RNA–Protein interactions for RNA: ENST00000295886.4

NKX6-1-201, Transcript of NK6 homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NKX6-1, Length 2,628 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-1-201ENST00000295886 NISCHQ9Y2I1 1504 aa40.2■■■■■ 4.03
NKX6-1-201ENST00000295886 SHROOM4Q9ULL8 1493 aa34.73■■■■□ 3.15
NKX6-1-201ENST00000295886 SUPT5HO00267 1087 aaKnown RBP34.08■■■■□ 3.05
NKX6-1-201ENST00000295886 ZCCHC6Q5VYS8 1495 aaKnown RBP34■■■■□ 3.03
NKX6-1-201ENST00000295886 CCDC180Q9P1Z9 1646 aa33.95■■■■□ 3.03
NKX6-1-201ENST00000295886 DCAF8L2P0C7V8 631 aa33.71■■■□□ 2.99
NKX6-1-201ENST00000295886 CHIC1Q5VXU3 224 aa33.03■■■□□ 2.88
NKX6-1-201ENST00000295886 MYO15BQ96JP2 1530 aa32.98■■■□□ 2.87
NKX6-1-201ENST00000295886 DCAF1Q9Y4B6 1507 aa32.8■■■□□ 2.84
NKX6-1-201ENST00000295886 PCGF6Q9BYE7 350 aa32.23■■■□□ 2.75
NKX6-1-201ENST00000295886 LOC105371045A0A1W2PR82 267 aa32.21■■■□□ 2.75
NKX6-1-201ENST00000295886 HRCP23327 699 aa32.15■■■□□ 2.74
NKX6-1-201ENST00000295886 SCRIBQ14160 1630 aa32.15■■■□□ 2.74
NKX6-1-201ENST00000295886 ABCC9O60706 1549 aa32.09■■■□□ 2.73
NKX6-1-201ENST00000295886 RSF1Q96T23 1441 aaPredicted RBP31.93■■■□□ 2.7
NKX6-1-201ENST00000295886 PPARGC1BQ86YN6 1023 aaKnown RBP31.7■■■□□ 2.67
NKX6-1-201ENST00000295886 RB1CC1Q8TDY2 1594 aa31.65■■■□□ 2.66
NKX6-1-201ENST00000295886 TRIM41Q8WV44 630 aa31.61■■■□□ 2.65
NKX6-1-201ENST00000295886 FAM9AQ8IZU1 332 aaPredicted RBP31.55■■■□□ 2.64
NKX6-1-201ENST00000295886 CECR2Q9BXF3 1484 aa31.51■■■□□ 2.64
NKX6-1-201ENST00000295886 NACADO15069 1562 aa31.43■■■□□ 2.62
NKX6-1-201ENST00000295886 EHMT2Q96KQ7 1210 aa31.43■■■□□ 2.62
NKX6-1-201ENST00000295886 TRIM26Q12899 539 aaPredicted RBP31.42■■■□□ 2.62
NKX6-1-201ENST00000295886 MROH2BQ7Z745 1585 aa31.36■■■□□ 2.61
NKX6-1-201ENST00000295886 WIZO95785 1651 aa31.2■■■□□ 2.58
NKX6-1-201ENST00000295886 BAZ1AQ9NRL2 1556 aaPredicted RBP30.87■■■□□ 2.53
NKX6-1-201ENST00000295886 EIF4G1Q04637 1599 aaKnown RBP30.69■■■□□ 2.5
NKX6-1-201ENST00000295886 ZEB1P37275 1124 aaPredicted RBP30.64■■■□□ 2.5
NKX6-1-201ENST00000295886 ABCC8Q09428 1581 aa30.62■■■□□ 2.49
NKX6-1-201ENST00000295886 SMARCA4P51532 1647 aa30.59■■■□□ 2.49
NKX6-1-201ENST00000295886 TOP2AP11388 1531 aaKnown RBP30.58■■■□□ 2.49
NKX6-1-201ENST00000295886 CCDC88BA6NC98 1476 aa30.57■■■□□ 2.48
NKX6-1-201ENST00000295886 UNC13AQ9UPW8 1703 aa30.54■■■□□ 2.48
NKX6-1-201ENST00000295886 PABPN1Q86U42 306 aaKnown RBP eCLIP30.5■■■□□ 2.47
NKX6-1-201ENST00000295886 SMARCA2P51531 1590 aa30.47■■■□□ 2.47
NKX6-1-201ENST00000295886 TTBK1Q5TCY1 1321 aaPredicted RBP30.41■■■□□ 2.46
NKX6-1-201ENST00000295886 SOGA1O94964 1423 aa30.36■■■□□ 2.45
NKX6-1-201ENST00000295886 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.34■■■□□ 2.45
NKX6-1-201ENST00000295886 RUSC2Q8N2Y8 1516 aa30.23■■■□□ 2.43
NKX6-1-201ENST00000295886 CEP162Q5TB80 1403 aa30.2■■■□□ 2.42
NKX6-1-201ENST00000295886 CCER1Q8TC90 406 aaPredicted RBP30.18■■■□□ 2.42
NKX6-1-201ENST00000295886 BICRAQ9NZM4 1560 aa30.18■■■□□ 2.42
NKX6-1-201ENST00000295886 UBTFP17480 764 aaKnown RBP30.14■■■□□ 2.42
NKX6-1-201ENST00000295886 CSRNP3Q8WYN3 585 aa30.13■■■□□ 2.41
NKX6-1-201ENST00000295886 TNIKQ9UKE5 1360 aa30.05■■■□□ 2.4
NKX6-1-201ENST00000295886 WRNQ14191 1432 aaPredicted RBP eCLIP30.04■■■□□ 2.4
NKX6-1-201ENST00000295886 EEA1Q15075 1411 aa29.95■■■□□ 2.39
NKX6-1-201ENST00000295886 PELP1Q8IZL8 1130 aaKnown RBP29.88■■■□□ 2.37
NKX6-1-201ENST00000295886 PEG3Q9GZU2 1588 aa29.88■■■□□ 2.37
NKX6-1-201ENST00000295886 GOLGA3Q08378 1498 aa29.87■■■□□ 2.37
NKX6-1-201ENST00000295886 SYNJ1O43426 1573 aa29.85■■■□□ 2.37
NKX6-1-201ENST00000295886 ATAD2BQ9ULI0 1458 aa29.83■■■□□ 2.37
NKX6-1-201ENST00000295886 SCAF1Q9H7N4 1312 aaKnown RBP29.77■■■□□ 2.36
NKX6-1-201ENST00000295886 BAZ1BQ9UIG0 1483 aaKnown RBP29.77■■■□□ 2.36
NKX6-1-201ENST00000295886 RANGAP1P46060 587 aaPredicted RBP29.73■■■□□ 2.35
NKX6-1-201ENST00000295886 CEP164Q9UPV0 1460 aa29.68■■■□□ 2.34
NKX6-1-201ENST00000295886 CLIP1P30622 1438 aa29.61■■■□□ 2.33
NKX6-1-201ENST00000295886 DIEXFQ68CQ4 756 aaKnown RBP29.6■■■□□ 2.33
NKX6-1-201ENST00000295886 HNRNPUL2Q1KMD3 747 aaKnown RBP29.59■■■□□ 2.33
NKX6-1-201ENST00000295886 RAPGEF2Q9Y4G8 1499 aa29.57■■■□□ 2.32
NKX6-1-201ENST00000295886 KIF21BO75037 1637 aa29.57■■■□□ 2.32
NKX6-1-201ENST00000295886 VPS8Q8N3P4 1428 aa29.44■■■□□ 2.3
NKX6-1-201ENST00000295886 NEUROD1Q13562 356 aa29.43■■■□□ 2.3
NKX6-1-201ENST00000295886 APLP2Q06481 763 aa29.41■■■□□ 2.3
NKX6-1-201ENST00000295886 ACIN1Q9UKV3 1341 aaKnown RBP29.38■■■□□ 2.29
NKX6-1-201ENST00000295886 TOP2BQ02880 1626 aa29.37■■■□□ 2.29
NKX6-1-201ENST00000295886 ZNF316A6NFI3 1004 aaPredicted RBP29.31■■■□□ 2.28
NKX6-1-201ENST00000295886 BIVM-ERCC5R4GMW8 1640 aa29.22■■■□□ 2.27
NKX6-1-201ENST00000295886 CUX1P39880 1505 aa29.16■■■□□ 2.26
NKX6-1-201ENST00000295886 NCAPD3P42695 1498 aa29.15■■■□□ 2.26
NKX6-1-201ENST00000295886 PRXQ9BXM0 1461 aa29.15■■■□□ 2.26
NKX6-1-201ENST00000295886 CENPBP07199 599 aaPredicted RBP29.14■■■□□ 2.26
NKX6-1-201ENST00000295886 GTF3C3Q9Y5Q9 886 aa29.13■■■□□ 2.25
NKX6-1-201ENST00000295886 KANK4Q5T7N3 995 aaPredicted RBP29.11■■■□□ 2.25
NKX6-1-201ENST00000295886 ARAP1Q96P48 1450 aa29.1■■■□□ 2.25
NKX6-1-201ENST00000295886 HMGXB3Q12766 1538 aa29.1■■■□□ 2.25
NKX6-1-201ENST00000295886 YTHDC1Q96MU7 727 aaKnown RBP29.09■■■□□ 2.25
NKX6-1-201ENST00000295886 ERICH3Q5RHP9 1530 aa29.07■■■□□ 2.24
NKX6-1-201ENST00000295886 KIF27Q86VH2 1401 aa29.02■■■□□ 2.24
NKX6-1-201ENST00000295886 MIER1Q8N108 512 aa29.01■■■□□ 2.23
NKX6-1-201ENST00000295886 CFTRP13569 1480 aa28.99■■■□□ 2.23
NKX6-1-201ENST00000295886 DHX57Q6P158 1386 aaKnown RBP28.86■■■□□ 2.21
NKX6-1-201ENST00000295886 ARHGAP35Q9NRY4 1499 aa28.84■■■□□ 2.21
NKX6-1-201ENST00000295886 ITGAEP38570 1179 aa28.84■■■□□ 2.21
NKX6-1-201ENST00000295886 CUX2O14529 1486 aa28.8■■■□□ 2.2
NKX6-1-201ENST00000295886 IGF1RP08069 1367 aa28.75■■■□□ 2.19
NKX6-1-201ENST00000295886 RRBP1Q9P2E9 1410 aaKnown RBP28.73■■■□□ 2.19
NKX6-1-201ENST00000295886 CCNB3Q8WWL7 1395 aa28.69■■■□□ 2.18
NKX6-1-201ENST00000295886 CADPSQ9ULU8 1353 aa28.69■■■□□ 2.18
NKX6-1-201ENST00000295886 CLSPNQ9HAW4 1339 aa28.66■■■□□ 2.18
NKX6-1-201ENST00000295886 FGD5Q6ZNL6 1462 aa28.64■■■□□ 2.18
NKX6-1-201ENST00000295886 CARMIL1Q5VZK9 1371 aa28.64■■■□□ 2.17
NKX6-1-201ENST00000295886 P3H3Q8IVL6 736 aa28.61■■■□□ 2.17
NKX6-1-201ENST00000295886 PRDM2Q13029 1718 aa28.59■■■□□ 2.17
NKX6-1-201ENST00000295886 MYT1Q01538 1121 aa28.56■■■□□ 2.16
NKX6-1-201ENST00000295886 ATP1B4Q9UN42 357 aaPredicted RBP28.54■■■□□ 2.16
NKX6-1-201ENST00000295886 RAB3GAP2Q9H2M9 1393 aa28.49■■■□□ 2.15
NKX6-1-201ENST00000295886 TIAM1Q13009 1591 aa28.48■■■□□ 2.15
NKX6-1-201ENST00000295886 CC2D2AQ9P2K1 1620 aa28.45■■■□□ 2.14
NKX6-1-201ENST00000295886 FAM50AQ14320 339 aaKnown RBP28.44■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms