RNA–Protein interactions for RNA: ENST00000426248.7

PKP4-205, Transcript of plakophilin 4, humanhuman

TSL 1 (best)

Gene PKP4, Length 4,134 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-205ENST00000426248 NISCHQ9Y2I1 1504 aa32.49■■■□□ 2.79
PKP4-205ENST00000426248 DCAF8L2P0C7V8 631 aa29.1■■■□□ 2.25
PKP4-205ENST00000426248 SHROOM4Q9ULL8 1493 aa28.15■■■□□ 2.1
PKP4-205ENST00000426248 CCDC180Q9P1Z9 1646 aa27.61■■■□□ 2.01
PKP4-205ENST00000426248 ABCC9O60706 1549 aa27.5■■□□□ 1.99
PKP4-205ENST00000426248 SUPT5HO00267 1087 aaKnown RBP27.44■■□□□ 1.98
PKP4-205ENST00000426248 ZCCHC6Q5VYS8 1495 aaKnown RBP27.11■■□□□ 1.93
PKP4-205ENST00000426248 PABPN1Q86U42 306 aaKnown RBP eCLIP26.46■■□□□ 1.837e-8■□□□□ 10
PKP4-205ENST00000426248 SCRIBQ14160 1630 aa26.39■■□□□ 1.82
PKP4-205ENST00000426248 DCAF1Q9Y4B6 1507 aa26.26■■□□□ 1.79
PKP4-205ENST00000426248 PELP1Q8IZL8 1130 aaKnown RBP26.21■■□□□ 1.79
PKP4-205ENST00000426248 NACADO15069 1562 aa26.16■■□□□ 1.78
PKP4-205ENST00000426248 HRCP23327 699 aa26.14■■□□□ 1.78
PKP4-205ENST00000426248 RB1CC1Q8TDY2 1594 aa26.12■■□□□ 1.77
PKP4-205ENST00000426248 PPARGC1BQ86YN6 1023 aaKnown RBP25.98■■□□□ 1.75
PKP4-205ENST00000426248 PCGF6Q9BYE7 350 aa25.93■■□□□ 1.74
PKP4-205ENST00000426248 MYO15BQ96JP2 1530 aa25.82■■□□□ 1.72
PKP4-205ENST00000426248 EHMT2Q96KQ7 1210 aa25.68■■□□□ 1.7
PKP4-205ENST00000426248 FAM9AQ8IZU1 332 aaPredicted RBP25.57■■□□□ 1.68
PKP4-205ENST00000426248 CECR2Q9BXF3 1484 aa25.57■■□□□ 1.68
PKP4-205ENST00000426248 TRIM41Q8WV44 630 aa25.52■■□□□ 1.68
PKP4-205ENST00000426248 CHIC1Q5VXU3 224 aa25.51■■□□□ 1.67
PKP4-205ENST00000426248 RSF1Q96T23 1441 aaPredicted RBP25.51■■□□□ 1.67
PKP4-205ENST00000426248 MYT1Q01538 1121 aa25.37■■□□□ 1.65
PKP4-205ENST00000426248 MROH2BQ7Z745 1585 aa25.25■■□□□ 1.63
PKP4-205ENST00000426248 BAZ1AQ9NRL2 1556 aaPredicted RBP25.14■■□□□ 1.62
PKP4-205ENST00000426248 SCAF1Q9H7N4 1312 aaKnown RBP25.1■■□□□ 1.61
PKP4-205ENST00000426248 LOC105371045A0A1W2PR82 267 aa25.01■■□□□ 1.59
PKP4-205ENST00000426248 WIZO95785 1651 aa24.96■■□□□ 1.59
PKP4-205ENST00000426248 BICRAQ9NZM4 1560 aa24.87■■□□□ 1.57
PKP4-205ENST00000426248 BAZ1BQ9UIG0 1483 aaKnown RBP24.85■■□□□ 1.57
PKP4-205ENST00000426248 UNC13AQ9UPW8 1703 aa24.82■■□□□ 1.56
PKP4-205ENST00000426248 SMARCA4P51532 1647 aa24.82■■□□□ 1.56
PKP4-205ENST00000426248 RANGAP1P46060 587 aaPredicted RBP24.81■■□□□ 1.56
PKP4-205ENST00000426248 UBTFP17480 764 aaKnown RBP24.71■■□□□ 1.55
PKP4-205ENST00000426248 ATAD2BQ9ULI0 1458 aa24.67■■□□□ 1.54
PKP4-205ENST00000426248 CCDC88BA6NC98 1476 aa24.67■■□□□ 1.54
PKP4-205ENST00000426248 TTBK1Q5TCY1 1321 aaPredicted RBP24.65■■□□□ 1.54
PKP4-205ENST00000426248 SMARCA2P51531 1590 aa24.58■■□□□ 1.53
PKP4-205ENST00000426248 TOP2AP11388 1531 aaKnown RBP24.58■■□□□ 1.53
PKP4-205ENST00000426248 ZEB1P37275 1124 aaPredicted RBP24.54■■□□□ 1.52
PKP4-205ENST00000426248 GTF3C3Q9Y5Q9 886 aa24.52■■□□□ 1.52
PKP4-205ENST00000426248 EIF4G1Q04637 1599 aaKnown RBP24.52■■□□□ 1.52
PKP4-205ENST00000426248 TRIM26Q12899 539 aaPredicted RBP24.51■■□□□ 1.51
PKP4-205ENST00000426248 CENPBP07199 599 aaPredicted RBP24.47■■□□□ 1.51
PKP4-205ENST00000426248 ACIN1Q9UKV3 1341 aaKnown RBP24.41■■□□□ 1.5
PKP4-205ENST00000426248 NEUROD1Q13562 356 aa24.37■■□□□ 1.49
PKP4-205ENST00000426248 ABCC8Q09428 1581 aa24.33■■□□□ 1.49
PKP4-205ENST00000426248 CSRNP3Q8WYN3 585 aa24.32■■□□□ 1.48
PKP4-205ENST00000426248 WRNQ14191 1432 aaPredicted RBP eCLIP24.31■■□□□ 1.48
PKP4-205ENST00000426248 NCAPD3P42695 1498 aa24.28■■□□□ 1.48
PKP4-205ENST00000426248 APLP2Q06481 763 aa24.25■■□□□ 1.47
PKP4-205ENST00000426248 YTHDC1Q96MU7 727 aaKnown RBP24.22■■□□□ 1.47
PKP4-205ENST00000426248 DNAJC5BQ9UF47 199 aa24.2■■□□□ 1.46
PKP4-205ENST00000426248 CC2D2AQ9P2K1 1620 aa24.18■■□□□ 1.46
PKP4-205ENST00000426248 ATP1B4Q9UN42 357 aaPredicted RBP24.16■■□□□ 1.46
PKP4-205ENST00000426248 CADPSQ9ULU8 1353 aa24.1■■□□□ 1.45
PKP4-205ENST00000426248 SOGA1O94964 1423 aa24.08■■□□□ 1.45
PKP4-205ENST00000426248 PEG3Q9GZU2 1588 aa24.01■■□□□ 1.43
PKP4-205ENST00000426248 HMGXB3Q12766 1538 aa23.98■■□□□ 1.43
PKP4-205ENST00000426248 CCER1Q8TC90 406 aaPredicted RBP23.96■■□□□ 1.43
PKP4-205ENST00000426248 DIEXFQ68CQ4 756 aaKnown RBP23.94■■□□□ 1.42
PKP4-205ENST00000426248 FBLN2P98095 1184 aa23.9■■□□□ 1.42
PKP4-205ENST00000426248 NESP48681 1621 aa23.87■■□□□ 1.41
PKP4-205ENST00000426248 RUSC2Q8N2Y8 1516 aa23.85■■□□□ 1.41
PKP4-205ENST00000426248 P3H3Q8IVL6 736 aa23.84■■□□□ 1.41
PKP4-205ENST00000426248 CFTRP13569 1480 aa23.82■■□□□ 1.4
PKP4-205ENST00000426248 FANCD2Q9BXW9 1451 aa23.82■■□□□ 1.4
PKP4-205ENST00000426248 PDS5BQ9NTI5 1447 aa23.81■■□□□ 1.4
PKP4-205ENST00000426248 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.81■■□□□ 1.4
PKP4-205ENST00000426248 ERCC6Q03468 1493 aa23.8■■□□□ 1.4
PKP4-205ENST00000426248 EEA1Q15075 1411 aa23.79■■□□□ 1.4
PKP4-205ENST00000426248 BCL11AQ9H165 835 aa23.78■■□□□ 1.4
PKP4-205ENST00000426248 KIF27Q86VH2 1401 aa23.78■■□□□ 1.4
PKP4-205ENST00000426248 CUX2O14529 1486 aa23.75■■□□□ 1.39
PKP4-205ENST00000426248 CEP164Q9UPV0 1460 aa23.69■■□□□ 1.38
PKP4-205ENST00000426248 SYNJ1O43426 1573 aa23.68■■□□□ 1.38
PKP4-205ENST00000426248 GOLGA3Q08378 1498 aa23.66■■□□□ 1.38
PKP4-205ENST00000426248 TDRD9Q8NDG6 1382 aaKnown RBP23.66■■□□□ 1.38
PKP4-205ENST00000426248 CEP162Q5TB80 1403 aa23.62■■□□□ 1.37
PKP4-205ENST00000426248 HNRNPUL2Q1KMD3 747 aaKnown RBP23.6■■□□□ 1.37
PKP4-205ENST00000426248 TNIKQ9UKE5 1360 aa23.57■■□□□ 1.36
PKP4-205ENST00000426248 CLIP1P30622 1438 aa23.56■■□□□ 1.36
PKP4-205ENST00000426248 FGD5Q6ZNL6 1462 aa23.55■■□□□ 1.36
PKP4-205ENST00000426248 ITGAEP38570 1179 aa23.54■■□□□ 1.36
PKP4-205ENST00000426248 CARMIL1Q5VZK9 1371 aa23.54■■□□□ 1.36
PKP4-205ENST00000426248 ARID3CA6NKF2 412 aa23.53■■□□□ 1.36
PKP4-205ENST00000426248 RAD54L2Q9Y4B4 1467 aa23.53■■□□□ 1.36
PKP4-205ENST00000426248 CUX1P39880 1505 aa23.53■■□□□ 1.36
PKP4-205ENST00000426248 CHMP7Q8WUX9 453 aaPredicted RBP23.48■■□□□ 1.35
PKP4-205ENST00000426248 RAPGEF2Q9Y4G8 1499 aa23.47■■□□□ 1.35
PKP4-205ENST00000426248 TOP2BQ02880 1626 aa23.42■■□□□ 1.34
PKP4-205ENST00000426248 TOPBP1Q92547 1522 aa23.37■■□□□ 1.33
PKP4-205ENST00000426248 IGF1RP08069 1367 aa23.36■■□□□ 1.33
PKP4-205ENST00000426248 ANP32EQ9BTT0 268 aa23.36■■□□□ 1.33
PKP4-205ENST00000426248 LAMC3Q9Y6N6 1575 aa23.34■■□□□ 1.33
PKP4-205ENST00000426248 POLA1P09884 1462 aaPredicted RBP23.31■■□□□ 1.32
PKP4-205ENST00000426248 AQRO60306 1485 aaKnown RBP eCLIP23.26■■□□□ 1.311e-9■■■■□ 21.4
PKP4-205ENST00000426248 FAM50AQ14320 339 aaKnown RBP23.25■■□□□ 1.31
PKP4-205ENST00000426248 URB2Q14146 1524 aaKnown RBP23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms