Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.682e-7■■■■□ 24.8
UPF1Q92900 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.262e-7■■■■□ 24.8
UPF1Q92900 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC22.07■■□□□ 1.122e-7■■■■□ 24.8
UPF1Q92900 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.86■□□□□ 0.453e-9■■■■□ 24.8
UPF1Q92900 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.443e-9■■■■□ 24.8
UPF1Q92900 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.443e-9■■■■□ 24.8
UPF1Q92900 TMEM184A-209ENST00000449955 2224 ntTSL 221.56■■□□□ 1.042e-6■■■■□ 24.8
UPF1Q92900 ZNF687-202ENST00000336715 4831 ntAPPRIS P1 TSL 1 (best)16.22■□□□□ 0.193e-11■■■■□ 24.7
UPF1Q92900 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.053e-11■■■■□ 24.7
UPF1Q92900 ZNF687-203ENST00000426871 3277 ntTSL 212.78□□□□□ -0.363e-11■■■■□ 24.7
UPF1Q92900 ZNF687-206ENST00000449313 4185 ntTSL 512.01□□□□□ -0.493e-11■■■■□ 24.7
UPF1Q92900 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.178e-7■■■■□ 24.7
UPF1Q92900 DNAJC22-204ENST00000552651 458 ntTSL 312.08□□□□□ -0.488e-8■■■■□ 24.7
UPF1Q92900 DNAJC22-203ENST00000551153 490 ntTSL 36.29□□□□□ -1.48e-8■■■■□ 24.7
UPF1Q92900 COPZ1-201ENST00000262061 1897 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.313e-14■■■■□ 24.7
UPF1Q92900 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC22.54■■□□□ 1.22e-7■■■■□ 24.7
UPF1Q92900 TMEM33-202ENST00000325094 6221 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.681e-9■■■■□ 24.7
UPF1Q92900 TMEM33-203ENST00000504986 7482 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.751e-9■■■■□ 24.7
UPF1Q92900 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.065e-7■■■■□ 24.7
UPF1Q92900 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.075e-7■■■■□ 24.7
UPF1Q92900 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.955e-7■■■■□ 24.7
UPF1Q92900 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.85e-7■■■■□ 24.7
UPF1Q92900 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.85e-7■■■■□ 24.7
UPF1Q92900 PTDSS1-201ENST00000337004 2366 ntTSL 1 (best)21.03■□□□□ 0.967e-8■■■■□ 24.7
UPF1Q92900 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.417e-8■■■■□ 24.7
UPF1Q92900 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.433e-8■■■■□ 24.7
UPF1Q92900 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC29.85■■■□□ 2.373e-8■■■■□ 24.7
UPF1Q92900 SIGMAR1-202ENST00000353468 1582 ntTSL 1 (best)25.16■■□□□ 1.623e-8■■■■□ 24.7
UPF1Q92900 OGFOD3-209ENST00000582146 340 ntTSL 320.85■□□□□ 0.935e-7■■■■□ 24.7
UPF1Q92900 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC25.31■■□□□ 1.643e-8■■■■□ 24.6
UPF1Q92900 PDXDC1-216ENST00000569715 3775 ntTSL 1 (best) BASIC12.93□□□□□ -0.343e-8■■■■□ 24.6
UPF1Q92900 PDXDC1-217ENST00000570001 4828 ntTSL 212.26□□□□□ -0.453e-8■■■■□ 24.6
UPF1Q92900 PDXDC1-202ENST00000396410 4521 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.53e-8■■■■□ 24.6
UPF1Q92900 PDXDC1-203ENST00000450288 4171 ntTSL 5 BASIC9.27□□□□□ -0.933e-8■■■■□ 24.6
UPF1Q92900 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC21.59■■□□□ 1.055e-23■■■■□ 24.6
UPF1Q92900 PPFIA3-209ENST00000602783 980 ntTSL 1 (best)31.25■■■□□ 2.592e-7■■■■□ 24.6
UPF1Q92900 PPFIA3-212ENST00000602897 1615 ntTSL 229.38■■■□□ 2.292e-7■■■■□ 24.6
UPF1Q92900 PPFIA3-211ENST00000602848 1638 ntTSL 1 (best)27.36■■□□□ 1.972e-7■■■■□ 24.6
UPF1Q92900 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.212e-7■■■■□ 24.6
UPF1Q92900 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC15.69■□□□□ 0.12e-7■■■■□ 24.6
UPF1Q92900 KIAA0100-202ENST00000528896 7407 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.61e-6■■■■□ 24.6
UPF1Q92900 NFYA-201ENST00000341376 3811 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.881e-6■■■■□ 24.6
UPF1Q92900 PYGO2-202ENST00000368457 3146 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.48e-10■■■■□ 24.6
UPF1Q92900 PREB-203ENST00000416802 564 ntTSL 434.01■■■■□ 3.033e-7■■■■□ 24.6
UPF1Q92900 PREB-209ENST00000474802 1283 ntTSL 526.49■■□□□ 1.833e-7■■■■□ 24.6
UPF1Q92900 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.543e-7■■■■□ 24.6
UPF1Q92900 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.433e-7■■■■□ 24.6
UPF1Q92900 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC19.66■□□□□ 0.743e-7■■■■□ 24.6
UPF1Q92900 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.639e-7■■■■□ 24.6
UPF1Q92900 SCNN1A-202ENST00000338748 2203 ntTSL 317.92■□□□□ 0.463e-7■■■■□ 24.6
UPF1Q92900 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.299e-7■■■■□ 24.6
UPF1Q92900 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.293e-7■■■■□ 24.6
UPF1Q92900 RHBDL2-201ENST00000289248 2129 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.073e-7■■■■□ 24.6
UPF1Q92900 RHBDL2-202ENST00000372990 1837 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.033e-7■■■■□ 24.6
UPF1Q92900 TBC1D2B-206ENST00000465531 547 ntTSL 413.46□□□□□ -0.259e-7■■■■□ 24.6
UPF1Q92900 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.33e-7■■■■□ 24.6
UPF1Q92900 TBC1D2B-203ENST00000418039 4395 nt11.78□□□□□ -0.529e-7■■■■□ 24.6
UPF1Q92900 SNX33-202ENST00000569152 2265 ntTSL 217.24■□□□□ 0.353e-7■■■■□ 24.6
UPF1Q92900 SNX33-201ENST00000308527 8008 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.43e-7■■■■□ 24.6
UPF1Q92900 TK2-219ENST00000568170 422 ntTSL 312.33□□□□□ -0.441e-7■■■■□ 24.6
UPF1Q92900 STARD7-202ENST00000443962 742 ntTSL 526.92■■□□□ 1.93e-11■■■■□ 24.6
UPF1Q92900 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.044e-7■■■■□ 24.6
UPF1Q92900 CAPN1-220ENST00000530567 1415 ntTSL 228.32■■■□□ 2.122e-10■■■■□ 24.6
UPF1Q92900 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.862e-10■■■■□ 24.6
UPF1Q92900 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.592e-10■■■■□ 24.6
UPF1Q92900 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.132e-10■■■■□ 24.6
UPF1Q92900 CAPN1-208ENST00000527323 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.192e-10■■■■□ 24.6
UPF1Q92900 CAPN1-214ENST00000528165 2828 ntTSL 213.81□□□□□ -0.22e-10■■■■□ 24.6
UPF1Q92900 CAPN1-202ENST00000524773 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.272e-10■■■■□ 24.6
UPF1Q92900 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.362e-7■■■■□ 24.6
UPF1Q92900 WIPF2-206ENST00000582781 3163 ntTSL 1 (best)14.58□□□□□ -0.082e-7■■■■□ 24.6
UPF1Q92900 CEACAM19-205ENST00000591979 608 ntTSL 218.25■□□□□ 0.513e-8■■■■□ 24.6
UPF1Q92900 CEACAM19-207ENST00000618372 972 ntTSL 518.25■□□□□ 0.513e-8■■■■□ 24.6
UPF1Q92900 CEACAM19-206ENST00000592789 475 ntTSL 218.25■□□□□ 0.513e-8■■■■□ 24.6
UPF1Q92900 CEACAM19-209ENST00000622237 835 ntTSL 516.38■□□□□ 0.213e-8■■■■□ 24.6
UPF1Q92900 CEACAM19-208ENST00000619799 828 ntTSL 56.68□□□□□ -1.343e-8■■■■□ 24.6
UPF1Q92900 CIAO1-201ENST00000272402 3588 ntTSL 212.67□□□□□ -0.383e-7■■■■□ 24.6
UPF1Q92900 MICAL2-220ENST00000530021 5233 ntTSL 212.83□□□□□ -0.363e-7■■■■□ 24.6
UPF1Q92900 MICAL2-201ENST00000256194 3906 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.543e-7■■■■□ 24.6
UPF1Q92900 MICAL2-231ENST00000537344 3774 ntAPPRIS P3 TSL 5 BASIC11.39□□□□□ -0.593e-7■■■■□ 24.6
UPF1Q92900 MICAL2-203ENST00000379612 6625 ntTSL 1 (best) BASIC10.94□□□□□ -0.663e-7■■■■□ 24.6
UPF1Q92900 MICAL2-209ENST00000525444 489 ntTSL 210.85□□□□□ -0.673e-7■■■■□ 24.6
UPF1Q92900 MICAL2-210ENST00000525618 3982 ntTSL 29.92□□□□□ -0.823e-7■■■■□ 24.6
UPF1Q92900 MICAL2-221ENST00000530691 6307 ntTSL 1 (best)9.25□□□□□ -0.933e-7■■■■□ 24.6
UPF1Q92900 MICAL2-202ENST00000342902 3711 ntAPPRIS ALT2 TSL 2 BASIC8.52□□□□□ -1.053e-7■■■■□ 24.6
UPF1Q92900 MAPK3-215ENST00000494643 498 ntTSL 212.61□□□□□ -0.395e-9■■■■□ 24.6
UPF1Q92900 TNFRSF10B-201ENST00000276431 4146 ntAPPRIS P4 TSL 1 (best) BASIC10.93□□□□□ -0.661e-7■■■■□ 24.5
UPF1Q92900 TNFRSF10B-208ENST00000523752 3328 ntTSL 1 (best)9.08□□□□□ -0.961e-7■■■■□ 24.5
UPF1Q92900 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC16.63■□□□□ 0.253e-7■■■■□ 24.5
UPF1Q92900 SLC39A11-201ENST00000255559 2737 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.083e-7■■■■□ 24.5
UPF1Q92900 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.668e-22■■■■□ 24.5
UPF1Q92900 ASAH2B-202ENST00000374007 3715 ntAPPRIS P1 TSL 3 BASIC11.95□□□□□ -0.57e-9■■■■□ 24.5
UPF1Q92900 ASAH2B-203ENST00000483649 871 ntTSL 311.82□□□□□ -0.527e-9■■■■□ 24.5
UPF1Q92900 DCAF11-215ENST00000558914 2342 ntTSL 215.3■□□□□ 0.044e-10■■■■□ 24.5
UPF1Q92900 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.047e-16■■■■□ 24.5
UPF1Q92900 TMED8-201ENST00000216468 7784 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.123e-7■■■■□ 24.5
UPF1Q92900 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC23.69■■□□□ 1.381e-7■■■■□ 24.5
UPF1Q92900 NINJ1-202ENST00000461162 861 ntTSL 218.8■□□□□ 0.68e-8■■■■□ 24.5
UPF1Q92900 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.525e-8■■■■□ 24.5
UPF1Q92900 CSRP1-219ENST00000533432 1149 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.415e-7■■■■□ 24.5
Retrieved 100 of 15,879 protein–RNA pairs in 23.9 ms