Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.522e-7■■■■□ 26.7
LIN28BQ6ZN17 MTX2-203ENST00000423461 618 ntTSL 326.38■■□□□ 1.811e-7■■■■□ 26.7
LIN28BQ6ZN17 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.064e-8■■■■□ 26.7
LIN28BQ6ZN17 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.144e-8■■■■□ 26.7
LIN28BQ6ZN17 KMT5A-204ENST00000437519 1774 ntTSL 213.33□□□□□ -0.284e-8■■■■□ 26.7
LIN28BQ6ZN17 ATAD2-204ENST00000521496 3133 ntTSL 1 (best)10.3□□□□□ -0.763e-8■■■■□ 26.7
LIN28BQ6ZN17 ATAD2-207ENST00000534257 544 ntTSL 44.71□□□□□ -1.663e-8■■■■□ 26.7
LIN28BQ6ZN17 TRIM8-202ENST00000462202 891 ntTSL 524.31■■□□□ 1.488e-17■■■■□ 26.7
LIN28BQ6ZN17 TRIM8-204ENST00000487927 761 ntTSL 323.16■■□□□ 1.38e-17■■■■□ 26.7
LIN28BQ6ZN17 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.418e-17■■■■□ 26.7
LIN28BQ6ZN17 WASF2-202ENST00000618852 5676 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.445e-22■■■■□ 26.7
LIN28BQ6ZN17 RPL13A-208ENST00000477613 796 ntTSL 519.76■□□□□ 0.755e-24■■■■□ 26.7
LIN28BQ6ZN17 RPL13A-206ENST00000476268 1623 ntTSL 318.82■□□□□ 0.65e-24■■■■□ 26.7
LIN28BQ6ZN17 RPL13A-209ENST00000479992 850 ntTSL 317.8■□□□□ 0.445e-24■■■■□ 26.7
LIN28BQ6ZN17 RPL13A-202ENST00000467825 660 ntTSL 517.15■□□□□ 0.345e-24■■■■□ 26.7
LIN28BQ6ZN17 RPL13A-204ENST00000472481 728 ntTSL 216.93■□□□□ 0.35e-24■■■■□ 26.7
LIN28BQ6ZN17 RPL13A-210ENST00000484279 794 ntTSL 515.57■□□□□ 0.085e-24■■■■□ 26.7
LIN28BQ6ZN17 ITGA6-205ENST00000416789 853 ntTSL 39.44□□□□□ -0.91e-9■■■■□ 26.7
LIN28BQ6ZN17 CLTC-202ENST00000393043 5292 ntTSL 1 (best) BASIC12.2□□□□□ -0.463e-7■■■■□ 26.7
LIN28BQ6ZN17 CLTC-215ENST00000621829 8587 ntAPPRIS ALT1 TSL 2 BASIC10.3□□□□□ -0.763e-7■■■■□ 26.7
LIN28BQ6ZN17 CLTC-201ENST00000269122 7760 ntAPPRIS P3 TSL 1 (best) BASIC7.33□□□□□ -1.243e-7■■■■□ 26.7
LIN28BQ6ZN17 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC6.15□□□□□ -1.423e-7■■■■□ 26.7
LIN28BQ6ZN17 COA1-212ENST00000448704 1599 ntTSL 1 (best)18.89■□□□□ 0.618e-8■■■■□ 26.7
LIN28BQ6ZN17 COA1-206ENST00000418140 1372 ntTSL 1 (best)13.65□□□□□ -0.228e-8■■■■□ 26.7
LIN28BQ6ZN17 COA1-214ENST00000457939 406 ntTSL 311.83□□□□□ -0.528e-8■■■■□ 26.7
LIN28BQ6ZN17 COA1-213ENST00000451651 585 ntTSL 311.7□□□□□ -0.548e-8■■■■□ 26.7
LIN28BQ6ZN17 COA1-216ENST00000470156 569 ntTSL 1 (best)6.83□□□□□ -1.328e-8■■■■□ 26.7
LIN28BQ6ZN17 COA1-215ENST00000459713 574 ntTSL 35.11□□□□□ -1.598e-8■■■■□ 26.7
LIN28BQ6ZN17 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.56□□□□□ -1.688e-8■■■■□ 26.7
LIN28BQ6ZN17 NFAT5-210ENST00000567990 2855 ntTSL 514.71□□□□□ -0.062e-12■■■■□ 26.6
LIN28BQ6ZN17 NFAT5-209ENST00000567239 6376 ntAPPRIS ALT1 TSL 1 (best) BASIC10.84□□□□□ -0.672e-12■■■■□ 26.6
LIN28BQ6ZN17 NFAT5-208ENST00000566899 4914 ntAPPRIS ALT1 TSL 1 (best) BASIC8□□□□□ -1.132e-12■■■■□ 26.6
LIN28BQ6ZN17 NFAT5-204ENST00000426654 14219 ntTSL 1 (best)7.08□□□□□ -1.282e-12■■■■□ 26.6
LIN28BQ6ZN17 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC7.01□□□□□ -1.292e-12■■■■□ 26.6
LIN28BQ6ZN17 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC6.12□□□□□ -1.432e-12■■■■□ 26.6
LIN28BQ6ZN17 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.94□□□□□ -1.462e-12■■■■□ 26.6
LIN28BQ6ZN17 NFAT5-207ENST00000565301 653 ntTSL 25.29□□□□□ -1.562e-12■■■■□ 26.6
LIN28BQ6ZN17 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.17□□□□□ -1.742e-12■■■■□ 26.6
LIN28BQ6ZN17 SEPT5-203ENST00000406172 1996 ntTSL 526.16■■□□□ 1.786e-7■■■■□ 26.6
LIN28BQ6ZN17 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC24.92■■□□□ 1.586e-7■■■■□ 26.6
LIN28BQ6ZN17 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.316e-7■■■■□ 26.6
LIN28BQ6ZN17 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.24■□□□□ 0.996e-7■■■■□ 26.6
LIN28BQ6ZN17 SEPT5-212ENST00000470814 2353 ntTSL 520.48■□□□□ 0.876e-7■■■■□ 26.6
LIN28BQ6ZN17 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.87■□□□□ 0.296e-7■■■■□ 26.6
LIN28BQ6ZN17 SEPT5-207ENST00000431044 3173 ntTSL 1 (best)15.74■□□□□ 0.116e-7■■■■□ 26.6
LIN28BQ6ZN17 SEPT5-211ENST00000455843 4113 ntTSL 1 (best)14.5□□□□□ -0.096e-7■■■■□ 26.6
LIN28BQ6ZN17 PKP4-205ENST00000426248 4134 ntTSL 1 (best)16.07■□□□□ 0.161e-6■■■■□ 26.6
LIN28BQ6ZN17 PKP4-204ENST00000421462 3099 ntTSL 215.35■□□□□ 0.051e-6■■■■□ 26.6
LIN28BQ6ZN17 PKP4-206ENST00000452162 2359 ntTSL 1 (best)11.36□□□□□ -0.591e-6■■■■□ 26.6
LIN28BQ6ZN17 PKP4-201ENST00000389757 5777 ntAPPRIS ALT1 TSL 1 (best) BASIC10.16□□□□□ -0.781e-6■■■■□ 26.6
LIN28BQ6ZN17 PKP4-202ENST00000389759 4443 ntAPPRIS P4 TSL 1 (best) BASIC7.99□□□□□ -1.131e-6■■■■□ 26.6
LIN28BQ6ZN17 PKP4-217ENST00000628904 3856 ntTSL 5 BASIC7.62□□□□□ -1.191e-6■■■■□ 26.6
LIN28BQ6ZN17 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.624e-8■■■■□ 26.6
LIN28BQ6ZN17 ELP5-213ENST00000574841 510 ntTSL 222.33■■□□□ 1.174e-8■■■■□ 26.6
LIN28BQ6ZN17 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.76■□□□□ 0.914e-8■■■■□ 26.6
LIN28BQ6ZN17 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.32■□□□□ 0.844e-8■■■■□ 26.6
LIN28BQ6ZN17 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.69■□□□□ 0.744e-8■■■■□ 26.6
LIN28BQ6ZN17 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC19.48■□□□□ 0.714e-8■■■■□ 26.6
LIN28BQ6ZN17 PML-218ENST00000567606 2042 ntTSL 1 (best)19.44■□□□□ 0.74e-8■■■■□ 26.6
LIN28BQ6ZN17 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.96■□□□□ 0.634e-8■■■■□ 26.6
LIN28BQ6ZN17 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.614e-8■■■■□ 26.6
LIN28BQ6ZN17 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.524e-8■■■■□ 26.6
LIN28BQ6ZN17 PCYT1A-209ENST00000441879 724 ntTSL 317.8■□□□□ 0.444e-9■■■■□ 26.6
LIN28BQ6ZN17 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.27■□□□□ 0.364e-8■■■■□ 26.6
LIN28BQ6ZN17 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.352e-7■■■■□ 26.6
LIN28BQ6ZN17 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.354e-8■■■■□ 26.6
LIN28BQ6ZN17 NF2-211ENST00000432151 1000 ntTSL 1 (best)16.32■□□□□ 0.24e-8■■■■□ 26.6
LIN28BQ6ZN17 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.192e-7■■■■□ 26.6
LIN28BQ6ZN17 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.132e-7■■■■□ 26.6
LIN28BQ6ZN17 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC15.45■□□□□ 0.064e-8■■■■□ 26.6
LIN28BQ6ZN17 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.052e-7■■■■□ 26.6
LIN28BQ6ZN17 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.054e-8■■■■□ 26.6
LIN28BQ6ZN17 ELP5-207ENST00000571146 890 ntTSL 315.07■□□□□ 04e-8■■■■□ 26.6
LIN28BQ6ZN17 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.01□□□□□ -0.014e-8■■■■□ 26.6
LIN28BQ6ZN17 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.054e-8■■■■□ 26.6
LIN28BQ6ZN17 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.64□□□□□ -0.074e-8■■■■□ 26.6
LIN28BQ6ZN17 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.084e-8■■■■□ 26.6
LIN28BQ6ZN17 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.094e-8■■■■□ 26.6
LIN28BQ6ZN17 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.114e-8■■■■□ 26.6
LIN28BQ6ZN17 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.214e-8■■■■□ 26.6
LIN28BQ6ZN17 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.224e-8■■■■□ 26.6
LIN28BQ6ZN17 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.234e-8■■■■□ 26.6
LIN28BQ6ZN17 NF2-204ENST00000361166 1837 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.34e-8■■■■□ 26.6
LIN28BQ6ZN17 PML-209ENST00000562086 2232 ntTSL 1 (best)12.61□□□□□ -0.394e-8■■■■□ 26.6
LIN28BQ6ZN17 NF2-207ENST00000397789 1857 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.424e-8■■■■□ 26.6
LIN28BQ6ZN17 PML-207ENST00000435786 3643 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.434e-8■■■■□ 26.6
LIN28BQ6ZN17 PML-210ENST00000563500 4502 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.434e-8■■■■□ 26.6
LIN28BQ6ZN17 NF2-206ENST00000361676 1716 ntTSL 1 (best) BASIC11.47□□□□□ -0.574e-8■■■■□ 26.6
LIN28BQ6ZN17 WASF1-204ENST00000392586 2815 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.652e-7■■■■□ 26.6
LIN28BQ6ZN17 PCYT1A-201ENST00000292823 5597 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.884e-9■■■■□ 26.6
LIN28BQ6ZN17 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC7□□□□□ -1.294e-9■■■■□ 26.6
LIN28BQ6ZN17 CMTR1-206ENST00000493656 550 ntTSL 56.05□□□□□ -1.444e-8■■■■□ 26.6
LIN28BQ6ZN17 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.461e-7■■■■□ 26.6
LIN28BQ6ZN17 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.551e-7■■■■□ 26.6
LIN28BQ6ZN17 ARF1-201ENST00000272102 1888 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.511e-7■■■■□ 26.6
LIN28BQ6ZN17 SNRPE-206ENST00000483099 967 ntTSL 222.82■■□□□ 1.249e-23■■■■□ 26.6
LIN28BQ6ZN17 SNRPE-205ENST00000475035 532 ntTSL 1 (best)9.8□□□□□ -0.849e-23■■■■□ 26.6
LIN28BQ6ZN17 SNRPE-202ENST00000414487 942 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.969e-23■■■■□ 26.6
LIN28BQ6ZN17 SNRPE-204ENST00000470492 478 ntTSL 35.59□□□□□ -1.519e-23■■■■□ 26.6
LIN28BQ6ZN17 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC4.41□□□□□ -1.79e-23■■■■□ 26.6
Retrieved 100 of 21,972 protein–RNA pairs in 109 ms