RNA–Protein interactions for RNA: ENST00000463631.1

HMGN1-209, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 583 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-209ENST00000463631 NISCHQ9Y2I1 1504 aa43.95■■■■■ 4.63
HMGN1-209ENST00000463631 ABCC9O60706 1549 aa39.65■■■■□ 3.94
HMGN1-209ENST00000463631 CCDC180Q9P1Z9 1646 aa39.64■■■■□ 3.94
HMGN1-209ENST00000463631 RB1CC1Q8TDY2 1594 aa37.76■■■■□ 3.63
HMGN1-209ENST00000463631 NACADO15069 1562 aa37.47■■■■□ 3.59
HMGN1-209ENST00000463631 DNAJC5BQ9UF47 199 aa37.33■■■■□ 3.57
HMGN1-209ENST00000463631 MYO15BQ96JP2 1530 aa36.96■■■■□ 3.51
HMGN1-209ENST00000463631 UNC13AQ9UPW8 1703 aa36.91■■■■□ 3.5
HMGN1-209ENST00000463631 DCAF8L2P0C7V8 631 aa36.9■■■■□ 3.5
HMGN1-209ENST00000463631 PABPN1Q86U42 306 aaKnown RBP eCLIP36.78■■■■□ 3.48
HMGN1-209ENST00000463631 BICRAQ9NZM4 1560 aa36.68■■■■□ 3.46
HMGN1-209ENST00000463631 ZCCHC6Q5VYS8 1495 aaKnown RBP36.42■■■■□ 3.42
HMGN1-209ENST00000463631 DCAF1Q9Y4B6 1507 aa36.39■■■■□ 3.42
HMGN1-209ENST00000463631 SHROOM4Q9ULL8 1493 aa36.28■■■■□ 3.4
HMGN1-209ENST00000463631 SCRIBQ14160 1630 aa35.96■■■■□ 3.35
HMGN1-209ENST00000463631 CC2D2AQ9P2K1 1620 aa35.87■■■■□ 3.33
HMGN1-209ENST00000463631 CECR2Q9BXF3 1484 aa35.79■■■■□ 3.32
HMGN1-209ENST00000463631 EIF4G1Q04637 1599 aaKnown RBP35.78■■■■□ 3.32
HMGN1-209ENST00000463631 NCAPD3P42695 1498 aa34.58■■■■□ 3.13
HMGN1-209ENST00000463631 DNAJC5Q9H3Z4 198 aa34.49■■■■□ 3.11
HMGN1-209ENST00000463631 ATAD2BQ9ULI0 1458 aa34.4■■■■□ 3.1
HMGN1-209ENST00000463631 CUX2O14529 1486 aa34.38■■■■□ 3.09
HMGN1-209ENST00000463631 HMGXB3Q12766 1538 aa34.35■■■■□ 3.09
HMGN1-209ENST00000463631 SMARCA4P51532 1647 aa34.35■■■■□ 3.09
HMGN1-209ENST00000463631 SMARCA2P51531 1590 aa34.35■■■■□ 3.09
HMGN1-209ENST00000463631 ERCC6Q03468 1493 aa34.27■■■■□ 3.08
HMGN1-209ENST00000463631 BAZ1AQ9NRL2 1556 aaPredicted RBP34.15■■■■□ 3.06
HMGN1-209ENST00000463631 PEG3Q9GZU2 1588 aa34.1■■■■□ 3.05
HMGN1-209ENST00000463631 BAZ1BQ9UIG0 1483 aaKnown RBP34.06■■■■□ 3.04
HMGN1-209ENST00000463631 NESP48681 1621 aa34.01■■■■□ 3.04
HMGN1-209ENST00000463631 LAMC3Q9Y6N6 1575 aa33.85■■■■□ 3.01
HMGN1-209ENST00000463631 THOC2Q8NI27 1593 aaKnown RBP33.83■■■■□ 3.01
HMGN1-209ENST00000463631 MROH2BQ7Z745 1585 aa33.82■■■■□ 3
HMGN1-209ENST00000463631 KIF21AQ7Z4S6 1674 aa33.64■■■□□ 2.98
HMGN1-209ENST00000463631 PDS5BQ9NTI5 1447 aa33.6■■■□□ 2.97
HMGN1-209ENST00000463631 CADPSQ9ULU8 1353 aa33.46■■■□□ 2.95
HMGN1-209ENST00000463631 WIZO95785 1651 aa33.4■■■□□ 2.94
HMGN1-209ENST00000463631 MRC2Q9UBG0 1479 aa33.35■■■□□ 2.93
HMGN1-209ENST00000463631 WDR62O43379 1518 aa33.32■■■□□ 2.92
HMGN1-209ENST00000463631 CEP164Q9UPV0 1460 aa33.16■■■□□ 2.9
HMGN1-209ENST00000463631 FANCD2Q9BXW9 1451 aa33.09■■■□□ 2.89
HMGN1-209ENST00000463631 CFTRP13569 1480 aa33.08■■■□□ 2.89
HMGN1-209ENST00000463631 RSF1Q96T23 1441 aaPredicted RBP33.04■■■□□ 2.88
HMGN1-209ENST00000463631 TOP2AP11388 1531 aaKnown RBP33.02■■■□□ 2.88
HMGN1-209ENST00000463631 URB2Q14146 1524 aaKnown RBP32.84■■■□□ 2.85
HMGN1-209ENST00000463631 PRDM2Q13029 1718 aa32.8■■■□□ 2.84
HMGN1-209ENST00000463631 TRIM41Q8WV44 630 aa32.76■■■□□ 2.83
HMGN1-209ENST00000463631 OSCARQ8IYS5 282 aa32.63■■■□□ 2.81
HMGN1-209ENST00000463631 CCDC88BA6NC98 1476 aa32.58■■■□□ 2.81
HMGN1-209ENST00000463631 IFT140Q96RY7 1462 aa32.51■■■□□ 2.79
HMGN1-209ENST00000463631 TOPBP1Q92547 1522 aa32.45■■■□□ 2.78
HMGN1-209ENST00000463631 ZNF608Q9ULD9 1512 aaPredicted RBP32.43■■■□□ 2.78
HMGN1-209ENST00000463631 ABCC8Q09428 1581 aa32.4■■■□□ 2.78
HMGN1-209ENST00000463631 DNMBPQ6XZF7 1577 aa32.35■■■□□ 2.77
HMGN1-209ENST00000463631 RIMBP3CA6NJZ7 1639 aa32.32■■■□□ 2.76
HMGN1-209ENST00000463631 RIMBP3BA6NNM3 1639 aa32.32■■■□□ 2.76
HMGN1-209ENST00000463631 RIMBP3Q9UFD9 1639 aa32.32■■■□□ 2.76
HMGN1-209ENST00000463631 EIF4G3O43432 1585 aaKnown RBP32.32■■■□□ 2.76
HMGN1-209ENST00000463631 TARBP1Q13395 1621 aaKnown RBP32.22■■■□□ 2.75
HMGN1-209ENST00000463631 ARHGEF11O15085 1522 aa32.21■■■□□ 2.75
HMGN1-209ENST00000463631 POLA1P09884 1462 aaPredicted RBP32.1■■■□□ 2.73
HMGN1-209ENST00000463631 CHD1O14646 1710 aa32.09■■■□□ 2.73
HMGN1-209ENST00000463631 AQRO60306 1485 aaKnown RBP eCLIP32.08■■■□□ 2.735e-16■■■■■ 28.5
HMGN1-209ENST00000463631 WDR97A6NE52 1622 aa31.96■■■□□ 2.71
HMGN1-209ENST00000463631 RAD54L2Q9Y4B4 1467 aa31.92■■■□□ 2.7
HMGN1-209ENST00000463631 SOGA1O94964 1423 aa31.89■■■□□ 2.7
HMGN1-209ENST00000463631 ARAP1Q96P48 1450 aa31.87■■■□□ 2.69
HMGN1-209ENST00000463631 FGD5Q6ZNL6 1462 aa31.86■■■□□ 2.69
HMGN1-209ENST00000463631 TDRD9Q8NDG6 1382 aaKnown RBP31.83■■■□□ 2.69
HMGN1-209ENST00000463631 CYB5RLQ6IPT4 315 aa31.82■■■□□ 2.68
HMGN1-209ENST00000463631 CUX1P39880 1505 aa31.81■■■□□ 2.68
HMGN1-209ENST00000463631 FBLN2P98095 1184 aa31.8■■■□□ 2.68
HMGN1-209ENST00000463631 SNAPC4Q5SXM2 1469 aa31.79■■■□□ 2.68
HMGN1-209ENST00000463631 MAGI1Q96QZ7 1491 aaPredicted RBP31.77■■■□□ 2.68
HMGN1-209ENST00000463631 CLASP1Q7Z460 1538 aa31.76■■■□□ 2.68
HMGN1-209ENST00000463631 GRIN2BQ13224 1484 aa31.7■■■□□ 2.66
HMGN1-209ENST00000463631 SYNJ1O43426 1573 aa31.69■■■□□ 2.66
HMGN1-209ENST00000463631 SYNJ2O15056 1496 aa31.65■■■□□ 2.66
HMGN1-209ENST00000463631 PBRM1Q86U86 1689 aa31.6■■■□□ 2.65
HMGN1-209ENST00000463631 CHMP7Q8WUX9 453 aaPredicted RBP31.59■■■□□ 2.65
HMGN1-209ENST00000463631 GAPVD1Q14C86 1478 aa31.54■■■□□ 2.64
HMGN1-209ENST00000463631 ABCA5Q8WWZ7 1642 aa31.53■■■□□ 2.64
HMGN1-209ENST00000463631 ABCA10Q8WWZ4 1543 aa31.53■■■□□ 2.64
HMGN1-209ENST00000463631 TRHP20396 242 aaPredicted RBP31.51■■■□□ 2.63
HMGN1-209ENST00000463631 WRNQ14191 1432 aaPredicted RBP eCLIP31.32■■■□□ 2.6
HMGN1-209ENST00000463631 GRIN2AQ12879 1464 aa31.31■■■□□ 2.6
HMGN1-209ENST00000463631 BIVM-ERCC5R4GMW8 1640 aa31.31■■■□□ 2.6
HMGN1-209ENST00000463631 ADAMTS12P58397 1594 aa31.3■■■□□ 2.6
HMGN1-209ENST00000463631 TOP2BQ02880 1626 aa31.28■■■□□ 2.6
HMGN1-209ENST00000463631 NUP160Q12769 1436 aa31.24■■■□□ 2.59
HMGN1-209ENST00000463631 SUPT5HO00267 1087 aaKnown RBP31.22■■■□□ 2.59
HMGN1-209ENST00000463631 CEP170Q5SW79 1584 aa31.2■■■□□ 2.58
HMGN1-209ENST00000463631 ERCC6L2Q5T890 1561 aa31.17■■■□□ 2.58
HMGN1-209ENST00000463631 SHROOM2Q13796 1616 aa31.16■■■□□ 2.58
HMGN1-209ENST00000463631 FHAD1B1AJZ9 1412 aa31.15■■■□□ 2.58
HMGN1-209ENST00000463631 ERICH3Q5RHP9 1530 aa31.14■■■□□ 2.58
HMGN1-209ENST00000463631 RUSC2Q8N2Y8 1516 aa30.88■■■□□ 2.53
HMGN1-209ENST00000463631 PRG4Q92954 1404 aaPredicted RBP30.87■■■□□ 2.53
HMGN1-209ENST00000463631 KIF13AQ9H1H9 1805 aa30.81■■■□□ 2.52
HMGN1-209ENST00000463631 JPH4Q96JJ6 628 aa30.77■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms