RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 NISCHQ9Y2I1 1504 aa36.88■■■■□ 3.49
HMGN1-208ENST00000443046 ABCC9O60706 1549 aa33.57■■■□□ 2.96
HMGN1-208ENST00000443046 CCDC180Q9P1Z9 1646 aa33.26■■■□□ 2.91
HMGN1-208ENST00000443046 DNAJC5BQ9UF47 199 aa31.94■■■□□ 2.7
HMGN1-208ENST00000443046 RB1CC1Q8TDY2 1594 aa31.81■■■□□ 2.68
HMGN1-208ENST00000443046 NACADO15069 1562 aa31.53■■■□□ 2.64
HMGN1-208ENST00000443046 PABPN1Q86U42 306 aaKnown RBP eCLIP31.2■■■□□ 2.59
HMGN1-208ENST00000443046 DCAF8L2P0C7V8 631 aa31.15■■■□□ 2.58
HMGN1-208ENST00000443046 UNC13AQ9UPW8 1703 aa31.13■■■□□ 2.57
HMGN1-208ENST00000443046 MYO15BQ96JP2 1530 aa31.04■■■□□ 2.56
HMGN1-208ENST00000443046 BICRAQ9NZM4 1560 aa30.97■■■□□ 2.55
HMGN1-208ENST00000443046 SHROOM4Q9ULL8 1493 aa30.51■■■□□ 2.48
HMGN1-208ENST00000443046 DCAF1Q9Y4B6 1507 aa30.48■■■□□ 2.47
HMGN1-208ENST00000443046 ZCCHC6Q5VYS8 1495 aaKnown RBP30.48■■■□□ 2.47
HMGN1-208ENST00000443046 CC2D2AQ9P2K1 1620 aa30.35■■■□□ 2.45
HMGN1-208ENST00000443046 CECR2Q9BXF3 1484 aa30.31■■■□□ 2.44
HMGN1-208ENST00000443046 SCRIBQ14160 1630 aa30.21■■■□□ 2.43
HMGN1-208ENST00000443046 EIF4G1Q04637 1599 aaKnown RBP30.2■■■□□ 2.42
HMGN1-208ENST00000443046 DNAJC5Q9H3Z4 198 aa29.6■■■□□ 2.33
HMGN1-208ENST00000443046 CUX2O14529 1486 aa29.15■■■□□ 2.26
HMGN1-208ENST00000443046 NCAPD3P42695 1498 aa29.15■■■□□ 2.26
HMGN1-208ENST00000443046 ATAD2BQ9ULI0 1458 aa28.98■■■□□ 2.23
HMGN1-208ENST00000443046 ERCC6Q03468 1493 aa28.97■■■□□ 2.23
HMGN1-208ENST00000443046 HMGXB3Q12766 1538 aa28.87■■■□□ 2.21
HMGN1-208ENST00000443046 SMARCA2P51531 1590 aa28.85■■■□□ 2.21
HMGN1-208ENST00000443046 SMARCA4P51532 1647 aa28.83■■■□□ 2.21
HMGN1-208ENST00000443046 NESP48681 1621 aa28.76■■■□□ 2.2
HMGN1-208ENST00000443046 BAZ1BQ9UIG0 1483 aaKnown RBP28.63■■■□□ 2.17
HMGN1-208ENST00000443046 BAZ1AQ9NRL2 1556 aaPredicted RBP28.62■■■□□ 2.17
HMGN1-208ENST00000443046 PEG3Q9GZU2 1588 aa28.62■■■□□ 2.17
HMGN1-208ENST00000443046 THOC2Q8NI27 1593 aaKnown RBP28.57■■■□□ 2.16
HMGN1-208ENST00000443046 LAMC3Q9Y6N6 1575 aa28.51■■■□□ 2.15
HMGN1-208ENST00000443046 MROH2BQ7Z745 1585 aa28.4■■■□□ 2.14
HMGN1-208ENST00000443046 KIF21AQ7Z4S6 1674 aa28.36■■■□□ 2.13
HMGN1-208ENST00000443046 PDS5BQ9NTI5 1447 aa28.35■■■□□ 2.13
HMGN1-208ENST00000443046 CADPSQ9ULU8 1353 aa28.22■■■□□ 2.11
HMGN1-208ENST00000443046 MRC2Q9UBG0 1479 aa28.12■■■□□ 2.09
HMGN1-208ENST00000443046 WDR62O43379 1518 aa28.09■■■□□ 2.09
HMGN1-208ENST00000443046 WIZO95785 1651 aa28.02■■■□□ 2.08
HMGN1-208ENST00000443046 TRIM41Q8WV44 630 aa28■■■□□ 2.07
HMGN1-208ENST00000443046 CEP164Q9UPV0 1460 aa27.91■■■□□ 2.06
HMGN1-208ENST00000443046 FANCD2Q9BXW9 1451 aa27.87■■■□□ 2.05
HMGN1-208ENST00000443046 CFTRP13569 1480 aa27.83■■■□□ 2.04
HMGN1-208ENST00000443046 OSCARQ8IYS5 282 aa27.73■■■□□ 2.03
HMGN1-208ENST00000443046 URB2Q14146 1524 aaKnown RBP27.69■■■□□ 2.02
HMGN1-208ENST00000443046 RSF1Q96T23 1441 aaPredicted RBP27.68■■■□□ 2.02
HMGN1-208ENST00000443046 TOP2AP11388 1531 aaKnown RBP27.65■■■□□ 2.02
HMGN1-208ENST00000443046 PRDM2Q13029 1718 aa27.48■■□□□ 1.99
HMGN1-208ENST00000443046 RIMBP3CA6NJZ7 1639 aa27.41■■□□□ 1.98
HMGN1-208ENST00000443046 RIMBP3BA6NNM3 1639 aa27.41■■□□□ 1.98
HMGN1-208ENST00000443046 RIMBP3Q9UFD9 1639 aa27.41■■□□□ 1.98
HMGN1-208ENST00000443046 IFT140Q96RY7 1462 aa27.4■■□□□ 1.98
HMGN1-208ENST00000443046 ZNF608Q9ULD9 1512 aaPredicted RBP27.4■■□□□ 1.98
HMGN1-208ENST00000443046 CCDC88BA6NC98 1476 aa27.36■■□□□ 1.97
HMGN1-208ENST00000443046 TOPBP1Q92547 1522 aa27.31■■□□□ 1.96
HMGN1-208ENST00000443046 ARHGEF11O15085 1522 aa27.29■■□□□ 1.96
HMGN1-208ENST00000443046 ABCC8Q09428 1581 aa27.23■■□□□ 1.95
HMGN1-208ENST00000443046 EIF4G3O43432 1585 aaKnown RBP27.21■■□□□ 1.95
HMGN1-208ENST00000443046 DNMBPQ6XZF7 1577 aa27.17■■□□□ 1.94
HMGN1-208ENST00000443046 TARBP1Q13395 1621 aaKnown RBP27.12■■□□□ 1.93
HMGN1-208ENST00000443046 AQRO60306 1485 aaKnown RBP eCLIP27.09■■□□□ 1.932e-11■■■■■ 27.4
HMGN1-208ENST00000443046 CYB5RLQ6IPT4 315 aa27.07■■□□□ 1.92
HMGN1-208ENST00000443046 CHD1O14646 1710 aa27.07■■□□□ 1.92
HMGN1-208ENST00000443046 POLA1P09884 1462 aaPredicted RBP27■■□□□ 1.91
HMGN1-208ENST00000443046 ARAP1Q96P48 1450 aa27■■□□□ 1.91
HMGN1-208ENST00000443046 FBLN2P98095 1184 aa26.91■■□□□ 1.9
HMGN1-208ENST00000443046 RAD54L2Q9Y4B4 1467 aa26.9■■□□□ 1.9
HMGN1-208ENST00000443046 SOGA1O94964 1423 aa26.86■■□□□ 1.89
HMGN1-208ENST00000443046 TDRD9Q8NDG6 1382 aaKnown RBP26.85■■□□□ 1.89
HMGN1-208ENST00000443046 TRHP20396 242 aaPredicted RBP26.84■■□□□ 1.89
HMGN1-208ENST00000443046 WDR97A6NE52 1622 aa26.82■■□□□ 1.88
HMGN1-208ENST00000443046 CLASP1Q7Z460 1538 aa26.8■■□□□ 1.88
HMGN1-208ENST00000443046 SNAPC4Q5SXM2 1469 aa26.79■■□□□ 1.88
HMGN1-208ENST00000443046 FGD5Q6ZNL6 1462 aa26.76■■□□□ 1.87
HMGN1-208ENST00000443046 MAGI1Q96QZ7 1491 aaPredicted RBP26.73■■□□□ 1.87
HMGN1-208ENST00000443046 CUX1P39880 1505 aa26.7■■□□□ 1.87
HMGN1-208ENST00000443046 SYNJ1O43426 1573 aa26.7■■□□□ 1.86
HMGN1-208ENST00000443046 CHMP7Q8WUX9 453 aaPredicted RBP26.69■■□□□ 1.86
HMGN1-208ENST00000443046 GRIN2BQ13224 1484 aa26.68■■□□□ 1.86
HMGN1-208ENST00000443046 SYNJ2O15056 1496 aa26.64■■□□□ 1.86
HMGN1-208ENST00000443046 GAPVD1Q14C86 1478 aa26.53■■□□□ 1.84
HMGN1-208ENST00000443046 PBRM1Q86U86 1689 aa26.53■■□□□ 1.84
HMGN1-208ENST00000443046 ABCA10Q8WWZ4 1543 aa26.47■■□□□ 1.83
HMGN1-208ENST00000443046 ABCA5Q8WWZ7 1642 aa26.47■■□□□ 1.83
HMGN1-208ENST00000443046 ERCC6L2Q5T890 1561 aa26.33■■□□□ 1.81
HMGN1-208ENST00000443046 GRIN2AQ12879 1464 aa26.33■■□□□ 1.81
HMGN1-208ENST00000443046 AEBP2Q6ZN18 517 aaPredicted RBP26.32■■□□□ 1.8
HMGN1-208ENST00000443046 NUP160Q12769 1436 aa26.3■■□□□ 1.8
HMGN1-208ENST00000443046 ADAMTS12P58397 1594 aa26.27■■□□□ 1.8
HMGN1-208ENST00000443046 CEP170Q5SW79 1584 aa26.26■■□□□ 1.79
HMGN1-208ENST00000443046 WRNQ14191 1432 aaPredicted RBP eCLIP26.25■■□□□ 1.79
HMGN1-208ENST00000443046 SHROOM2Q13796 1616 aa26.23■■□□□ 1.79
HMGN1-208ENST00000443046 FHAD1B1AJZ9 1412 aa26.19■■□□□ 1.78
HMGN1-208ENST00000443046 TOP2BQ02880 1626 aa26.17■■□□□ 1.78
HMGN1-208ENST00000443046 BIVM-ERCC5R4GMW8 1640 aa26.17■■□□□ 1.78
HMGN1-208ENST00000443046 ERICH3Q5RHP9 1530 aa26.13■■□□□ 1.77
HMGN1-208ENST00000443046 KIF13AQ9H1H9 1805 aa26.07■■□□□ 1.76
HMGN1-208ENST00000443046 SUPT5HO00267 1087 aaKnown RBP26.05■■□□□ 1.76
HMGN1-208ENST00000443046 PRG4Q92954 1404 aaPredicted RBP26.03■■□□□ 1.76
HMGN1-208ENST00000443046 JPH4Q96JJ6 628 aa26■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms