RNA–Protein interactions for RNA: ENST00000380749.9

HMGN1-204, Transcript of high mobility group nucleosome binding domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN1, Length 1,383 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-204ENST00000380749 NISCHQ9Y2I1 1504 aa43.1■■■■■ 4.49
HMGN1-204ENST00000380749 CCDC180Q9P1Z9 1646 aa38.79■■■■□ 3.8
HMGN1-204ENST00000380749 ABCC9O60706 1549 aa38.45■■■■□ 3.74
HMGN1-204ENST00000380749 RB1CC1Q8TDY2 1594 aa36.77■■■■□ 3.48
HMGN1-204ENST00000380749 NACADO15069 1562 aa36.53■■■■□ 3.44
HMGN1-204ENST00000380749 DCAF8L2P0C7V8 631 aa36.16■■■■□ 3.38
HMGN1-204ENST00000380749 MYO15BQ96JP2 1530 aa36.07■■■■□ 3.36
HMGN1-204ENST00000380749 UNC13AQ9UPW8 1703 aa36.05■■■■□ 3.36
HMGN1-204ENST00000380749 ZCCHC6Q5VYS8 1495 aaKnown RBP35.78■■■■□ 3.32
HMGN1-204ENST00000380749 DNAJC5BQ9UF47 199 aa35.76■■■■□ 3.31
HMGN1-204ENST00000380749 PABPN1Q86U42 306 aaKnown RBP eCLIP35.7■■■■□ 3.31
HMGN1-204ENST00000380749 DCAF1Q9Y4B6 1507 aa35.65■■■■□ 3.3
HMGN1-204ENST00000380749 BICRAQ9NZM4 1560 aa35.63■■■■□ 3.29
HMGN1-204ENST00000380749 SHROOM4Q9ULL8 1493 aa35.26■■■■□ 3.24
HMGN1-204ENST00000380749 SCRIBQ14160 1630 aa35.26■■■■□ 3.23
HMGN1-204ENST00000380749 CC2D2AQ9P2K1 1620 aa34.81■■■■□ 3.16
HMGN1-204ENST00000380749 EIF4G1Q04637 1599 aaKnown RBP34.78■■■■□ 3.16
HMGN1-204ENST00000380749 CECR2Q9BXF3 1484 aa34.63■■■■□ 3.13
HMGN1-204ENST00000380749 SMARCA4P51532 1647 aa33.66■■■□□ 2.98
HMGN1-204ENST00000380749 NCAPD3P42695 1498 aa33.62■■■□□ 2.97
HMGN1-204ENST00000380749 SMARCA2P51531 1590 aa33.58■■■□□ 2.97
HMGN1-204ENST00000380749 ATAD2BQ9ULI0 1458 aa33.55■■■□□ 2.96
HMGN1-204ENST00000380749 HMGXB3Q12766 1538 aa33.51■■■□□ 2.95
HMGN1-204ENST00000380749 BAZ1AQ9NRL2 1556 aaPredicted RBP33.5■■■□□ 2.95
HMGN1-204ENST00000380749 PEG3Q9GZU2 1588 aa33.33■■■□□ 2.93
HMGN1-204ENST00000380749 BAZ1BQ9UIG0 1483 aaKnown RBP33.3■■■□□ 2.92
HMGN1-204ENST00000380749 ERCC6Q03468 1493 aa33.25■■■□□ 2.91
HMGN1-204ENST00000380749 MROH2BQ7Z745 1585 aa33.18■■■□□ 2.9
HMGN1-204ENST00000380749 CUX2O14529 1486 aa33.14■■■□□ 2.9
HMGN1-204ENST00000380749 NESP48681 1621 aa33.05■■■□□ 2.88
HMGN1-204ENST00000380749 LAMC3Q9Y6N6 1575 aa32.97■■■□□ 2.87
HMGN1-204ENST00000380749 WIZO95785 1651 aa32.86■■■□□ 2.85
HMGN1-204ENST00000380749 THOC2Q8NI27 1593 aaKnown RBP32.82■■■□□ 2.84
HMGN1-204ENST00000380749 KIF21AQ7Z4S6 1674 aa32.81■■■□□ 2.84
HMGN1-204ENST00000380749 DNAJC5Q9H3Z4 198 aa32.8■■■□□ 2.84
HMGN1-204ENST00000380749 PDS5BQ9NTI5 1447 aa32.69■■■□□ 2.82
HMGN1-204ENST00000380749 CADPSQ9ULU8 1353 aa32.6■■■□□ 2.81
HMGN1-204ENST00000380749 RSF1Q96T23 1441 aaPredicted RBP32.51■■■□□ 2.79
HMGN1-204ENST00000380749 TOP2AP11388 1531 aaKnown RBP32.47■■■□□ 2.79
HMGN1-204ENST00000380749 MRC2Q9UBG0 1479 aa32.43■■■□□ 2.78
HMGN1-204ENST00000380749 WDR62O43379 1518 aa32.37■■■□□ 2.77
HMGN1-204ENST00000380749 CEP164Q9UPV0 1460 aa32.34■■■□□ 2.77
HMGN1-204ENST00000380749 CFTRP13569 1480 aa32.29■■■□□ 2.76
HMGN1-204ENST00000380749 FANCD2Q9BXW9 1451 aa32.28■■■□□ 2.76
HMGN1-204ENST00000380749 PRDM2Q13029 1718 aa32.27■■■□□ 2.76
HMGN1-204ENST00000380749 CCDC88BA6NC98 1476 aa32■■■□□ 2.71
HMGN1-204ENST00000380749 URB2Q14146 1524 aaKnown RBP32■■■□□ 2.71
HMGN1-204ENST00000380749 TOPBP1Q92547 1522 aa31.69■■■□□ 2.66
HMGN1-204ENST00000380749 ABCC8Q09428 1581 aa31.67■■■□□ 2.66
HMGN1-204ENST00000380749 IFT140Q96RY7 1462 aa31.67■■■□□ 2.66
HMGN1-204ENST00000380749 DNMBPQ6XZF7 1577 aa31.65■■■□□ 2.66
HMGN1-204ENST00000380749 ZNF608Q9ULD9 1512 aaPredicted RBP31.55■■■□□ 2.64
HMGN1-204ENST00000380749 EIF4G3O43432 1585 aaKnown RBP31.52■■■□□ 2.64
HMGN1-204ENST00000380749 OSCARQ8IYS5 282 aa31.52■■■□□ 2.64
HMGN1-204ENST00000380749 TARBP1Q13395 1621 aaKnown RBP31.44■■■□□ 2.62
HMGN1-204ENST00000380749 TRIM41Q8WV44 630 aa31.44■■■□□ 2.62
HMGN1-204ENST00000380749 POLA1P09884 1462 aaPredicted RBP31.37■■■□□ 2.61
HMGN1-204ENST00000380749 CHD1O14646 1710 aa31.31■■■□□ 2.6
HMGN1-204ENST00000380749 RIMBP3CA6NJZ7 1639 aa31.26■■■□□ 2.59
HMGN1-204ENST00000380749 RIMBP3BA6NNM3 1639 aa31.26■■■□□ 2.59
HMGN1-204ENST00000380749 RIMBP3Q9UFD9 1639 aa31.26■■■□□ 2.59
HMGN1-204ENST00000380749 AQRO60306 1485 aaKnown RBP eCLIP31.25■■■□□ 2.592e-11■■■■■ 27.4
HMGN1-204ENST00000380749 WDR97A6NE52 1622 aa31.23■■■□□ 2.59
HMGN1-204ENST00000380749 FGD5Q6ZNL6 1462 aa31.2■■■□□ 2.59
HMGN1-204ENST00000380749 RAD54L2Q9Y4B4 1467 aa31.2■■■□□ 2.59
HMGN1-204ENST00000380749 CUX1P39880 1505 aa31.19■■■□□ 2.58
HMGN1-204ENST00000380749 SOGA1O94964 1423 aa31.18■■■□□ 2.58
HMGN1-204ENST00000380749 ARHGEF11O15085 1522 aa31.13■■■□□ 2.57
HMGN1-204ENST00000380749 SUPT5HO00267 1087 aaKnown RBP31.12■■■□□ 2.57
HMGN1-204ENST00000380749 TDRD9Q8NDG6 1382 aaKnown RBP31.07■■■□□ 2.56
HMGN1-204ENST00000380749 SNAPC4Q5SXM2 1469 aa31.02■■■□□ 2.56
HMGN1-204ENST00000380749 FBLN2P98095 1184 aa31.01■■■□□ 2.55
HMGN1-204ENST00000380749 PBRM1Q86U86 1689 aa31■■■□□ 2.55
HMGN1-204ENST00000380749 MAGI1Q96QZ7 1491 aaPredicted RBP30.98■■■□□ 2.55
HMGN1-204ENST00000380749 GRIN2BQ13224 1484 aa30.96■■■□□ 2.55
HMGN1-204ENST00000380749 SYNJ1O43426 1573 aa30.9■■■□□ 2.54
HMGN1-204ENST00000380749 ABCA5Q8WWZ7 1642 aa30.88■■■□□ 2.53
HMGN1-204ENST00000380749 ABCA10Q8WWZ4 1543 aa30.86■■■□□ 2.53
HMGN1-204ENST00000380749 CLASP1Q7Z460 1538 aa30.86■■■□□ 2.53
HMGN1-204ENST00000380749 GAPVD1Q14C86 1478 aa30.85■■■□□ 2.53
HMGN1-204ENST00000380749 SYNJ2O15056 1496 aa30.84■■■□□ 2.53
HMGN1-204ENST00000380749 BIVM-ERCC5R4GMW8 1640 aa30.83■■■□□ 2.53
HMGN1-204ENST00000380749 CHMP7Q8WUX9 453 aaPredicted RBP30.81■■■□□ 2.52
HMGN1-204ENST00000380749 ARAP1Q96P48 1450 aa30.81■■■□□ 2.52
HMGN1-204ENST00000380749 TOP2BQ02880 1626 aa30.8■■■□□ 2.52
HMGN1-204ENST00000380749 CYB5RLQ6IPT4 315 aa30.76■■■□□ 2.51
HMGN1-204ENST00000380749 WRNQ14191 1432 aaPredicted RBP eCLIP30.74■■■□□ 2.51
HMGN1-204ENST00000380749 ADAMTS12P58397 1594 aa30.63■■■□□ 2.49
HMGN1-204ENST00000380749 GRIN2AQ12879 1464 aa30.56■■■□□ 2.48
HMGN1-204ENST00000380749 ERICH3Q5RHP9 1530 aa30.51■■■□□ 2.48
HMGN1-204ENST00000380749 CEP170Q5SW79 1584 aa30.47■■■□□ 2.47
HMGN1-204ENST00000380749 FHAD1B1AJZ9 1412 aa30.47■■■□□ 2.47
HMGN1-204ENST00000380749 NUP160Q12769 1436 aa30.42■■■□□ 2.46
HMGN1-204ENST00000380749 TRHP20396 242 aaPredicted RBP30.41■■■□□ 2.46
HMGN1-204ENST00000380749 SHROOM2Q13796 1616 aa30.37■■■□□ 2.45
HMGN1-204ENST00000380749 ERCC6L2Q5T890 1561 aa30.33■■■□□ 2.45
HMGN1-204ENST00000380749 RUSC2Q8N2Y8 1516 aa30.21■■■□□ 2.43
HMGN1-204ENST00000380749 CUL7Q14999 1698 aa30.19■■■□□ 2.42
HMGN1-204ENST00000380749 KIF27Q86VH2 1401 aa30.13■■■□□ 2.41
HMGN1-204ENST00000380749 PRG4Q92954 1404 aaPredicted RBP30.1■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms