RNA–Protein interactions for RNA: ENST00000484822.1

RXRA-203, Transcript of retinoid X receptor alpha, humanhuman

TSL 2

Gene RXRA, Length 5,215 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RXRA-203ENST00000484822 NISCHQ9Y2I1 1504 aa26.36■■□□□ 1.81
RXRA-203ENST00000484822 DCAF8L2P0C7V8 631 aa25.94■■□□□ 1.74
RXRA-203ENST00000484822 SUPT5HO00267 1087 aaKnown RBP24.57■■□□□ 1.52
RXRA-203ENST00000484822 SHROOM4Q9ULL8 1493 aa24.32■■□□□ 1.48
RXRA-203ENST00000484822 PELP1Q8IZL8 1130 aaKnown RBP24.19■■□□□ 1.46
RXRA-203ENST00000484822 EHMT2Q96KQ7 1210 aa23.98■■□□□ 1.43
RXRA-203ENST00000484822 PCGF6Q9BYE7 350 aa23.69■■□□□ 1.38
RXRA-203ENST00000484822 FAM9AQ8IZU1 332 aaPredicted RBP23.61■■□□□ 1.37
RXRA-203ENST00000484822 CENPBP07199 599 aaPredicted RBP23.43■■□□□ 1.34
RXRA-203ENST00000484822 ERICH6Q7L0X2 663 aa23.34■■□□□ 1.33
RXRA-203ENST00000484822 TTBK1Q5TCY1 1321 aaPredicted RBP23.28■■□□□ 1.32
RXRA-203ENST00000484822 MYT1Q01538 1121 aa23.26■■□□□ 1.31
RXRA-203ENST00000484822 APLP2Q06481 763 aa23.26■■□□□ 1.31
RXRA-203ENST00000484822 ZEB1P37275 1124 aaPredicted RBP23.13■■□□□ 1.29
RXRA-203ENST00000484822 CCER1Q8TC90 406 aaPredicted RBP23.06■■□□□ 1.28
RXRA-203ENST00000484822 YTHDC1Q96MU7 727 aaKnown RBP22.96■■□□□ 1.27
RXRA-203ENST00000484822 TRIM41Q8WV44 630 aa22.81■■□□□ 1.24
RXRA-203ENST00000484822 NEFLP07196 543 aa22.75■■□□□ 1.23
RXRA-203ENST00000484822 RANGAP1P46060 587 aaPredicted RBP22.65■■□□□ 1.22
RXRA-203ENST00000484822 HRCP23327 699 aa22.62■■□□□ 1.21
RXRA-203ENST00000484822 ABCC9O60706 1549 aa22.6■■□□□ 1.21
RXRA-203ENST00000484822 PPARGC1BQ86YN6 1023 aaKnown RBP22.46■■□□□ 1.19
RXRA-203ENST00000484822 UBTFP17480 764 aaKnown RBP22.4■■□□□ 1.18
RXRA-203ENST00000484822 TRIM26Q12899 539 aaPredicted RBP22.38■■□□□ 1.17
RXRA-203ENST00000484822 ATP1B4Q9UN42 357 aaPredicted RBP22.3■■□□□ 1.16
RXRA-203ENST00000484822 PABPN1Q86U42 306 aaKnown RBP eCLIP22.17■■□□□ 1.14
RXRA-203ENST00000484822 DAXXQ9UER7 740 aaPredicted RBP22.08■■□□□ 1.13
RXRA-203ENST00000484822 CHIC1Q5VXU3 224 aa22.04■■□□□ 1.12
RXRA-203ENST00000484822 LOC105371045A0A1W2PR82 267 aa22.01■■□□□ 1.11
RXRA-203ENST00000484822 CCDC180Q9P1Z9 1646 aa21.97■■□□□ 1.11
RXRA-203ENST00000484822 DIEXFQ68CQ4 756 aaKnown RBP21.91■■□□□ 1.1
RXRA-203ENST00000484822 RTL5Q5HYW3 569 aaPredicted RBP21.86■■□□□ 1.09
RXRA-203ENST00000484822 ZCCHC6Q5VYS8 1495 aaKnown RBP21.86■■□□□ 1.09
RXRA-203ENST00000484822 MYT1LQ9UL68 1186 aa21.86■■□□□ 1.09
RXRA-203ENST00000484822 ITGAEP38570 1179 aa21.85■■□□□ 1.09
RXRA-203ENST00000484822 GTF3C3Q9Y5Q9 886 aa21.84■■□□□ 1.09
RXRA-203ENST00000484822 HNRNPUL2Q1KMD3 747 aaKnown RBP21.83■■□□□ 1.09
RXRA-203ENST00000484822 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.82■■□□□ 1.08
RXRA-203ENST00000484822 POLR3GLQ9BT43 218 aa21.82■■□□□ 1.08
RXRA-203ENST00000484822 CNGB1Q14028 1251 aaPredicted RBP21.79■■□□□ 1.08
RXRA-203ENST00000484822 BCANQ96GW7 911 aa21.68■■□□□ 1.06
RXRA-203ENST00000484822 SCRIBQ14160 1630 aa21.62■■□□□ 1.05
RXRA-203ENST00000484822 ZNF316A6NFI3 1004 aaPredicted RBP21.6■■□□□ 1.05
RXRA-203ENST00000484822 CLSPNQ9HAW4 1339 aa21.49■■□□□ 1.03
RXRA-203ENST00000484822 ACIN1Q9UKV3 1341 aaKnown RBP21.44■■□□□ 1.02
RXRA-203ENST00000484822 RB1CC1Q8TDY2 1594 aa21.42■■□□□ 1.02
RXRA-203ENST00000484822 CDK11AQ9UQ88 783 aaPredicted RBP21.36■■□□□ 1.01
RXRA-203ENST00000484822 NACADO15069 1562 aa21.28■■□□□ 1
RXRA-203ENST00000484822 NEUROD1Q13562 356 aa21.19■□□□□ 0.98
RXRA-203ENST00000484822 CSRNP3Q8WYN3 585 aa21.19■□□□□ 0.98
RXRA-203ENST00000484822 FBLN2P98095 1184 aa21.17■□□□□ 0.98
RXRA-203ENST00000484822 ANP32CO43423 234 aa21.16■□□□□ 0.98
RXRA-203ENST00000484822 EIF5BO60841 1220 aaKnown RBP21.15■□□□□ 0.98
RXRA-203ENST00000484822 SLC4A1APQ9BWU0 796 aaKnown RBP21.14■□□□□ 0.97
RXRA-203ENST00000484822 FAM50AQ14320 339 aaKnown RBP21.1■□□□□ 0.97
RXRA-203ENST00000484822 DCAF1Q9Y4B6 1507 aa21.05■□□□□ 0.96
RXRA-203ENST00000484822 ANP32AP39687 249 aaKnown RBP21.02■□□□□ 0.96
RXRA-203ENST00000484822 TRIM52Q96A61 297 aa20.99■□□□□ 0.95
RXRA-203ENST00000484822 NPM2Q86SE8 214 aaKnown RBP20.97■□□□□ 0.95
RXRA-203ENST00000484822 FKBP8Q14318 412 aa20.95■□□□□ 0.94
RXRA-203ENST00000484822 SCAF1Q9H7N4 1312 aaKnown RBP20.93■□□□□ 0.94
RXRA-203ENST00000484822 RSF1Q96T23 1441 aaPredicted RBP20.92■□□□□ 0.94
RXRA-203ENST00000484822 ZNF326Q5BKZ1 582 aaKnown RBP20.89■□□□□ 0.93
RXRA-203ENST00000484822 P3H3Q8IVL6 736 aa20.89■□□□□ 0.93
RXRA-203ENST00000484822 BCL11AQ9H165 835 aa20.83■□□□□ 0.92
RXRA-203ENST00000484822 BAZ1BQ9UIG0 1483 aaKnown RBP20.79■□□□□ 0.92
RXRA-203ENST00000484822 NBR1Q14596 966 aa20.77■□□□□ 0.92
RXRA-203ENST00000484822 ESF1Q9H501 851 aaKnown RBP20.77■□□□□ 0.92
RXRA-203ENST00000484822 ZBTB47Q9UFB7 747 aaPredicted RBP20.77■□□□□ 0.91
RXRA-203ENST00000484822 CANXP27824 592 aaKnown RBP20.76■□□□□ 0.91
RXRA-203ENST00000484822 NPM1P06748 294 aaKnown RBP eCLIP20.76■□□□□ 0.91
RXRA-203ENST00000484822 BAZ1AQ9NRL2 1556 aaPredicted RBP20.74■□□□□ 0.91
RXRA-203ENST00000484822 ARID3CA6NKF2 412 aa20.71■□□□□ 0.91
RXRA-203ENST00000484822 GLIPR1L2Q4G1C9 344 aa20.71■□□□□ 0.91
RXRA-203ENST00000484822 HNRNPUQ00839 825 aaKnown RBP eCLIP20.65■□□□□ 0.9
RXRA-203ENST00000484822 EEA1Q15075 1411 aa20.61■□□□□ 0.89
RXRA-203ENST00000484822 ANP32BQ92688 251 aaKnown RBP20.59■□□□□ 0.89
RXRA-203ENST00000484822 ZNF777Q9ULD5 760 aaPredicted RBP20.58■□□□□ 0.89
RXRA-203ENST00000484822 DDX10Q13206 875 aaKnown RBP20.58■□□□□ 0.88
RXRA-203ENST00000484822 WRNQ14191 1432 aaPredicted RBP eCLIP20.58■□□□□ 0.889e-6■■■■■ 50.1
RXRA-203ENST00000484822 CECR2Q9BXF3 1484 aa20.57■□□□□ 0.88
RXRA-203ENST00000484822 CHMP7Q8WUX9 453 aaPredicted RBP20.56■□□□□ 0.88
RXRA-203ENST00000484822 MYO15BQ96JP2 1530 aa20.56■□□□□ 0.88
RXRA-203ENST00000484822 ARXQ96QS3 562 aa20.54■□□□□ 0.88
RXRA-203ENST00000484822 FAM9BQ8IZU0 186 aa20.52■□□□□ 0.88
RXRA-203ENST00000484822 MIER1Q8N108 512 aa20.51■□□□□ 0.87
RXRA-203ENST00000484822 HSP90AA1P07900 732 aaKnown RBP20.5■□□□□ 0.87
RXRA-203ENST00000484822 CCDC136Q96JN2 1154 aa20.5■□□□□ 0.87
RXRA-203ENST00000484822 IRX6P78412 446 aaPredicted RBP20.47■□□□□ 0.87
RXRA-203ENST00000484822 ANP32EQ9BTT0 268 aa20.45■□□□□ 0.86
RXRA-203ENST00000484822 CLIP1P30622 1438 aa20.45■□□□□ 0.86
RXRA-203ENST00000484822 NEFMP07197 916 aa20.44■□□□□ 0.86
RXRA-203ENST00000484822 SALL2Q9Y467 1007 aaPredicted RBP20.44■□□□□ 0.86
RXRA-203ENST00000484822 KIF27Q86VH2 1401 aa20.43■□□□□ 0.86
RXRA-203ENST00000484822 GOLGA3Q08378 1498 aa20.42■□□□□ 0.86
RXRA-203ENST00000484822 SLC24A1O60721 1099 aa20.42■□□□□ 0.86
RXRA-203ENST00000484822 UPF2Q9HAU5 1272 aaKnown RBP20.42■□□□□ 0.86
RXRA-203ENST00000484822 STAG3Q9UJ98 1225 aa20.38■□□□□ 0.85
RXRA-203ENST00000484822 MTUS2Q5JR59 1369 aa20.37■□□□□ 0.85
RXRA-203ENST00000484822 SMARCA2P51531 1590 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms