RNA–Protein interactions for RNA: ENST00000469528.5

GAPVD1-214, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 4

Gene GAPVD1, Length 466 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-214ENST00000469528 NISCHQ9Y2I1 1504 aa31.56■■■□□ 2.64
GAPVD1-214ENST00000469528 ABCC9O60706 1549 aa28.45■■■□□ 2.15
GAPVD1-214ENST00000469528 CCDC180Q9P1Z9 1646 aa28.32■■■□□ 2.12
GAPVD1-214ENST00000469528 RB1CC1Q8TDY2 1594 aa27.09■■□□□ 1.93
GAPVD1-214ENST00000469528 DCAF8L2P0C7V8 631 aa26.9■■□□□ 1.9
GAPVD1-214ENST00000469528 NACADO15069 1562 aa26.88■■□□□ 1.89
GAPVD1-214ENST00000469528 DNAJC5BQ9UF47 199 aa26.8■■□□□ 1.88
GAPVD1-214ENST00000469528 PABPN1Q86U42 306 aaKnown RBP eCLIP26.55■■□□□ 1.84
GAPVD1-214ENST00000469528 MYO15BQ96JP2 1530 aa26.49■■□□□ 1.83
GAPVD1-214ENST00000469528 UNC13AQ9UPW8 1703 aa26.28■■□□□ 1.8
GAPVD1-214ENST00000469528 BICRAQ9NZM4 1560 aa26.16■■□□□ 1.78
GAPVD1-214ENST00000469528 DCAF1Q9Y4B6 1507 aa26.09■■□□□ 1.77
GAPVD1-214ENST00000469528 ZCCHC6Q5VYS8 1495 aaKnown RBP26.08■■□□□ 1.77
GAPVD1-214ENST00000469528 SHROOM4Q9ULL8 1493 aa25.97■■□□□ 1.75
GAPVD1-214ENST00000469528 SCRIBQ14160 1630 aa25.76■■□□□ 1.71
GAPVD1-214ENST00000469528 CECR2Q9BXF3 1484 aa25.68■■□□□ 1.7
GAPVD1-214ENST00000469528 CC2D2AQ9P2K1 1620 aa25.67■■□□□ 1.7
GAPVD1-214ENST00000469528 EIF4G1Q04637 1599 aaKnown RBP25.6■■□□□ 1.69
GAPVD1-214ENST00000469528 NCAPD3P42695 1498 aa24.84■■□□□ 1.57
GAPVD1-214ENST00000469528 DNAJC5Q9H3Z4 198 aa24.83■■□□□ 1.57
GAPVD1-214ENST00000469528 ATAD2BQ9ULI0 1458 aa24.7■■□□□ 1.55
GAPVD1-214ENST00000469528 SMARCA2P51531 1590 aa24.67■■□□□ 1.54
GAPVD1-214ENST00000469528 ERCC6Q03468 1493 aa24.66■■□□□ 1.54
GAPVD1-214ENST00000469528 CUX2O14529 1486 aa24.64■■□□□ 1.53
GAPVD1-214ENST00000469528 SMARCA4P51532 1647 aa24.59■■□□□ 1.53
GAPVD1-214ENST00000469528 HMGXB3Q12766 1538 aa24.57■■□□□ 1.52
GAPVD1-214ENST00000469528 BAZ1AQ9NRL2 1556 aaPredicted RBP24.54■■□□□ 1.52
GAPVD1-214ENST00000469528 BAZ1BQ9UIG0 1483 aaKnown RBP24.48■■□□□ 1.51
GAPVD1-214ENST00000469528 PEG3Q9GZU2 1588 aa24.37■■□□□ 1.49
GAPVD1-214ENST00000469528 NESP48681 1621 aa24.36■■□□□ 1.49
GAPVD1-214ENST00000469528 MROH2BQ7Z745 1585 aa24.26■■□□□ 1.47
GAPVD1-214ENST00000469528 LAMC3Q9Y6N6 1575 aa24.26■■□□□ 1.47
GAPVD1-214ENST00000469528 PDS5BQ9NTI5 1447 aa24.23■■□□□ 1.47
GAPVD1-214ENST00000469528 CADPSQ9ULU8 1353 aa24.12■■□□□ 1.45
GAPVD1-214ENST00000469528 THOC2Q8NI27 1593 aaKnown RBP24.08■■□□□ 1.45
GAPVD1-214ENST00000469528 KIF21AQ7Z4S6 1674 aa23.99■■□□□ 1.43
GAPVD1-214ENST00000469528 WIZO95785 1651 aa23.95■■□□□ 1.42
GAPVD1-214ENST00000469528 MRC2Q9UBG0 1479 aa23.92■■□□□ 1.42
GAPVD1-214ENST00000469528 CEP164Q9UPV0 1460 aa23.81■■□□□ 1.4
GAPVD1-214ENST00000469528 WDR62O43379 1518 aa23.81■■□□□ 1.4
GAPVD1-214ENST00000469528 RSF1Q96T23 1441 aaPredicted RBP23.79■■□□□ 1.4
GAPVD1-214ENST00000469528 FANCD2Q9BXW9 1451 aa23.78■■□□□ 1.4
GAPVD1-214ENST00000469528 CFTRP13569 1480 aa23.76■■□□□ 1.39
GAPVD1-214ENST00000469528 TOP2AP11388 1531 aaKnown RBP23.68■■□□□ 1.38
GAPVD1-214ENST00000469528 TRIM41Q8WV44 630 aa23.67■■□□□ 1.38
GAPVD1-214ENST00000469528 OSCARQ8IYS5 282 aa23.65■■□□□ 1.38
GAPVD1-214ENST00000469528 URB2Q14146 1524 aaKnown RBP23.52■■□□□ 1.36
GAPVD1-214ENST00000469528 CCDC88BA6NC98 1476 aa23.46■■□□□ 1.35
GAPVD1-214ENST00000469528 PRDM2Q13029 1718 aa23.39■■□□□ 1.33
GAPVD1-214ENST00000469528 IFT140Q96RY7 1462 aa23.38■■□□□ 1.33
GAPVD1-214ENST00000469528 ABCC8Q09428 1581 aa23.38■■□□□ 1.33
GAPVD1-214ENST00000469528 TOPBP1Q92547 1522 aa23.28■■□□□ 1.32
GAPVD1-214ENST00000469528 ZNF608Q9ULD9 1512 aaPredicted RBP23.24■■□□□ 1.31
GAPVD1-214ENST00000469528 DNMBPQ6XZF7 1577 aa23.18■■□□□ 1.3
GAPVD1-214ENST00000469528 FBLN2P98095 1184 aa23.1■■□□□ 1.29
GAPVD1-214ENST00000469528 RIMBP3CA6NJZ7 1639 aa23.1■■□□□ 1.29
GAPVD1-214ENST00000469528 RIMBP3BA6NNM3 1639 aa23.1■■□□□ 1.29
GAPVD1-214ENST00000469528 RIMBP3Q9UFD9 1639 aa23.1■■□□□ 1.29
GAPVD1-214ENST00000469528 AQRO60306 1485 aaKnown RBP eCLIP23.1■■□□□ 1.29
GAPVD1-214ENST00000469528 EIF4G3O43432 1585 aaKnown RBP23.07■■□□□ 1.28
GAPVD1-214ENST00000469528 ARHGEF11O15085 1522 aa23.05■■□□□ 1.28
GAPVD1-214ENST00000469528 CYB5RLQ6IPT4 315 aa23.04■■□□□ 1.28
GAPVD1-214ENST00000469528 SOGA1O94964 1423 aa23.04■■□□□ 1.28
GAPVD1-214ENST00000469528 TARBP1Q13395 1621 aaKnown RBP23.03■■□□□ 1.28
GAPVD1-214ENST00000469528 POLA1P09884 1462 aaPredicted RBP23.03■■□□□ 1.28
GAPVD1-214ENST00000469528 TDRD9Q8NDG6 1382 aaKnown RBP22.97■■□□□ 1.27
GAPVD1-214ENST00000469528 RAD54L2Q9Y4B4 1467 aa22.95■■□□□ 1.26
GAPVD1-214ENST00000469528 CHMP7Q8WUX9 453 aaPredicted RBP22.94■■□□□ 1.26
GAPVD1-214ENST00000469528 CHD1O14646 1710 aa22.91■■□□□ 1.26
GAPVD1-214ENST00000469528 WDR97A6NE52 1622 aa22.89■■□□□ 1.25
GAPVD1-214ENST00000469528 FGD5Q6ZNL6 1462 aa22.87■■□□□ 1.25
GAPVD1-214ENST00000469528 TRHP20396 242 aaPredicted RBP22.87■■□□□ 1.25
GAPVD1-214ENST00000469528 GRIN2BQ13224 1484 aa22.81■■□□□ 1.24
GAPVD1-214ENST00000469528 SNAPC4Q5SXM2 1469 aa22.81■■□□□ 1.24
GAPVD1-214ENST00000469528 MAGI1Q96QZ7 1491 aaPredicted RBP22.81■■□□□ 1.24
GAPVD1-214ENST00000469528 CUX1P39880 1505 aa22.8■■□□□ 1.24
GAPVD1-214ENST00000469528 ARAP1Q96P48 1450 aa22.79■■□□□ 1.24
GAPVD1-214ENST00000469528 SUPT5HO00267 1087 aaKnown RBP22.78■■□□□ 1.24
GAPVD1-214ENST00000469528 SYNJ1O43426 1573 aa22.75■■□□□ 1.23
GAPVD1-214ENST00000469528 SYNJ2O15056 1496 aa22.73■■□□□ 1.23
GAPVD1-214ENST00000469528 GAPVD1Q14C86 1478 aa22.72■■□□□ 1.23
GAPVD1-214ENST00000469528 CLASP1Q7Z460 1538 aa22.67■■□□□ 1.22
GAPVD1-214ENST00000469528 ABCA10Q8WWZ4 1543 aa22.64■■□□□ 1.21
GAPVD1-214ENST00000469528 WRNQ14191 1432 aaPredicted RBP eCLIP22.61■■□□□ 1.21
GAPVD1-214ENST00000469528 PBRM1Q86U86 1689 aa22.57■■□□□ 1.2
GAPVD1-214ENST00000469528 ABCA5Q8WWZ7 1642 aa22.52■■□□□ 1.2
GAPVD1-214ENST00000469528 GRIN2AQ12879 1464 aa22.47■■□□□ 1.19
GAPVD1-214ENST00000469528 FHAD1B1AJZ9 1412 aa22.44■■□□□ 1.18
GAPVD1-214ENST00000469528 TOP2BQ02880 1626 aa22.44■■□□□ 1.18
GAPVD1-214ENST00000469528 NUP160Q12769 1436 aa22.4■■□□□ 1.18
GAPVD1-214ENST00000469528 BIVM-ERCC5R4GMW8 1640 aa22.4■■□□□ 1.18
GAPVD1-214ENST00000469528 ERICH3Q5RHP9 1530 aa22.37■■□□□ 1.17
GAPVD1-214ENST00000469528 ADAMTS12P58397 1594 aa22.36■■□□□ 1.17
GAPVD1-214ENST00000469528 AEBP2Q6ZN18 517 aaPredicted RBP22.34■■□□□ 1.17
GAPVD1-214ENST00000469528 JPH4Q96JJ6 628 aa22.33■■□□□ 1.17
GAPVD1-214ENST00000469528 CEP170Q5SW79 1584 aa22.32■■□□□ 1.16
GAPVD1-214ENST00000469528 ERCC6L2Q5T890 1561 aa22.26■■□□□ 1.15
GAPVD1-214ENST00000469528 SHROOM2Q13796 1616 aa22.24■■□□□ 1.15
GAPVD1-214ENST00000469528 PRG4Q92954 1404 aaPredicted RBP22.24■■□□□ 1.15
GAPVD1-214ENST00000469528 NPM1P06748 294 aaKnown RBP eCLIP22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms