Protein–RNA interactions for Protein: Q9H0D6

XRN2, 5'-3' exoribonuclease 2, humanhuman

Known RBP eCLIP

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRN2Q9H0D6 MRPL38-213ENST00000493104 1116 ntTSL 223.07■■□□□ 1.281e-6■■■■□ 24
XRN2Q9H0D6 HMGN1-212ENST00000479586 841 ntTSL 221.81■■□□□ 1.084e-10■■■■□ 24
XRN2Q9H0D6 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC21.81■■□□□ 1.084e-10■■■■□ 24
XRN2Q9H0D6 HMGN1-207ENST00000436324 1045 ntTSL 221.75■■□□□ 1.074e-10■■■■□ 24
XRN2Q9H0D6 HMGN1-219ENST00000491183 527 ntTSL 221.58■■□□□ 1.054e-10■■■■□ 24
XRN2Q9H0D6 HMGN1-209ENST00000463631 583 ntTSL 321.32■■□□□ 14e-10■■■■□ 24
XRN2Q9H0D6 HMGN1-210ENST00000464078 508 ntTSL 521.32■■□□□ 14e-10■■■■□ 24
XRN2Q9H0D6 ABHD18-205ENST00000513371 569 ntTSL 421.26■□□□□ 0.995e-11■■■■□ 24
XRN2Q9H0D6 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.975e-11■■■■□ 24
XRN2Q9H0D6 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.934e-10■■■■□ 24
XRN2Q9H0D6 MRPL38-209ENST00000477736 843 ntTSL 220.84■□□□□ 0.931e-6■■■■□ 24
XRN2Q9H0D6 GRINA-207ENST00000531992 597 ntTSL 220.77■□□□□ 0.925e-11■■■■□ 24
XRN2Q9H0D6 HMGN1-206ENST00000431390 1552 ntTSL 320.17■□□□□ 0.824e-10■■■■□ 24
XRN2Q9H0D6 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.785e-11■■■■□ 24
XRN2Q9H0D6 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.763e-6■■■■□ 24
XRN2Q9H0D6 ZFYVE21-205ENST00000554255 570 ntTSL 219.44■□□□□ 0.75e-11■■■■□ 24
XRN2Q9H0D6 HMGN1-214ENST00000482733 701 ntTSL 219.27■□□□□ 0.684e-10■■■■□ 24
XRN2Q9H0D6 RPL35-205ENST00000495728 649 ntTSL 219.12■□□□□ 0.655e-6■■■■□ 24
XRN2Q9H0D6 IDH3B-209ENST00000488299 1620 ntTSL 219.11■□□□□ 0.653e-6■■■■□ 24
XRN2Q9H0D6 CLOCK-208ENST00000509151 476 ntTSL 418.99■□□□□ 0.633e-6■■■■□ 24
XRN2Q9H0D6 GRINA-203ENST00000525513 796 ntTSL 518.87■□□□□ 0.615e-11■■■■□ 24
XRN2Q9H0D6 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.63e-6■■■■□ 24
XRN2Q9H0D6 GAPVD1-210ENST00000461379 582 ntTSL 418.46■□□□□ 0.555e-11■■■■□ 24
XRN2Q9H0D6 ZFYVE21-206ENST00000554630 566 ntTSL 218.19■□□□□ 0.55e-11■■■■□ 24
XRN2Q9H0D6 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.493e-6■■■■□ 24
XRN2Q9H0D6 ZFYVE21-210ENST00000556610 364 ntTSL 518.03■□□□□ 0.485e-11■■■■□ 24
XRN2Q9H0D6 HMGN1-208ENST00000443046 823 ntTSL 317.96■□□□□ 0.474e-10■■■■□ 24
XRN2Q9H0D6 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC17.89■□□□□ 0.455e-11■■■■□ 24
XRN2Q9H0D6 AC087289.3-201ENST00000590947 1886 ntAPPRIS ALT2 TSL 217.55■□□□□ 0.41e-6■■■■□ 24
XRN2Q9H0D6 ABHD18-204ENST00000473040 2139 ntTSL 517.36■□□□□ 0.375e-11■■■■□ 24
XRN2Q9H0D6 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.315e-11■■■■□ 24
XRN2Q9H0D6 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.285e-6■■■■□ 24
XRN2Q9H0D6 RPL35-206ENST00000629845 340 ntTSL 5 BASIC16.83■□□□□ 0.285e-6■■■■□ 24
XRN2Q9H0D6 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC16.79■□□□□ 0.283e-6■■■■□ 24
XRN2Q9H0D6 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.165e-11■■■■□ 24
XRN2Q9H0D6 CLUH-205ENST00000572014 555 ntTSL 216.01■□□□□ 0.155e-11■■■■□ 24
XRN2Q9H0D6 GAPVD1-214ENST00000469528 466 ntTSL 415.52■□□□□ 0.085e-11■■■■□ 24
XRN2Q9H0D6 RPL35-204ENST00000493018 692 ntTSL 314.92□□□□□ -0.025e-6■■■■□ 24
XRN2Q9H0D6 TRAF4-208ENST00000469529 788 ntTSL 213.98□□□□□ -0.173e-6■■■■□ 24
XRN2Q9H0D6 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.183e-6■■■■□ 24
XRN2Q9H0D6 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC13.69□□□□□ -0.225e-11■■■■□ 24
XRN2Q9H0D6 HMGN1-216ENST00000486741 4299 ntTSL 213.32□□□□□ -0.284e-10■■■■□ 24
XRN2Q9H0D6 IDH3B-211ENST00000492240 964 ntTSL 512.86□□□□□ -0.353e-6■■■■□ 24
XRN2Q9H0D6 GRINA-210ENST00000534791 1050 ntTSL 512.71□□□□□ -0.375e-11■■■■□ 24
XRN2Q9H0D6 TRAF4-206ENST00000454852 672 ntTSL 312.6□□□□□ -0.393e-6■■■■□ 24
XRN2Q9H0D6 HMGN1-220ENST00000492280 2707 ntTSL 512.39□□□□□ -0.434e-10■■■■□ 24
XRN2Q9H0D6 GAPVD1-220ENST00000497580 3720 ntTSL 212.07□□□□□ -0.485e-11■■■■□ 24
XRN2Q9H0D6 AC087289.3-202ENST00000593156 4270 ntTSL 211.61□□□□□ -0.551e-6■■■■□ 24
XRN2Q9H0D6 RPL35-202ENST00000373570 493 ntTSL 3 BASIC11.36□□□□□ -0.595e-6■■■■□ 24
XRN2Q9H0D6 GRINA-208ENST00000533044 564 ntTSL 311.28□□□□□ -0.65e-11■■■■□ 24
XRN2Q9H0D6 HMGN1-202ENST00000380747 709 ntTSL 3 BASIC10.78□□□□□ -0.684e-10■■■■□ 24
XRN2Q9H0D6 HMGN1-201ENST00000288344 1303 ntTSL 210.72□□□□□ -0.694e-10■■■■□ 24
XRN2Q9H0D6 POTEF-202ENST00000409914 3842 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.775e-6■■■■□ 24
XRN2Q9H0D6 GAPVD1-219ENST00000495955 5309 ntTSL 1 (best) BASIC10.24□□□□□ -0.775e-11■■■■□ 24
XRN2Q9H0D6 ZNF217-201ENST00000302342 5633 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.793e-6■■■■□ 24
XRN2Q9H0D6 ABHD18-201ENST00000388795 5450 ntTSL 5 BASIC9.61□□□□□ -0.875e-11■■■■□ 24
XRN2Q9H0D6 TET3-202ENST00000409262 11388 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.984e-6■■■■□ 24
XRN2Q9H0D6 GAPVD1-204ENST00000394083 4747 ntTSL 5 BASIC8.56□□□□□ -1.045e-11■■■■□ 24
XRN2Q9H0D6 HMGN1-205ENST00000419378 850 ntTSL 28.13□□□□□ -1.114e-10■■■■□ 24
XRN2Q9H0D6 GAPVD1-207ENST00000394105 5207 ntAPPRIS P3 TSL 5 BASIC7.48□□□□□ -1.215e-11■■■■□ 24
XRN2Q9H0D6 GAPVD1-212ENST00000467750 3163 ntTSL 57.27□□□□□ -1.255e-11■■■■□ 24
XRN2Q9H0D6 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC7.18□□□□□ -1.265e-11■■■■□ 24
XRN2Q9H0D6 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.275e-11■■■■□ 24
XRN2Q9H0D6 GAPVD1-218ENST00000495588 274 ntTSL 56.03□□□□□ -1.445e-11■■■■□ 24
XRN2Q9H0D6 CLOCK-206ENST00000506923 616 ntTSL 33.92□□□□□ -1.783e-6■■■■□ 24
XRN2Q9H0D6 ALDOA-215ENST00000565355 538 ntTSL 518.26■□□□□ 0.517e-16■■■■□ 24
XRN2Q9H0D6 ALDOA-217ENST00000566130 801 ntTSL 216.87■□□□□ 0.297e-16■■■■□ 24
XRN2Q9H0D6 RPTOR-209ENST00000575542 5536 ntTSL 1 (best)15.79■□□□□ 0.129e-7■■■■□ 24
XRN2Q9H0D6 DNM2-222ENST00000593220 561 ntTSL 317.57■□□□□ 0.46e-7■■■■□ 24
XRN2Q9H0D6 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.181e-6■■■■□ 24
XRN2Q9H0D6 RXRA-203ENST00000484822 5215 ntTSL 215□□□□□ -0.013e-6■■■■□ 24
XRN2Q9H0D6 POLR3E-216ENST00000567022 584 ntTSL 215.82■□□□□ 0.129e-7■■■■□ 24
XRN2Q9H0D6 SHC2-206ENST00000590222 951 ntTSL 520.18■□□□□ 0.822e-7■■■■□ 24
XRN2Q9H0D6 AFDN-209ENST00000400825 963 ntTSL 534.63■■■■□ 3.138e-9■■■■□ 23.9
XRN2Q9H0D6 AFDN-208ENST00000400824 875 ntTSL 532.42■■■□□ 2.788e-9■■■■□ 23.9
XRN2Q9H0D6 AGAP3-209ENST00000469901 582 ntTSL 323.9■■□□□ 1.423e-6■■■■□ 23.9
XRN2Q9H0D6 AGAP3-221ENST00000490097 604 ntTSL 417.11■□□□□ 0.332e-6■■■■□ 23.9
XRN2Q9H0D6 SHANK2-208ENST00000426687 460 ntTSL 511.48□□□□□ -0.573e-6■■■■□ 23.9
XRN2Q9H0D6 GTPBP2-201ENST00000307114 2830 ntTSL 2 BASIC11.98□□□□□ -0.494e-8■■■■□ 23.9
XRN2Q9H0D6 GTPBP2-208ENST00000476510 2816 ntTSL 511.59□□□□□ -0.554e-8■■■■□ 23.9
XRN2Q9H0D6 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC30.43■■■□□ 2.461e-6■■■■□ 23.9
XRN2Q9H0D6 FSCN1-203ENST00000444748 580 ntTSL 322.75■■□□□ 1.234e-8■■■■□ 23.9
XRN2Q9H0D6 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.274e-8■■■■□ 23.9
XRN2Q9H0D6 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC34.09■■■■□ 3.057e-10■■■■□ 23.9
XRN2Q9H0D6 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC16.53■□□□□ 0.242e-6■■■■□ 23.9
XRN2Q9H0D6 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.221e-6■■■■□ 23.9
XRN2Q9H0D6 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.231e-6■■■■□ 23.9
XRN2Q9H0D6 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.72■□□□□ 0.114e-7■■■■□ 23.9
XRN2Q9H0D6 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.064e-7■■■■□ 23.9
XRN2Q9H0D6 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC29.15■■■□□ 2.263e-7■■■■□ 23.9
XRN2Q9H0D6 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.333e-7■■■■□ 23.9
XRN2Q9H0D6 PTP4A3-205ENST00000523147 558 ntTSL 525.01■■□□□ 1.591e-6■■■■□ 23.9
XRN2Q9H0D6 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC24.71■■□□□ 1.551e-6■■■■□ 23.9
XRN2Q9H0D6 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC23.75■■□□□ 1.391e-6■■■■□ 23.9
XRN2Q9H0D6 ZFHX3-203ENST00000397992 13841 ntTSL 1 (best) BASIC9.12□□□□□ -0.952e-6■■■■□ 23.8
XRN2Q9H0D6 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC7.24□□□□□ -1.252e-6■■■■□ 23.8
XRN2Q9H0D6 SUN1-202ENST00000389574 3812 ntAPPRIS P3 TSL 2 BASIC10.24□□□□□ -0.772e-6■■■■□ 23.8
XRN2Q9H0D6 SUN1-219ENST00000452783 3717 ntTSL 2 BASIC9.2□□□□□ -0.942e-6■■■■□ 23.8
XRN2Q9H0D6 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.596e-7■■■■□ 23.8
XRN2Q9H0D6 IQSEC1-205ENST00000618604 3744 ntTSL 1 (best) BASIC10.56□□□□□ -0.726e-7■■■■□ 23.8
Retrieved 100 of 21,068 protein–RNA pairs in 143 ms