RNA–Protein interactions for RNA: ENST00000262768.11

TIMP2-201, Transcript of TIMP metallopeptidase inhibitor 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TIMP2, Length 3,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP2-201ENST00000262768 NISCHQ9Y2I1 1504 aa30.19■■■□□ 2.42
TIMP2-201ENST00000262768 DCAF8L2P0C7V8 631 aa27.74■■■□□ 2.03
TIMP2-201ENST00000262768 SHROOM4Q9ULL8 1493 aa27.28■■□□□ 1.96
TIMP2-201ENST00000262768 SUPT5HO00267 1087 aaKnown RBP26.83■■□□□ 1.89
TIMP2-201ENST00000262768 EHMT2Q96KQ7 1210 aa25.47■■□□□ 1.67
TIMP2-201ENST00000262768 ABCC9O60706 1549 aa25.28■■□□□ 1.64
TIMP2-201ENST00000262768 ZCCHC6Q5VYS8 1495 aaKnown RBP25.23■■□□□ 1.63
TIMP2-201ENST00000262768 FAM9AQ8IZU1 332 aaPredicted RBP25.09■■□□□ 1.61
TIMP2-201ENST00000262768 CCDC180Q9P1Z9 1646 aa25.07■■□□□ 1.6
TIMP2-201ENST00000262768 CHIC1Q5VXU3 224 aa24.94■■□□□ 1.58
TIMP2-201ENST00000262768 LOC105371045A0A1W2PR82 267 aa24.77■■□□□ 1.56
TIMP2-201ENST00000262768 PABPN1Q86U42 306 aaKnown RBP eCLIP24.67■■□□□ 1.54
TIMP2-201ENST00000262768 TRIM41Q8WV44 630 aa24.66■■□□□ 1.54
TIMP2-201ENST00000262768 SCRIBQ14160 1630 aa24.63■■□□□ 1.53
TIMP2-201ENST00000262768 PCGF6Q9BYE7 350 aa24.62■■□□□ 1.53
TIMP2-201ENST00000262768 TTBK1Q5TCY1 1321 aaPredicted RBP24.43■■□□□ 1.5
TIMP2-201ENST00000262768 PPARGC1BQ86YN6 1023 aaKnown RBP24.34■■□□□ 1.49
TIMP2-201ENST00000262768 RANGAP1P46060 587 aaPredicted RBP24.22■■□□□ 1.47
TIMP2-201ENST00000262768 MYO15BQ96JP2 1530 aa24.21■■□□□ 1.47
TIMP2-201ENST00000262768 RSF1Q96T23 1441 aaPredicted RBP24.05■■□□□ 1.44
TIMP2-201ENST00000262768 DCAF1Q9Y4B6 1507 aa24.04■■□□□ 1.44
TIMP2-201ENST00000262768 CECR2Q9BXF3 1484 aa24.02■■□□□ 1.44
TIMP2-201ENST00000262768 UBTFP17480 764 aaKnown RBP23.89■■□□□ 1.42
TIMP2-201ENST00000262768 NACADO15069 1562 aa23.78■■□□□ 1.4
TIMP2-201ENST00000262768 RB1CC1Q8TDY2 1594 aa23.71■■□□□ 1.39
TIMP2-201ENST00000262768 MROH2BQ7Z745 1585 aa23.66■■□□□ 1.38
TIMP2-201ENST00000262768 TRIM26Q12899 539 aaPredicted RBP23.62■■□□□ 1.37
TIMP2-201ENST00000262768 HRCP23327 699 aa23.6■■□□□ 1.37
TIMP2-201ENST00000262768 APLP2Q06481 763 aa23.44■■□□□ 1.34
TIMP2-201ENST00000262768 WIZO95785 1651 aa23.44■■□□□ 1.34
TIMP2-201ENST00000262768 CCER1Q8TC90 406 aaPredicted RBP23.37■■□□□ 1.33
TIMP2-201ENST00000262768 ATP1B4Q9UN42 357 aaPredicted RBP23.34■■□□□ 1.33
TIMP2-201ENST00000262768 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.3■■□□□ 1.32
TIMP2-201ENST00000262768 BAZ1AQ9NRL2 1556 aaPredicted RBP23.26■■□□□ 1.31
TIMP2-201ENST00000262768 CSRNP3Q8WYN3 585 aa23.25■■□□□ 1.31
TIMP2-201ENST00000262768 HNRNPUL2Q1KMD3 747 aaKnown RBP23.2■■□□□ 1.3
TIMP2-201ENST00000262768 ABCC8Q09428 1581 aa23.17■■□□□ 1.3
TIMP2-201ENST00000262768 CCDC88BA6NC98 1476 aa23.15■■□□□ 1.3
TIMP2-201ENST00000262768 ITGAEP38570 1179 aa23.09■■□□□ 1.29
TIMP2-201ENST00000262768 SOGA1O94964 1423 aa23.05■■□□□ 1.28
TIMP2-201ENST00000262768 BAZ1BQ9UIG0 1483 aaKnown RBP23■■□□□ 1.27
TIMP2-201ENST00000262768 SMARCA4P51532 1647 aa22.94■■□□□ 1.26
TIMP2-201ENST00000262768 P3H3Q8IVL6 736 aa22.92■■□□□ 1.26
TIMP2-201ENST00000262768 ZEB1P37275 1124 aaPredicted RBP22.91■■□□□ 1.26
TIMP2-201ENST00000262768 WRNQ14191 1432 aaPredicted RBP eCLIP22.9■■□□□ 1.26
TIMP2-201ENST00000262768 RUSC2Q8N2Y8 1516 aa22.85■■□□□ 1.25
TIMP2-201ENST00000262768 TOP2AP11388 1531 aaKnown RBP22.84■■□□□ 1.25
TIMP2-201ENST00000262768 ATAD2BQ9ULI0 1458 aa22.76■■□□□ 1.23
TIMP2-201ENST00000262768 CEP162Q5TB80 1403 aa22.75■■□□□ 1.23
TIMP2-201ENST00000262768 SMARCA2P51531 1590 aa22.7■■□□□ 1.23
TIMP2-201ENST00000262768 BICRAQ9NZM4 1560 aa22.67■■□□□ 1.22
TIMP2-201ENST00000262768 ARID3CA6NKF2 412 aa22.65■■□□□ 1.22
TIMP2-201ENST00000262768 UNC13AQ9UPW8 1703 aa22.62■■□□□ 1.21
TIMP2-201ENST00000262768 YTHDC1Q96MU7 727 aaKnown RBP22.58■■□□□ 1.21
TIMP2-201ENST00000262768 CLIP1P30622 1438 aa22.56■■□□□ 1.2
TIMP2-201ENST00000262768 FAM50AQ14320 339 aaKnown RBP22.53■■□□□ 1.2
TIMP2-201ENST00000262768 TNIKQ9UKE5 1360 aa22.52■■□□□ 1.2
TIMP2-201ENST00000262768 GOLGA3Q08378 1498 aa22.51■■□□□ 1.19
TIMP2-201ENST00000262768 FBLN2P98095 1184 aa22.46■■□□□ 1.19
TIMP2-201ENST00000262768 DNAJC5BQ9UF47 199 aa22.42■■□□□ 1.18
TIMP2-201ENST00000262768 EEA1Q15075 1411 aa22.41■■□□□ 1.18
TIMP2-201ENST00000262768 CEP164Q9UPV0 1460 aa22.37■■□□□ 1.17
TIMP2-201ENST00000262768 RAPGEF2Q9Y4G8 1499 aa22.37■■□□□ 1.17
TIMP2-201ENST00000262768 DIEXFQ68CQ4 756 aaKnown RBP22.35■■□□□ 1.17
TIMP2-201ENST00000262768 EIF4G1Q04637 1599 aaKnown RBP22.35■■□□□ 1.17
TIMP2-201ENST00000262768 KIF27Q86VH2 1401 aa22.3■■□□□ 1.16
TIMP2-201ENST00000262768 KANK4Q5T7N3 995 aaPredicted RBP22.3■■□□□ 1.16
TIMP2-201ENST00000262768 CUX2O14529 1486 aa22.29■■□□□ 1.16
TIMP2-201ENST00000262768 NEUROD1Q13562 356 aa22.29■■□□□ 1.16
TIMP2-201ENST00000262768 SYNJ1O43426 1573 aa22.29■■□□□ 1.16
TIMP2-201ENST00000262768 CADPSQ9ULU8 1353 aa22.22■■□□□ 1.15
TIMP2-201ENST00000262768 NCAPD3P42695 1498 aa22.18■■□□□ 1.14
TIMP2-201ENST00000262768 TDRD9Q8NDG6 1382 aaKnown RBP22.17■■□□□ 1.14
TIMP2-201ENST00000262768 CARMIL1Q5VZK9 1371 aa22.14■■□□□ 1.13
TIMP2-201ENST00000262768 NESP48681 1621 aa22.1■■□□□ 1.13
TIMP2-201ENST00000262768 VPS8Q8N3P4 1428 aa22.07■■□□□ 1.12
TIMP2-201ENST00000262768 ZNF316A6NFI3 1004 aaPredicted RBP22.05■■□□□ 1.12
TIMP2-201ENST00000262768 CNGB1Q14028 1251 aaPredicted RBP22.04■■□□□ 1.12
TIMP2-201ENST00000262768 CHIC2Q9UKJ5 165 aa22.04■■□□□ 1.12
TIMP2-201ENST00000262768 CENPBP07199 599 aaPredicted RBP22.03■■□□□ 1.12
TIMP2-201ENST00000262768 RAD54L2Q9Y4B4 1467 aa22.02■■□□□ 1.12
TIMP2-201ENST00000262768 TRIM52Q96A61 297 aa22■■□□□ 1.11
TIMP2-201ENST00000262768 FANCD2Q9BXW9 1451 aa21.99■■□□□ 1.11
TIMP2-201ENST00000262768 CC2D2AQ9P2K1 1620 aa21.98■■□□□ 1.11
TIMP2-201ENST00000262768 HIRIP3Q9BW71 556 aaPredicted RBP21.97■■□□□ 1.11
TIMP2-201ENST00000262768 CUX1P39880 1505 aa21.96■■□□□ 1.11
TIMP2-201ENST00000262768 CFTRP13569 1480 aa21.96■■□□□ 1.11
TIMP2-201ENST00000262768 IGF1RP08069 1367 aa21.95■■□□□ 1.1
TIMP2-201ENST00000262768 FGD5Q6ZNL6 1462 aa21.94■■□□□ 1.1
TIMP2-201ENST00000262768 ZNF777Q9ULD5 760 aaPredicted RBP21.93■■□□□ 1.1
TIMP2-201ENST00000262768 PEG3Q9GZU2 1588 aa21.93■■□□□ 1.1
TIMP2-201ENST00000262768 MTUS2Q5JR59 1369 aa21.87■■□□□ 1.09
TIMP2-201ENST00000262768 CHMP7Q8WUX9 453 aaPredicted RBP21.86■■□□□ 1.09
TIMP2-201ENST00000262768 POLR3GLQ9BT43 218 aa21.85■■□□□ 1.09
TIMP2-201ENST00000262768 FHOD3Q2V2M9 1422 aa21.85■■□□□ 1.09
TIMP2-201ENST00000262768 SIN3AQ96ST3 1273 aa21.83■■□□□ 1.09
TIMP2-201ENST00000262768 RRP7BPQ9NSQ0 103 aa21.83■■□□□ 1.09
TIMP2-201ENST00000262768 HMGXB3Q12766 1538 aa21.83■■□□□ 1.08
TIMP2-201ENST00000262768 TOP2BQ02880 1626 aa21.82■■□□□ 1.08
TIMP2-201ENST00000262768 MIER1Q8N108 512 aa21.82■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms