2.81
HDDC3-202ENST00000394272 PBRM1Q86U86 1689 aa32.58■■■□□ 2.81
HDDC3-202ENST00000394272 AQRO60306 1485 aaKnown RBP eCLIP32.58■■■□□ 2.814e-8■■■■■ 34.1
HDDC3-202ENST00000394272 CEP162Q5TB80 1403 aa32.56■■■□□ 2.8
HDDC3-202ENST00000394272 EIF4G3O43432 1585 aaKnown RBP32.51■■■□□ 2.79
HDDC3-202ENST00000394272 GRIN2BQ13224 1484 aa32.48■■■□□ 2.79
HDDC3-202ENST00000394272 ADAMTS12P58397 1594 aa32.38■■■□□ 2.77
HDDC3-202ENST00000394272 FHAD1B1AJZ9 1412 aa32.36■■■□□ 2.77
HDDC3-202ENST00000394272 CLIP1P30622 1438 aa32.34■■■□□ 2.77
HDDC3-202ENST00000394272 SNAPC4Q5SXM2 1469 aa32.29■■■□□ 2.76
HDDC3-202ENST00000394272 CTTNBP2Q8WZ74 1663 aa32.25■■■□□ 2.75
HDDC3-202ENST00000394272 MAGI1Q96QZ7 1491 aaPredicted RBP32.25■■■□□ 2.75
HDDC3-202ENST00000394272 RANGAP1P46060 587 aaPredicted RBP32.16■■■□□ 2.74
HDDC3-202ENST00000394272 SYNJ2O15056 1496 aa32.12■■■□□ 2.73
HDDC3-202ENST00000394272 ARHGAP35Q9NRY4 1499 aa32.12■■■□□ 2.73
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms