Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.27■□□□□ 0.68
UPK1AO00322 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
UPK1AO00322 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
UPK1AO00322 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.27■□□□□ 0.68
UPK1AO00322 SMG8-203ENST00000578922 2178 ntBASIC19.27■□□□□ 0.68
UPK1AO00322 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
UPK1AO00322 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
UPK1AO00322 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
UPK1AO00322 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
UPK1AO00322 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
UPK1AO00322 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
UPK1AO00322 AC116050.2-201ENST00000612102 1779 ntBASIC19.27■□□□□ 0.67
UPK1AO00322 AL020996.1-203ENST00000536896 2307 ntBASIC19.26■□□□□ 0.67
UPK1AO00322 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
UPK1AO00322 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
UPK1AO00322 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
UPK1AO00322 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
UPK1AO00322 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
UPK1AO00322 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
UPK1AO00322 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
UPK1AO00322 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.26■□□□□ 0.67
UPK1AO00322 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
UPK1AO00322 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.26■□□□□ 0.67
UPK1AO00322 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.26■□□□□ 0.67
UPK1AO00322 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.26■□□□□ 0.67
UPK1AO00322 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.26■□□□□ 0.67
UPK1AO00322 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.26■□□□□ 0.67
UPK1AO00322 AC137761.2-201ENST00000561729 223 ntBASIC19.26■□□□□ 0.67
UPK1AO00322 AC145350.3-201ENST00000569033 163 ntBASIC19.26■□□□□ 0.67
UPK1AO00322 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
UPK1AO00322 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
UPK1AO00322 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
UPK1AO00322 FP700111.2-201ENST00000619190 1892 ntBASIC19.26■□□□□ 0.67
UPK1AO00322 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
UPK1AO00322 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
UPK1AO00322 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
UPK1AO00322 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.25■□□□□ 0.67
UPK1AO00322 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
UPK1AO00322 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.25■□□□□ 0.67
UPK1AO00322 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
UPK1AO00322 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
UPK1AO00322 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
UPK1AO00322 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
UPK1AO00322 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
UPK1AO00322 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
UPK1AO00322 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.25■□□□□ 0.67
UPK1AO00322 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.25■□□□□ 0.67
UPK1AO00322 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
UPK1AO00322 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
UPK1AO00322 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
UPK1AO00322 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
UPK1AO00322 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.25■□□□□ 0.67
UPK1AO00322 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.25■□□□□ 0.67
UPK1AO00322 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
UPK1AO00322 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
UPK1AO00322 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.24■□□□□ 0.67
UPK1AO00322 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
UPK1AO00322 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.24■□□□□ 0.67
UPK1AO00322 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.24■□□□□ 0.67
UPK1AO00322 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
UPK1AO00322 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
UPK1AO00322 KRT18P11-201ENST00000435214 1283 ntBASIC19.24■□□□□ 0.67
UPK1AO00322 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
UPK1AO00322 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.24■□□□□ 0.67
UPK1AO00322 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.24■□□□□ 0.67
UPK1AO00322 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
UPK1AO00322 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
UPK1AO00322 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
UPK1AO00322 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
UPK1AO00322 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
UPK1AO00322 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
UPK1AO00322 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.23■□□□□ 0.67
UPK1AO00322 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.23■□□□□ 0.67
UPK1AO00322 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.23■□□□□ 0.67
UPK1AO00322 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
UPK1AO00322 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
UPK1AO00322 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
UPK1AO00322 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.23■□□□□ 0.67
UPK1AO00322 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
UPK1AO00322 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.23■□□□□ 0.67
UPK1AO00322 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.23■□□□□ 0.67
UPK1AO00322 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.23■□□□□ 0.67
UPK1AO00322 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.23■□□□□ 0.67
UPK1AO00322 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
UPK1AO00322 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.23■□□□□ 0.67
UPK1AO00322 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
UPK1AO00322 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
UPK1AO00322 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
UPK1AO00322 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.23■□□□□ 0.67
UPK1AO00322 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
UPK1AO00322 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
UPK1AO00322 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
UPK1AO00322 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UPK1AO00322 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
UPK1AO00322 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UPK1AO00322 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
UPK1AO00322 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.22■□□□□ 0.67
UPK1AO00322 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
UPK1AO00322 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UPK1AO00322 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms