RNA–Protein interactions for RNA: ENST00000482733.1

HMGN1-214, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 701 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-214ENST00000482733 NISCHQ9Y2I1 1504 aa40.05■■■■■ 4
HMGN1-214ENST00000482733 CCDC180Q9P1Z9 1646 aa35.53■■■■□ 3.28
HMGN1-214ENST00000482733 ABCC9O60706 1549 aa34.71■■■■□ 3.15
HMGN1-214ENST00000482733 DCAF8L2P0C7V8 631 aa33.45■■■□□ 2.95
HMGN1-214ENST00000482733 NACADO15069 1562 aa33.45■■■□□ 2.95
HMGN1-214ENST00000482733 RB1CC1Q8TDY2 1594 aa33.45■■■□□ 2.95
HMGN1-214ENST00000482733 ZCCHC6Q5VYS8 1495 aaKnown RBP33.37■■■□□ 2.93
HMGN1-214ENST00000482733 MYO15BQ96JP2 1530 aa33.31■■■□□ 2.92
HMGN1-214ENST00000482733 DCAF1Q9Y4B6 1507 aa33.18■■■□□ 2.9
HMGN1-214ENST00000482733 UNC13AQ9UPW8 1703 aa32.53■■■□□ 2.8
HMGN1-214ENST00000482733 PABPN1Q86U42 306 aaKnown RBP eCLIP32.47■■■□□ 2.79
HMGN1-214ENST00000482733 SCRIBQ14160 1630 aa32.4■■■□□ 2.78
HMGN1-214ENST00000482733 BICRAQ9NZM4 1560 aa32.37■■■□□ 2.77
HMGN1-214ENST00000482733 SHROOM4Q9ULL8 1493 aa32.17■■■□□ 2.74
HMGN1-214ENST00000482733 DNAJC5BQ9UF47 199 aa31.77■■■□□ 2.68
HMGN1-214ENST00000482733 EIF4G1Q04637 1599 aaKnown RBP31.55■■■□□ 2.64
HMGN1-214ENST00000482733 CC2D2AQ9P2K1 1620 aa31.38■■■□□ 2.61
HMGN1-214ENST00000482733 CECR2Q9BXF3 1484 aa31.21■■■□□ 2.59
HMGN1-214ENST00000482733 BAZ1AQ9NRL2 1556 aaPredicted RBP31.05■■■□□ 2.56
HMGN1-214ENST00000482733 SMARCA4P51532 1647 aa31.02■■■□□ 2.56
HMGN1-214ENST00000482733 ATAD2BQ9ULI0 1458 aa30.89■■■□□ 2.53
HMGN1-214ENST00000482733 NCAPD3P42695 1498 aa30.88■■■□□ 2.53
HMGN1-214ENST00000482733 SMARCA2P51531 1590 aa30.86■■■□□ 2.53
HMGN1-214ENST00000482733 MROH2BQ7Z745 1585 aa30.83■■■□□ 2.53
HMGN1-214ENST00000482733 PEG3Q9GZU2 1588 aa30.75■■■□□ 2.51
HMGN1-214ENST00000482733 HMGXB3Q12766 1538 aa30.71■■■□□ 2.51
HMGN1-214ENST00000482733 BAZ1BQ9UIG0 1483 aaKnown RBP30.63■■■□□ 2.49
HMGN1-214ENST00000482733 RSF1Q96T23 1441 aaPredicted RBP30.56■■■□□ 2.48
HMGN1-214ENST00000482733 WIZO95785 1651 aa30.46■■■□□ 2.47
HMGN1-214ENST00000482733 TOP2AP11388 1531 aaKnown RBP30.21■■■□□ 2.43
HMGN1-214ENST00000482733 NESP48681 1621 aa30.03■■■□□ 2.4
HMGN1-214ENST00000482733 LAMC3Q9Y6N6 1575 aa30.02■■■□□ 2.4
HMGN1-214ENST00000482733 CADPSQ9ULU8 1353 aa30■■■□□ 2.39
HMGN1-214ENST00000482733 ERCC6Q03468 1493 aa29.95■■■□□ 2.39
HMGN1-214ENST00000482733 PDS5BQ9NTI5 1447 aa29.88■■■□□ 2.37
HMGN1-214ENST00000482733 CCDC88BA6NC98 1476 aa29.86■■■□□ 2.37
HMGN1-214ENST00000482733 SUPT5HO00267 1087 aaKnown RBP29.83■■■□□ 2.37
HMGN1-214ENST00000482733 CFTRP13569 1480 aa29.81■■■□□ 2.36
HMGN1-214ENST00000482733 CUX2O14529 1486 aa29.62■■■□□ 2.33
HMGN1-214ENST00000482733 KIF21AQ7Z4S6 1674 aa29.62■■■□□ 2.33
HMGN1-214ENST00000482733 FANCD2Q9BXW9 1451 aa29.61■■■□□ 2.33
HMGN1-214ENST00000482733 CEP164Q9UPV0 1460 aa29.58■■■□□ 2.33
HMGN1-214ENST00000482733 THOC2Q8NI27 1593 aaKnown RBP29.55■■■□□ 2.32
HMGN1-214ENST00000482733 MRC2Q9UBG0 1479 aa29.52■■■□□ 2.32
HMGN1-214ENST00000482733 PRDM2Q13029 1718 aa29.45■■■□□ 2.31
HMGN1-214ENST00000482733 WDR62O43379 1518 aa29.4■■■□□ 2.3
HMGN1-214ENST00000482733 URB2Q14146 1524 aaKnown RBP29.28■■■□□ 2.28
HMGN1-214ENST00000482733 ABCC8Q09428 1581 aa29.21■■■□□ 2.27
HMGN1-214ENST00000482733 TOPBP1Q92547 1522 aa29.14■■■□□ 2.25
HMGN1-214ENST00000482733 DNMBPQ6XZF7 1577 aa29.11■■■□□ 2.25
HMGN1-214ENST00000482733 IFT140Q96RY7 1462 aa28.97■■■□□ 2.23
HMGN1-214ENST00000482733 CUX1P39880 1505 aa28.92■■■□□ 2.22
HMGN1-214ENST00000482733 POLA1P09884 1462 aaPredicted RBP28.9■■■□□ 2.22
HMGN1-214ENST00000482733 FGD5Q6ZNL6 1462 aa28.83■■■□□ 2.21
HMGN1-214ENST00000482733 WRNQ14191 1432 aaPredicted RBP eCLIP28.82■■■□□ 2.2
HMGN1-214ENST00000482733 SOGA1O94964 1423 aa28.81■■■□□ 2.2
HMGN1-214ENST00000482733 TARBP1Q13395 1621 aaKnown RBP28.77■■■□□ 2.2
HMGN1-214ENST00000482733 ZNF608Q9ULD9 1512 aaPredicted RBP28.77■■■□□ 2.2
HMGN1-214ENST00000482733 RAD54L2Q9Y4B4 1467 aa28.75■■■□□ 2.19
HMGN1-214ENST00000482733 TOP2BQ02880 1626 aa28.7■■■□□ 2.19
HMGN1-214ENST00000482733 BIVM-ERCC5R4GMW8 1640 aa28.67■■■□□ 2.18
HMGN1-214ENST00000482733 SYNJ1O43426 1573 aa28.67■■■□□ 2.18
HMGN1-214ENST00000482733 AQRO60306 1485 aaKnown RBP eCLIP28.65■■■□□ 2.185e-16■■■■■ 28.5
HMGN1-214ENST00000482733 EIF4G3O43432 1585 aaKnown RBP28.64■■■□□ 2.18
HMGN1-214ENST00000482733 DNAJC5Q9H3Z4 198 aa28.63■■■□□ 2.17
HMGN1-214ENST00000482733 WDR97A6NE52 1622 aa28.62■■■□□ 2.17
HMGN1-214ENST00000482733 TDRD9Q8NDG6 1382 aaKnown RBP28.62■■■□□ 2.17
HMGN1-214ENST00000482733 ABCA10Q8WWZ4 1543 aa28.59■■■□□ 2.17
HMGN1-214ENST00000482733 GAPVD1Q14C86 1478 aa28.47■■■□□ 2.15
HMGN1-214ENST00000482733 GRIN2BQ13224 1484 aa28.46■■■□□ 2.15
HMGN1-214ENST00000482733 OSCARQ8IYS5 282 aa28.44■■■□□ 2.14
HMGN1-214ENST00000482733 ABCA5Q8WWZ7 1642 aa28.4■■■□□ 2.14
HMGN1-214ENST00000482733 SNAPC4Q5SXM2 1469 aa28.39■■■□□ 2.13
HMGN1-214ENST00000482733 MAGI1Q96QZ7 1491 aaPredicted RBP28.39■■■□□ 2.13
HMGN1-214ENST00000482733 FBLN2P98095 1184 aa28.32■■■□□ 2.12
HMGN1-214ENST00000482733 PBRM1Q86U86 1689 aa28.3■■■□□ 2.12
HMGN1-214ENST00000482733 CHMP7Q8WUX9 453 aaPredicted RBP28.29■■■□□ 2.12
HMGN1-214ENST00000482733 SYNJ2O15056 1496 aa28.27■■■□□ 2.12
HMGN1-214ENST00000482733 ERICH3Q5RHP9 1530 aa28.24■■■□□ 2.11
HMGN1-214ENST00000482733 KIF27Q86VH2 1401 aa28.24■■■□□ 2.11
HMGN1-214ENST00000482733 TRIM41Q8WV44 630 aa28.23■■■□□ 2.11
HMGN1-214ENST00000482733 CHD1O14646 1710 aa28.21■■■□□ 2.11
HMGN1-214ENST00000482733 FHAD1B1AJZ9 1412 aa28.17■■■□□ 2.1
HMGN1-214ENST00000482733 ADAMTS12P58397 1594 aa28.14■■■□□ 2.1
HMGN1-214ENST00000482733 IGF1RP08069 1367 aa28.1■■■□□ 2.09
HMGN1-214ENST00000482733 GRIN2AQ12879 1464 aa28.08■■■□□ 2.09
HMGN1-214ENST00000482733 CLASP1Q7Z460 1538 aa27.99■■■□□ 2.07
HMGN1-214ENST00000482733 NUP160Q12769 1436 aa27.97■■■□□ 2.07
HMGN1-214ENST00000482733 CUL7Q14999 1698 aa27.97■■■□□ 2.07
HMGN1-214ENST00000482733 CARMIL1Q5VZK9 1371 aa27.94■■■□□ 2.06
HMGN1-214ENST00000482733 ARHGEF11O15085 1522 aa27.91■■■□□ 2.06
HMGN1-214ENST00000482733 RUSC2Q8N2Y8 1516 aa27.91■■■□□ 2.06
HMGN1-214ENST00000482733 CHIC1Q5VXU3 224 aa27.9■■■□□ 2.06
HMGN1-214ENST00000482733 CEP170Q5SW79 1584 aa27.89■■■□□ 2.05
HMGN1-214ENST00000482733 RIMBP3CA6NJZ7 1639 aa27.85■■■□□ 2.05
HMGN1-214ENST00000482733 RIMBP3BA6NNM3 1639 aa27.85■■■□□ 2.05
HMGN1-214ENST00000482733 RIMBP3Q9UFD9 1639 aa27.85■■■□□ 2.05
HMGN1-214ENST00000482733 RAPGEF2Q9Y4G8 1499 aa27.77■■■□□ 2.04
HMGN1-214ENST00000482733 EEA1Q15075 1411 aa27.77■■■□□ 2.04
HMGN1-214ENST00000482733 KIAA0586Q9BVV6 1533 aa27.73■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms