RNA–Protein interactions for RNA: ENST00000419378.5

HMGN1-205, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 850 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-205ENST00000419378 AEBP2Q6ZN18 517 aaPredicted RBP23.07■■□□□ 1.28
HMGN1-205ENST00000419378 CHIC1Q5VXU3 224 aa22.87■■□□□ 1.25
HMGN1-205ENST00000419378 PHF23Q9BUL5 403 aaPredicted RBP20.18■□□□□ 0.82
HMGN1-205ENST00000419378 SENP3Q9H4L4 574 aaPredicted RBP19.47■□□□□ 0.71
HMGN1-205ENST00000419378 PLPPR3Q6T4P5 718 aa18.73■□□□□ 0.59
HMGN1-205ENST00000419378 FOXD1Q16676 465 aa18.06■□□□□ 0.48
HMGN1-205ENST00000419378 ADRA2BP18089 450 aa17.71■□□□□ 0.43
HMGN1-205ENST00000419378 PPP6R1Q9UPN7 881 aa17.7■□□□□ 0.42
HMGN1-205ENST00000419378 PIAS4Q8N2W9 510 aaPredicted RBP17.12■□□□□ 0.33
HMGN1-205ENST00000419378 NISCHQ9Y2I1 1504 aa16.93■□□□□ 0.3
HMGN1-205ENST00000419378 KCNA4P22459 653 aa16.64■□□□□ 0.25
HMGN1-205ENST00000419378 PPP4R3CPQ6ZMV5 832 aa16.57■□□□□ 0.24
HMGN1-205ENST00000419378 MSH5O43196 834 aa16.47■□□□□ 0.23
HMGN1-205ENST00000419378 NCBP3Q53F19 620 aaKnown RBP16.22■□□□□ 0.19
HMGN1-205ENST00000419378 POTEDQ86YR6 584 aa16.19■□□□□ 0.18
HMGN1-205ENST00000419378 SCAF1Q9H7N4 1312 aaKnown RBP16.14■□□□□ 0.17
HMGN1-205ENST00000419378 NPM3O75607 178 aaKnown RBP16.01■□□□□ 0.15
HMGN1-205ENST00000419378 CNKSR2Q8WXI2 1034 aa16■□□□□ 0.15
HMGN1-205ENST00000419378 MAPK8IP2Q13387 824 aaPredicted RBP15.96■□□□□ 0.15
HMGN1-205ENST00000419378 EHMT2Q96KQ7 1210 aa15.92■□□□□ 0.14
HMGN1-205ENST00000419378 SLC4A1APQ9BWU0 796 aaKnown RBP15.9■□□□□ 0.14
HMGN1-205ENST00000419378 DMRT2Q9Y5R5 561 aa15.61■□□□□ 0.09
HMGN1-205ENST00000419378 RNF216Q9NWF9 866 aaPredicted RBP15.59■□□□□ 0.09
HMGN1-205ENST00000419378 CSRNP3Q8WYN3 585 aa15.54■□□□□ 0.08
HMGN1-205ENST00000419378 HOXD11P31277 338 aaPredicted RBP15.43■□□□□ 0.06
HMGN1-205ENST00000419378 DNAJC5BQ9UF47 199 aa15.43■□□□□ 0.06
HMGN1-205ENST00000419378 ZBTB22O15209 634 aa15.32■□□□□ 0.04
HMGN1-205ENST00000419378 FOXD4L1Q9NU39 408 aa15.18■□□□□ 0.02
HMGN1-205ENST00000419378 CCDC180Q9P1Z9 1646 aa15.1■□□□□ 0.01
HMGN1-205ENST00000419378 SLC4A2P04920 1241 aa15.04■□□□□ -0
HMGN1-205ENST00000419378 DCAF8L1A6NGE4 600 aa14.96□□□□□ -0.01
HMGN1-205ENST00000419378 ABCC9O60706 1549 aa14.83□□□□□ -0.04
HMGN1-205ENST00000419378 MYCNP04198 464 aaPredicted RBP14.76□□□□□ -0.05
HMGN1-205ENST00000419378 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.73□□□□□ -0.051e-6■■□□□ 12.8
HMGN1-205ENST00000419378 ATXN8OSP0DMR3 200 aa14.58□□□□□ -0.08
HMGN1-205ENST00000419378 U3KPZ7 1027 aaPredicted RBP14.54□□□□□ -0.08
HMGN1-205ENST00000419378 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.43□□□□□ -0.1
HMGN1-205ENST00000419378 HNRNPUL2Q1KMD3 747 aaKnown RBP14.43□□□□□ -0.1
HMGN1-205ENST00000419378 SAMD1Q6SPF0 538 aaPredicted RBP14.42□□□□□ -0.1
HMGN1-205ENST00000419378 ATF5Q9Y2D1 282 aaPredicted RBP14.39□□□□□ -0.11
HMGN1-205ENST00000419378 RB1CC1Q8TDY2 1594 aa14.24□□□□□ -0.13
HMGN1-205ENST00000419378 NACADO15069 1562 aa14.2□□□□□ -0.14
HMGN1-205ENST00000419378 APLP2Q06481 763 aa14.18□□□□□ -0.14
HMGN1-205ENST00000419378 RNF39Q9H2S5 420 aa14.16□□□□□ -0.14
HMGN1-205ENST00000419378 DCAF8L2P0C7V8 631 aa14.11□□□□□ -0.15
HMGN1-205ENST00000419378 ZCCHC6Q5VYS8 1495 aaKnown RBP14.11□□□□□ -0.15
HMGN1-205ENST00000419378 ZNF219Q9P2Y4 722 aaPredicted RBP14.1□□□□□ -0.15
HMGN1-205ENST00000419378 MYO15BQ96JP2 1530 aa14.1□□□□□ -0.15
HMGN1-205ENST00000419378 CACNB1Q02641 598 aaPredicted RBP14.09□□□□□ -0.15
HMGN1-205ENST00000419378 SPINK5Q9NQ38 1064 aaPredicted RBP14.04□□□□□ -0.16
HMGN1-205ENST00000419378 FKBP8Q14318 412 aa14.03□□□□□ -0.16
HMGN1-205ENST00000419378 DCAF1Q9Y4B6 1507 aa14.01□□□□□ -0.17
HMGN1-205ENST00000419378 C1QBPQ07021 282 aaKnown RBP14□□□□□ -0.17
HMGN1-205ENST00000419378 TRHP20396 242 aaPredicted RBP13.98□□□□□ -0.17
HMGN1-205ENST00000419378 CAPN15O75808 1086 aa13.96□□□□□ -0.17
HMGN1-205ENST00000419378 UNC13AQ9UPW8 1703 aa13.93□□□□□ -0.18
HMGN1-205ENST00000419378 POLA2Q14181 598 aa13.84□□□□□ -0.19
HMGN1-205ENST00000419378 PABPN1Q86U42 306 aaKnown RBP eCLIP13.82□□□□□ -0.2
HMGN1-205ENST00000419378 BICRAQ9NZM4 1560 aa13.82□□□□□ -0.2
HMGN1-205ENST00000419378 MKRN4PQ13434 485 aaPredicted RBP13.78□□□□□ -0.2
HMGN1-205ENST00000419378 SCRIBQ14160 1630 aa13.78□□□□□ -0.2
HMGN1-205ENST00000419378 ABCB7O75027 752 aa13.74□□□□□ -0.21
HMGN1-205ENST00000419378 FBLN2P98095 1184 aa13.72□□□□□ -0.21
HMGN1-205ENST00000419378 SHROOM4Q9ULL8 1493 aa13.67□□□□□ -0.22
HMGN1-205ENST00000419378 SPDYE4A6NLX3 237 aa13.64□□□□□ -0.23
HMGN1-205ENST00000419378 DSG3P32926 999 aa13.62□□□□□ -0.23
HMGN1-205ENST00000419378 ZBTB12Q9Y330 459 aaPredicted RBP13.59□□□□□ -0.23
HMGN1-205ENST00000419378 EIF4G1Q04637 1599 aaKnown RBP13.46□□□□□ -0.25
HMGN1-205ENST00000419378 PROM2Q8N271 834 aa13.44□□□□□ -0.26
HMGN1-205ENST00000419378 RTN4Q9NQC3 1192 aaKnown RBP13.44□□□□□ -0.26
HMGN1-205ENST00000419378 CC2D2AQ9P2K1 1620 aa13.42□□□□□ -0.26
HMGN1-205ENST00000419378 AMER1Q5JTC6 1135 aaPredicted RBP13.41□□□□□ -0.26
HMGN1-205ENST00000419378 FBXO3Q9UK99 471 aa13.38□□□□□ -0.27
HMGN1-205ENST00000419378 OSCARQ8IYS5 282 aa13.36□□□□□ -0.27
HMGN1-205ENST00000419378 CECR2Q9BXF3 1484 aa13.34□□□□□ -0.27
HMGN1-205ENST00000419378 ZNF692Q9BU19 519 aaPredicted RBP13.3□□□□□ -0.28
HMGN1-205ENST00000419378 SPDYE2BA6NHP3 402 aa13.27□□□□□ -0.29
HMGN1-205ENST00000419378 SPDYE6P0CI01 402 aa13.27□□□□□ -0.29
HMGN1-205ENST00000419378 SPDYE2Q495Y8 402 aa13.27□□□□□ -0.29
HMGN1-205ENST00000419378 VASPP50552 380 aaPredicted RBP13.22□□□□□ -0.29
HMGN1-205ENST00000419378 SSUH2Q9Y2M2 353 aa13.21□□□□□ -0.29
HMGN1-205ENST00000419378 SMARCA4P51532 1647 aa13.17□□□□□ -0.3
HMGN1-205ENST00000419378 BAZ1AQ9NRL2 1556 aaPredicted RBP13.13□□□□□ -0.31
HMGN1-205ENST00000419378 ATAD2BQ9ULI0 1458 aa13.1□□□□□ -0.31
HMGN1-205ENST00000419378 NCAPD3P42695 1498 aa13.1□□□□□ -0.31
HMGN1-205ENST00000419378 SMARCA2P51531 1590 aa13.08□□□□□ -0.32
HMGN1-205ENST00000419378 IFNLR1Q8IU57 520 aaPredicted RBP13.08□□□□□ -0.32
HMGN1-205ENST00000419378 MROH2BQ7Z745 1585 aa13.05□□□□□ -0.32
HMGN1-205ENST00000419378 HMGXB3Q12766 1538 aa13.04□□□□□ -0.32
HMGN1-205ENST00000419378 PEG3Q9GZU2 1588 aa13.04□□□□□ -0.32
HMGN1-205ENST00000419378 STAG3Q9UJ98 1225 aa13.02□□□□□ -0.33
HMGN1-205ENST00000419378 BAZ1BQ9UIG0 1483 aaKnown RBP12.99□□□□□ -0.33
HMGN1-205ENST00000419378 RBM42Q9BTD8 480 aaKnown RBP12.93□□□□□ -0.34
HMGN1-205ENST00000419378 KLHL34Q8N239 644 aa12.92□□□□□ -0.34
HMGN1-205ENST00000419378 PLCD3Q8N3E9 789 aa12.92□□□□□ -0.34
HMGN1-205ENST00000419378 WIZO95785 1651 aa12.9□□□□□ -0.34
HMGN1-205ENST00000419378 MIER1Q8N108 512 aa12.9□□□□□ -0.34
HMGN1-205ENST00000419378 AKT1S1Q96B36 256 aa12.87□□□□□ -0.35
HMGN1-205ENST00000419378 RSF1Q96T23 1441 aaPredicted RBP12.87□□□□□ -0.35
HMGN1-205ENST00000419378 SPOCK2Q92563 424 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms