RNA–Protein interactions for RNA: ENST00000436324.5

HMGN1-207, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,045 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-207ENST00000436324 NISCHQ9Y2I1 1504 aa44.87■■■■■ 4.77
HMGN1-207ENST00000436324 CCDC180Q9P1Z9 1646 aa39.93■■■■□ 3.98
HMGN1-207ENST00000436324 ABCC9O60706 1549 aa39.61■■■■□ 3.93
HMGN1-207ENST00000436324 DCAF8L2P0C7V8 631 aa37.88■■■■□ 3.65
HMGN1-207ENST00000436324 RB1CC1Q8TDY2 1594 aa37.83■■■■□ 3.65
HMGN1-207ENST00000436324 NACADO15069 1562 aa37.68■■■■□ 3.62
HMGN1-207ENST00000436324 ZCCHC6Q5VYS8 1495 aaKnown RBP37.28■■■■□ 3.56
HMGN1-207ENST00000436324 MYO15BQ96JP2 1530 aa37.27■■■■□ 3.56
HMGN1-207ENST00000436324 PABPN1Q86U42 306 aaKnown RBP eCLIP37.04■■■■□ 3.52
HMGN1-207ENST00000436324 DCAF1Q9Y4B6 1507 aa37.01■■■■□ 3.52
HMGN1-207ENST00000436324 UNC13AQ9UPW8 1703 aa36.91■■■■□ 3.5
HMGN1-207ENST00000436324 DNAJC5BQ9UF47 199 aa36.72■■■■□ 3.47
HMGN1-207ENST00000436324 BICRAQ9NZM4 1560 aa36.7■■■■□ 3.47
HMGN1-207ENST00000436324 SCRIBQ14160 1630 aa36.56■■■■□ 3.44
HMGN1-207ENST00000436324 SHROOM4Q9ULL8 1493 aa36.17■■■■□ 3.38
HMGN1-207ENST00000436324 EIF4G1Q04637 1599 aaKnown RBP35.77■■■■□ 3.32
HMGN1-207ENST00000436324 CC2D2AQ9P2K1 1620 aa35.73■■■■□ 3.31
HMGN1-207ENST00000436324 CECR2Q9BXF3 1484 aa35.59■■■■□ 3.29
HMGN1-207ENST00000436324 SMARCA4P51532 1647 aa34.87■■■■□ 3.17
HMGN1-207ENST00000436324 NCAPD3P42695 1498 aa34.81■■■■□ 3.16
HMGN1-207ENST00000436324 ATAD2BQ9ULI0 1458 aa34.81■■■■□ 3.16
HMGN1-207ENST00000436324 BAZ1AQ9NRL2 1556 aaPredicted RBP34.77■■■■□ 3.16
HMGN1-207ENST00000436324 SMARCA2P51531 1590 aa34.7■■■■□ 3.14
HMGN1-207ENST00000436324 MROH2BQ7Z745 1585 aa34.62■■■■□ 3.13
HMGN1-207ENST00000436324 HMGXB3Q12766 1538 aa34.55■■■■□ 3.12
HMGN1-207ENST00000436324 BAZ1BQ9UIG0 1483 aaKnown RBP34.51■■■■□ 3.11
HMGN1-207ENST00000436324 PEG3Q9GZU2 1588 aa34.46■■■■□ 3.11
HMGN1-207ENST00000436324 WIZO95785 1651 aa34.22■■■■□ 3.07
HMGN1-207ENST00000436324 NESP48681 1621 aa34.17■■■■□ 3.06
HMGN1-207ENST00000436324 ERCC6Q03468 1493 aa34.15■■■■□ 3.06
HMGN1-207ENST00000436324 RSF1Q96T23 1441 aaPredicted RBP34.1■■■■□ 3.05
HMGN1-207ENST00000436324 LAMC3Q9Y6N6 1575 aa33.9■■■■□ 3.02
HMGN1-207ENST00000436324 CADPSQ9ULU8 1353 aa33.83■■■■□ 3.01
HMGN1-207ENST00000436324 CUX2O14529 1486 aa33.82■■■■□ 3.01
HMGN1-207ENST00000436324 TOP2AP11388 1531 aaKnown RBP33.79■■■■□ 3
HMGN1-207ENST00000436324 PDS5BQ9NTI5 1447 aa33.76■■■□□ 2.99
HMGN1-207ENST00000436324 KIF21AQ7Z4S6 1674 aa33.66■■■□□ 2.98
HMGN1-207ENST00000436324 THOC2Q8NI27 1593 aaKnown RBP33.61■■■□□ 2.97
HMGN1-207ENST00000436324 CFTRP13569 1480 aa33.51■■■□□ 2.96
HMGN1-207ENST00000436324 CCDC88BA6NC98 1476 aa33.46■■■□□ 2.95
HMGN1-207ENST00000436324 FANCD2Q9BXW9 1451 aa33.44■■■□□ 2.94
HMGN1-207ENST00000436324 MRC2Q9UBG0 1479 aa33.44■■■□□ 2.94
HMGN1-207ENST00000436324 CEP164Q9UPV0 1460 aa33.41■■■□□ 2.94
HMGN1-207ENST00000436324 WDR62O43379 1518 aa33.28■■■□□ 2.92
HMGN1-207ENST00000436324 DNAJC5Q9H3Z4 198 aa33.28■■■□□ 2.92
HMGN1-207ENST00000436324 SUPT5HO00267 1087 aaKnown RBP33.15■■■□□ 2.9
HMGN1-207ENST00000436324 URB2Q14146 1524 aaKnown RBP33.12■■■□□ 2.89
HMGN1-207ENST00000436324 PRDM2Q13029 1718 aa33.11■■■□□ 2.89
HMGN1-207ENST00000436324 TOPBP1Q92547 1522 aa32.85■■■□□ 2.85
HMGN1-207ENST00000436324 ABCC8Q09428 1581 aa32.77■■■□□ 2.84
HMGN1-207ENST00000436324 DNMBPQ6XZF7 1577 aa32.75■■■□□ 2.83
HMGN1-207ENST00000436324 IFT140Q96RY7 1462 aa32.71■■■□□ 2.83
HMGN1-207ENST00000436324 ZNF608Q9ULD9 1512 aaPredicted RBP32.65■■■□□ 2.82
HMGN1-207ENST00000436324 POLA1P09884 1462 aaPredicted RBP32.55■■■□□ 2.8
HMGN1-207ENST00000436324 CUX1P39880 1505 aa32.49■■■□□ 2.79
HMGN1-207ENST00000436324 RAD54L2Q9Y4B4 1467 aa32.48■■■□□ 2.79
HMGN1-207ENST00000436324 OSCARQ8IYS5 282 aa32.47■■■□□ 2.79
HMGN1-207ENST00000436324 TARBP1Q13395 1621 aaKnown RBP32.47■■■□□ 2.79
HMGN1-207ENST00000436324 SOGA1O94964 1423 aa32.46■■■□□ 2.79
HMGN1-207ENST00000436324 AQRO60306 1485 aaKnown RBP eCLIP32.45■■■□□ 2.792e-11■■■■■ 27.4
HMGN1-207ENST00000436324 FGD5Q6ZNL6 1462 aa32.44■■■□□ 2.78
HMGN1-207ENST00000436324 EIF4G3O43432 1585 aaKnown RBP32.43■■■□□ 2.78
HMGN1-207ENST00000436324 TDRD9Q8NDG6 1382 aaKnown RBP32.36■■■□□ 2.77
HMGN1-207ENST00000436324 FBLN2P98095 1184 aa32.22■■■□□ 2.75
HMGN1-207ENST00000436324 TRIM41Q8WV44 630 aa32.17■■■□□ 2.74
HMGN1-207ENST00000436324 WRNQ14191 1432 aaPredicted RBP eCLIP32.17■■■□□ 2.74
HMGN1-207ENST00000436324 WDR97A6NE52 1622 aa32.11■■■□□ 2.73
HMGN1-207ENST00000436324 SNAPC4Q5SXM2 1469 aa32.1■■■□□ 2.73
HMGN1-207ENST00000436324 SYNJ1O43426 1573 aa32.08■■■□□ 2.73
HMGN1-207ENST00000436324 CHD1O14646 1710 aa32.08■■■□□ 2.73
HMGN1-207ENST00000436324 GRIN2BQ13224 1484 aa32.07■■■□□ 2.72
HMGN1-207ENST00000436324 ABCA10Q8WWZ4 1543 aa32.06■■■□□ 2.72
HMGN1-207ENST00000436324 TOP2BQ02880 1626 aa32.06■■■□□ 2.72
HMGN1-207ENST00000436324 GAPVD1Q14C86 1478 aa32.04■■■□□ 2.72
HMGN1-207ENST00000436324 BIVM-ERCC5R4GMW8 1640 aa32.04■■■□□ 2.72
HMGN1-207ENST00000436324 CHMP7Q8WUX9 453 aaPredicted RBP32.02■■■□□ 2.72
HMGN1-207ENST00000436324 MAGI1Q96QZ7 1491 aaPredicted RBP31.98■■■□□ 2.71
HMGN1-207ENST00000436324 ABCA5Q8WWZ7 1642 aa31.93■■■□□ 2.7
HMGN1-207ENST00000436324 PBRM1Q86U86 1689 aa31.92■■■□□ 2.7
HMGN1-207ENST00000436324 RIMBP3CA6NJZ7 1639 aa31.91■■■□□ 2.7
HMGN1-207ENST00000436324 RIMBP3BA6NNM3 1639 aa31.91■■■□□ 2.7
HMGN1-207ENST00000436324 RIMBP3Q9UFD9 1639 aa31.91■■■□□ 2.7
HMGN1-207ENST00000436324 SYNJ2O15056 1496 aa31.89■■■□□ 2.7
HMGN1-207ENST00000436324 ARHGEF11O15085 1522 aa31.88■■■□□ 2.69
HMGN1-207ENST00000436324 CYB5RLQ6IPT4 315 aa31.73■■■□□ 2.67
HMGN1-207ENST00000436324 CLASP1Q7Z460 1538 aa31.73■■■□□ 2.67
HMGN1-207ENST00000436324 ADAMTS12P58397 1594 aa31.68■■■□□ 2.66
HMGN1-207ENST00000436324 GRIN2AQ12879 1464 aa31.65■■■□□ 2.66
HMGN1-207ENST00000436324 ERICH3Q5RHP9 1530 aa31.65■■■□□ 2.66
HMGN1-207ENST00000436324 FHAD1B1AJZ9 1412 aa31.65■■■□□ 2.66
HMGN1-207ENST00000436324 ARAP1Q96P48 1450 aa31.62■■■□□ 2.65
HMGN1-207ENST00000436324 NUP160Q12769 1436 aa31.51■■■□□ 2.64
HMGN1-207ENST00000436324 KIF27Q86VH2 1401 aa31.51■■■□□ 2.64
HMGN1-207ENST00000436324 CEP170Q5SW79 1584 aa31.51■■■□□ 2.63
HMGN1-207ENST00000436324 IGF1RP08069 1367 aa31.46■■■□□ 2.63
HMGN1-207ENST00000436324 ERCC6L2Q5T890 1561 aa31.34■■■□□ 2.61
HMGN1-207ENST00000436324 JPH4Q96JJ6 628 aa31.28■■■□□ 2.6
HMGN1-207ENST00000436324 CARMIL1Q5VZK9 1371 aa31.28■■■□□ 2.6
HMGN1-207ENST00000436324 CUL7Q14999 1698 aa31.27■■■□□ 2.6
HMGN1-207ENST00000436324 SHROOM2Q13796 1616 aa31.26■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms