Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 RCC1-203ENST00000373833 2844 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.362e-11■■■■■ 62.9
UPF1Q92900 RCC1-204ENST00000398958 2715 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.42e-11■■■■■ 62.9
UPF1Q92900 PHC2-210ENST00000485928 2548 ntTSL 222.91■■□□□ 1.262e-10■■■■■ 62.9
UPF1Q92900 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.12e-10■■■■■ 62.9
UPF1Q92900 PHC2-203ENST00000373422 2799 ntTSL 2 BASIC13.71□□□□□ -0.212e-10■■■■■ 62.9
UPF1Q92900 PHC2-201ENST00000257118 3870 ntAPPRIS P4 TSL 1 (best) BASIC11.76□□□□□ -0.532e-10■■■■■ 62.9
UPF1Q92900 PHC2-204ENST00000431992 3789 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.632e-10■■■■■ 62.9
UPF1Q92900 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.178e-25■■■■■ 62.8
UPF1Q92900 ST6GAL1-215ENST00000457772 3947 ntTSL 5 BASIC12.38□□□□□ -0.438e-25■■■■■ 62.8
UPF1Q92900 ST6GAL1-220ENST00000470633 4893 ntTSL 27.84□□□□□ -1.158e-25■■■■■ 62.8
UPF1Q92900 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.28e-25■■■■■ 62.8
UPF1Q92900 PTBP1-206ENST00000585856 1217 ntTSL 239.63■■■■□ 3.935e-28■■■■■ 62.8
UPF1Q92900 PTBP1-207ENST00000585932 1030 ntTSL 329.67■■■□□ 2.345e-28■■■■■ 62.8
UPF1Q92900 RANGAP1-205ENST00000446258 759 ntTSL 319.88■□□□□ 0.774e-15■■■■■ 62.8
UPF1Q92900 ARHGDIA-210ENST00000582520 245 ntTSL 314.49□□□□□ -0.092e-21■■■■■ 62.6
UPF1Q92900 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.852e-13■■■■■ 62.5
UPF1Q92900 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC25.36■■□□□ 1.659e-8■■■■■ 62.4
UPF1Q92900 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC19.5■□□□□ 0.718e-8■■■■■ 62.4
UPF1Q92900 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.575e-12■■■■■ 62.3
UPF1Q92900 CLPTM1-205ENST00000586915 775 ntTSL 223.79■■□□□ 1.45e-12■■■■■ 62.3
UPF1Q92900 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC17.69■□□□□ 0.425e-12■■■■■ 62.3
UPF1Q92900 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.54■□□□□ 0.245e-12■■■■■ 62.3
UPF1Q92900 PEX5-214ENST00000541850 386 ntTSL 318.26■□□□□ 0.513e-13■■■■■ 62.3
UPF1Q92900 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.013e-13■■■■■ 62.3
UPF1Q92900 PEX5-201ENST00000266563 3252 ntTSL 1 (best) BASIC14.79□□□□□ -0.043e-13■■■■■ 62.3
UPF1Q92900 PEX5-202ENST00000266564 3170 ntTSL 1 (best) BASIC11.04□□□□□ -0.643e-13■■■■■ 62.3
UPF1Q92900 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.036e-21■■■■■ 62.2
UPF1Q92900 PRKCSH-203ENST00000586486 1613 ntTSL 1 (best)21.88■■□□□ 1.095e-15■■■■■ 62.2
UPF1Q92900 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.815e-15■■■■■ 62.2
UPF1Q92900 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.395e-15■■■■■ 62.2
UPF1Q92900 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.355e-15■■■■■ 62.2
UPF1Q92900 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.265e-15■■■■■ 62.2
UPF1Q92900 TMED9-206ENST00000513799 772 ntTSL 216.32■□□□□ 0.24e-24■■■■■ 62.2
UPF1Q92900 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC14.52□□□□□ -0.091e-8■■■■■ 62.1
UPF1Q92900 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC37.01■■■■□ 3.524e-20■■■■■ 62.1
UPF1Q92900 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.157e-14■■■■■ 61.9
UPF1Q92900 TIMP2-204ENST00000586057 3389 ntTSL 1 (best) BASIC11.38□□□□□ -0.597e-14■■■■■ 61.9
UPF1Q92900 TIMP2-203ENST00000585421 3345 ntTSL 3 BASIC11.12□□□□□ -0.637e-14■■■■■ 61.9
UPF1Q92900 TIMP2-202ENST00000536189 3415 ntTSL 2 BASIC10.88□□□□□ -0.677e-14■■■■■ 61.9
UPF1Q92900 EFNA1-204ENST00000474413 1083 ntTSL 325.23■■□□□ 1.632e-35■■■■■ 61.9
UPF1Q92900 PRKAR1B-202ENST00000400758 888 ntTSL 335.24■■■■□ 3.231e-16■■■■■ 61.9
UPF1Q92900 EMC1-201ENST00000375199 5408 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.66e-9■■■■■ 61.8
UPF1Q92900 EMC1-208ENST00000480380 3892 ntTSL 27.28□□□□□ -1.246e-9■■■■■ 61.8
UPF1Q92900 CHEK1-203ENST00000428830 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.121e-11■■■■■ 61.6
UPF1Q92900 CHEK1-206ENST00000524737 1799 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.171e-13■■■■■ 61.6
UPF1Q92900 CHEK1-205ENST00000498122 755 ntTSL 212.18□□□□□ -0.461e-11■■■■■ 61.6
UPF1Q92900 CHEK1-204ENST00000438015 4153 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.721e-11■■■■■ 61.6
UPF1Q92900 CHEK1-213ENST00000532449 4051 ntTSL 2 BASIC10.4□□□□□ -0.741e-11■■■■■ 61.6
UPF1Q92900 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.141e-11■■■■■ 61.6
UPF1Q92900 POFUT1-203ENST00000434904 493 ntTSL 58.21□□□□□ -1.13e-7■■■■■ 61.6
UPF1Q92900 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC37.59■■■■□ 3.611e-31■■■■■ 61.4
UPF1Q92900 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC29.26■■■□□ 2.271e-31■■■■■ 61.4
UPF1Q92900 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC24.94■■□□□ 1.581e-31■■■■■ 61.4
UPF1Q92900 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC24.79■■□□□ 1.561e-31■■■■■ 61.4
UPF1Q92900 CD151-220ENST00000532045 1803 ntTSL 521.01■□□□□ 0.951e-31■■■■■ 61.4
UPF1Q92900 CD151-218ENST00000530726 1407 ntTSL 518.65■□□□□ 0.581e-31■■■■■ 61.4
UPF1Q92900 CD151-205ENST00000525181 364 ntTSL 313.98□□□□□ -0.171e-31■■■■■ 61.4
UPF1Q92900 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC25.15■■□□□ 1.621e-9■■■■■ 61.4
UPF1Q92900 COLGALT1-202ENST00000593832 2941 ntTSL 214.44□□□□□ -0.12e-18■■■■■ 61.4
UPF1Q92900 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.221e-17■■■■■ 61.3
UPF1Q92900 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC22.2■■□□□ 1.145e-7■■■■■ 61.3
UPF1Q92900 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.762e-20■■■■■ 61.3
UPF1Q92900 F11R-204ENST00000537746 1245 ntTSL 2 BASIC19.17■□□□□ 0.664e-24■■■■■ 61.2
UPF1Q92900 NRF1-205ENST00000393232 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.362e-7■■■■■ 61.1
UPF1Q92900 NRF1-204ENST00000393230 3523 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.492e-7■■■■■ 61.1
UPF1Q92900 NRF1-203ENST00000353868 3568 ntTSL 5 BASIC11.76□□□□□ -0.532e-7■■■■■ 61.1
UPF1Q92900 LEMD2-206ENST00000506578 1684 ntTSL 523.19■■□□□ 1.38e-12■■■■■ 61.1
UPF1Q92900 LEMD2-202ENST00000421671 2323 ntTSL 323.18■■□□□ 1.38e-12■■■■■ 61.1
UPF1Q92900 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.588e-12■■■■■ 61.1
UPF1Q92900 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.538e-12■■■■■ 61.1
UPF1Q92900 LEMD2-209ENST00000511171 4870 ntTSL 212.88□□□□□ -0.358e-12■■■■■ 61.1
UPF1Q92900 SLC19A1-208ENST00000468508 1435 ntTSL 225.48■■□□□ 1.675e-16■■■■■ 61.1
UPF1Q92900 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC25.75■■□□□ 1.715e-12■■■■■ 61
UPF1Q92900 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.92e-22■■■■■ 60.6
UPF1Q92900 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC25.17■■□□□ 1.622e-22■■■■■ 60.6
UPF1Q92900 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC24.96■■□□□ 1.592e-22■■■■■ 60.6
UPF1Q92900 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC22.54■■□□□ 1.22e-22■■■■■ 60.6
UPF1Q92900 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.762e-22■■■■■ 60.6
UPF1Q92900 RANGAP1-201ENST00000356244 3060 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.171e-16■■■■■ 60.6
UPF1Q92900 RANGAP1-202ENST00000405486 3469 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.211e-16■■■■■ 60.6
UPF1Q92900 RANGAP1-207ENST00000455915 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.561e-16■■■■■ 60.6
UPF1Q92900 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.442e-8■■■■■ 60.4
UPF1Q92900 TOMM20-201ENST00000366607 3387 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.611e-19■■■■■ 60.3
UPF1Q92900 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.261e-13■■■■■ 60.1
UPF1Q92900 PEX26-204ENST00000474897 2082 ntTSL 522.09■■□□□ 1.132e-7■■■■■ 60
UPF1Q92900 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.522e-7■■■■■ 60
UPF1Q92900 HDGF-202ENST00000368206 960 ntTSL 5 BASIC18.8■□□□□ 0.64e-35■■■■■ 59.9
UPF1Q92900 CTDSP1-209ENST00000488627 1118 ntTSL 322.35■■□□□ 1.173e-11■■■■■ 59.9
UPF1Q92900 LEMD2-207ENST00000508327 1306 ntTSL 2 BASIC16.71■□□□□ 0.276e-14■■■■■ 59.9
UPF1Q92900 SPOP-205ENST00000503676 1932 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.092e-15■■■■■ 59.8
UPF1Q92900 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC22.38■■□□□ 1.172e-8■■■■■ 59.7
UPF1Q92900 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.862e-8■■■■■ 59.7
UPF1Q92900 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC23.76■■□□□ 1.395e-7■■■■■ 59.6
UPF1Q92900 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.995e-14■■■■■ 59.5
UPF1Q92900 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.283e-10■■■■■ 59.5
UPF1Q92900 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC16.77■□□□□ 0.279e-11■■■■■ 59.5
UPF1Q92900 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC19.15■□□□□ 0.662e-11■■■■■ 59.5
UPF1Q92900 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC34.38■■■■□ 3.095e-22■■■■■ 59.4
UPF1Q92900 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC24.5■■□□□ 1.515e-22■■■■■ 59.4
UPF1Q92900 PYCR1-213ENST00000584848 949 ntTSL 521.8■■□□□ 1.085e-22■■■■■ 59.4
Retrieved 100 of 15,879 protein–RNA pairs in 331.2 ms