RNA–Protein interactions for RNA: ENST00000602783.1

PPFIA3-209, Transcript of PTPRF interacting protein alpha 3, humanhuman

TSL 1 (best)

Gene PPFIA3, Length 980 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPFIA3-209ENST00000602783 NISCHQ9Y2I1 1504 aa52.77■■■■■ 6.04
PPFIA3-209ENST00000602783 ABCC9O60706 1549 aa47.23■■■■■ 5.15
PPFIA3-209ENST00000602783 CCDC180Q9P1Z9 1646 aa47.21■■■■■ 5.15
PPFIA3-209ENST00000602783 RB1CC1Q8TDY2 1594 aa44.94■■■■■ 4.79
PPFIA3-209ENST00000602783 DCAF8L2P0C7V8 631 aa44.67■■■■■ 4.74
PPFIA3-209ENST00000602783 NACADO15069 1562 aa44.66■■■■■ 4.74
PPFIA3-209ENST00000602783 DNAJC5BQ9UF47 199 aa44.25■■■■■ 4.67
PPFIA3-209ENST00000602783 MYO15BQ96JP2 1530 aa44.07■■■■■ 4.65
PPFIA3-209ENST00000602783 PABPN1Q86U42 306 aaKnown RBP eCLIP44.06■■■■■ 4.645e-6■■■■□ 22.2
PPFIA3-209ENST00000602783 UNC13AQ9UPW8 1703 aa43.88■■■■■ 4.62
PPFIA3-209ENST00000602783 ZCCHC6Q5VYS8 1495 aaKnown RBP43.73■■■■■ 4.59
PPFIA3-209ENST00000602783 BICRAQ9NZM4 1560 aa43.62■■■■■ 4.57
PPFIA3-209ENST00000602783 DCAF1Q9Y4B6 1507 aa43.56■■■■■ 4.56
PPFIA3-209ENST00000602783 SCRIBQ14160 1630 aa43.1■■■■■ 4.49
PPFIA3-209ENST00000602783 SHROOM4Q9ULL8 1493 aa43.01■■■■■ 4.48
PPFIA3-209ENST00000602783 CC2D2AQ9P2K1 1620 aa42.62■■■■■ 4.41
PPFIA3-209ENST00000602783 EIF4G1Q04637 1599 aaKnown RBP42.56■■■■■ 4.4
PPFIA3-209ENST00000602783 CECR2Q9BXF3 1484 aa42.51■■■■■ 4.4
PPFIA3-209ENST00000602783 NCAPD3P42695 1498 aa41.27■■■■■ 4.2
PPFIA3-209ENST00000602783 ATAD2BQ9ULI0 1458 aa41.16■■■■■ 4.18
PPFIA3-209ENST00000602783 SMARCA4P51532 1647 aa41.11■■■■■ 4.17
PPFIA3-209ENST00000602783 SMARCA2P51531 1590 aa41.03■■■■■ 4.16
PPFIA3-209ENST00000602783 BAZ1AQ9NRL2 1556 aaPredicted RBP40.94■■■■■ 4.14
PPFIA3-209ENST00000602783 HMGXB3Q12766 1538 aa40.92■■■■■ 4.14
PPFIA3-209ENST00000602783 BAZ1BQ9UIG0 1483 aaKnown RBP40.77■■■■■ 4.12
PPFIA3-209ENST00000602783 ERCC6Q03468 1493 aa40.77■■■■■ 4.12
PPFIA3-209ENST00000602783 PEG3Q9GZU2 1588 aa40.69■■■■■ 4.1
PPFIA3-209ENST00000602783 MROH2BQ7Z745 1585 aa40.68■■■■■ 4.1
PPFIA3-209ENST00000602783 CUX2O14529 1486 aa40.6■■■■■ 4.09
PPFIA3-209ENST00000602783 NESP48681 1621 aa40.6■■■■■ 4.09
PPFIA3-209ENST00000602783 DNAJC5Q9H3Z4 198 aa40.52■■■■■ 4.08
PPFIA3-209ENST00000602783 LAMC3Q9Y6N6 1575 aa40.28■■■■■ 4.04
PPFIA3-209ENST00000602783 WIZO95785 1651 aa40.18■■■■■ 4.02
PPFIA3-209ENST00000602783 PDS5BQ9NTI5 1447 aa40.1■■■■■ 4.01
PPFIA3-209ENST00000602783 THOC2Q8NI27 1593 aaKnown RBP40.08■■■■■ 4.01
PPFIA3-209ENST00000602783 CADPSQ9ULU8 1353 aa40.06■■■■■ 4
PPFIA3-209ENST00000602783 KIF21AQ7Z4S6 1674 aa40.01■■■■■ 4
PPFIA3-209ENST00000602783 RSF1Q96T23 1441 aaPredicted RBP39.91■■■■□ 3.98
PPFIA3-209ENST00000602783 MRC2Q9UBG0 1479 aa39.72■■■■□ 3.95
PPFIA3-209ENST00000602783 TOP2AP11388 1531 aaKnown RBP39.66■■■■□ 3.94
PPFIA3-209ENST00000602783 CFTRP13569 1480 aa39.59■■■■□ 3.93
PPFIA3-209ENST00000602783 CEP164Q9UPV0 1460 aa39.59■■■■□ 3.93
PPFIA3-209ENST00000602783 FANCD2Q9BXW9 1451 aa39.58■■■■□ 3.93
PPFIA3-209ENST00000602783 WDR62O43379 1518 aa39.58■■■■□ 3.93
PPFIA3-209ENST00000602783 CCDC88BA6NC98 1476 aa39.27■■■■□ 3.88
PPFIA3-209ENST00000602783 URB2Q14146 1524 aaKnown RBP39.23■■■■□ 3.87
PPFIA3-209ENST00000602783 PRDM2Q13029 1718 aa39.1■■■■□ 3.85
PPFIA3-209ENST00000602783 OSCARQ8IYS5 282 aa38.88■■■■□ 3.81
PPFIA3-209ENST00000602783 TRIM41Q8WV44 630 aa38.85■■■■□ 3.81
PPFIA3-209ENST00000602783 TOPBP1Q92547 1522 aa38.83■■■■□ 3.81
PPFIA3-209ENST00000602783 IFT140Q96RY7 1462 aa38.8■■■■□ 3.8
PPFIA3-209ENST00000602783 ABCC8Q09428 1581 aa38.75■■■■□ 3.79
PPFIA3-209ENST00000602783 ZNF608Q9ULD9 1512 aaPredicted RBP38.74■■■■□ 3.79
PPFIA3-209ENST00000602783 DNMBPQ6XZF7 1577 aa38.67■■■■□ 3.78
PPFIA3-209ENST00000602783 EIF4G3O43432 1585 aaKnown RBP38.47■■■■□ 3.75
PPFIA3-209ENST00000602783 AQRO60306 1485 aaKnown RBP eCLIP38.44■■■■□ 3.74
PPFIA3-209ENST00000602783 POLA1P09884 1462 aaPredicted RBP38.44■■■■□ 3.74
PPFIA3-209ENST00000602783 TARBP1Q13395 1621 aaKnown RBP38.44■■■■□ 3.74
PPFIA3-209ENST00000602783 SUPT5HO00267 1087 aaKnown RBP38.35■■■■□ 3.73
PPFIA3-209ENST00000602783 RAD54L2Q9Y4B4 1467 aa38.34■■■■□ 3.73
PPFIA3-209ENST00000602783 SOGA1O94964 1423 aa38.32■■■■□ 3.73
PPFIA3-209ENST00000602783 RIMBP3CA6NJZ7 1639 aa38.25■■■■□ 3.71
PPFIA3-209ENST00000602783 RIMBP3BA6NNM3 1639 aa38.25■■■■□ 3.71
PPFIA3-209ENST00000602783 TDRD9Q8NDG6 1382 aaKnown RBP38.25■■■■□ 3.71
PPFIA3-209ENST00000602783 RIMBP3Q9UFD9 1639 aa38.25■■■■□ 3.71
PPFIA3-209ENST00000602783 FBLN2P98095 1184 aa38.24■■■■□ 3.71
PPFIA3-209ENST00000602783 FGD5Q6ZNL6 1462 aa38.22■■■■□ 3.71
PPFIA3-209ENST00000602783 CUX1P39880 1505 aa38.2■■■■□ 3.71
PPFIA3-209ENST00000602783 CHD1O14646 1710 aa38.16■■■■□ 3.7
PPFIA3-209ENST00000602783 ARHGEF11O15085 1522 aa38.16■■■■□ 3.7
PPFIA3-209ENST00000602783 WDR97A6NE52 1622 aa38.02■■■■□ 3.68
PPFIA3-209ENST00000602783 SNAPC4Q5SXM2 1469 aa38.01■■■■□ 3.67
PPFIA3-209ENST00000602783 CYB5RLQ6IPT4 315 aa37.98■■■■□ 3.67
PPFIA3-209ENST00000602783 CHMP7Q8WUX9 453 aaPredicted RBP37.96■■■■□ 3.67
PPFIA3-209ENST00000602783 GRIN2BQ13224 1484 aa37.93■■■■□ 3.66
PPFIA3-209ENST00000602783 MAGI1Q96QZ7 1491 aaPredicted RBP37.9■■■■□ 3.66
PPFIA3-209ENST00000602783 GAPVD1Q14C86 1478 aa37.83■■■■□ 3.65
PPFIA3-209ENST00000602783 ARAP1Q96P48 1450 aa37.79■■■■□ 3.64
PPFIA3-209ENST00000602783 ABCA10Q8WWZ4 1543 aa37.79■■■■□ 3.64
PPFIA3-209ENST00000602783 SYNJ2O15056 1496 aa37.78■■■■□ 3.64
PPFIA3-209ENST00000602783 SYNJ1O43426 1573 aa37.75■■■■□ 3.63
PPFIA3-209ENST00000602783 CLASP1Q7Z460 1538 aa37.73■■■■□ 3.63
PPFIA3-209ENST00000602783 PBRM1Q86U86 1689 aa37.72■■■■□ 3.63
PPFIA3-209ENST00000602783 WRNQ14191 1432 aaPredicted RBP eCLIP37.7■■■■□ 3.62
PPFIA3-209ENST00000602783 ABCA5Q8WWZ7 1642 aa37.67■■■■□ 3.62
PPFIA3-209ENST00000602783 TOP2BQ02880 1626 aa37.6■■■■□ 3.61
PPFIA3-209ENST00000602783 BIVM-ERCC5R4GMW8 1640 aa37.58■■■■□ 3.61
PPFIA3-209ENST00000602783 TRHP20396 242 aaPredicted RBP37.53■■■■□ 3.6
PPFIA3-209ENST00000602783 GRIN2AQ12879 1464 aa37.43■■■■□ 3.58
PPFIA3-209ENST00000602783 ADAMTS12P58397 1594 aa37.38■■■■□ 3.58
PPFIA3-209ENST00000602783 FHAD1B1AJZ9 1412 aa37.36■■■■□ 3.57
PPFIA3-209ENST00000602783 ERICH3Q5RHP9 1530 aa37.31■■■■□ 3.56
PPFIA3-209ENST00000602783 NUP160Q12769 1436 aa37.3■■■■□ 3.56
PPFIA3-209ENST00000602783 CEP170Q5SW79 1584 aa37.27■■■■□ 3.56
PPFIA3-209ENST00000602783 ERCC6L2Q5T890 1561 aa37.2■■■■□ 3.55
PPFIA3-209ENST00000602783 SHROOM2Q13796 1616 aa37.07■■■■□ 3.53
PPFIA3-209ENST00000602783 JPH4Q96JJ6 628 aa37.02■■■■□ 3.52
PPFIA3-209ENST00000602783 PRG4Q92954 1404 aaPredicted RBP36.98■■■■□ 3.51
PPFIA3-209ENST00000602783 IGF1RP08069 1367 aa36.93■■■■□ 3.5
PPFIA3-209ENST00000602783 KIF27Q86VH2 1401 aa36.93■■■■□ 3.5
Retrieved 100 of 20,778 RNA–protein pairs in 107.2 ms