RNA–Protein interactions for RNA: ENST00000589838.5

PRKCSH-209, Transcript of protein kinase C substrate 80K-H, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PRKCSH, Length 1,898 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCSH-209ENST00000589838 NISCHQ9Y2I1 1504 aa41.02■■■■■ 4.16
PRKCSH-209ENST00000589838 CCDC180Q9P1Z9 1646 aa35.33■■■■□ 3.25
PRKCSH-209ENST00000589838 ZCCHC6Q5VYS8 1495 aaKnown RBP34.62■■■■□ 3.13
PRKCSH-209ENST00000589838 SHROOM4Q9ULL8 1493 aa34.18■■■■□ 3.06
PRKCSH-209ENST00000589838 DCAF1Q9Y4B6 1507 aa33.9■■■■□ 3.02
PRKCSH-209ENST00000589838 DCAF8L2P0C7V8 631 aa33.74■■■□□ 2.99
PRKCSH-209ENST00000589838 SUPT5HO00267 1087 aaKnown RBP33.39■■■□□ 2.94
PRKCSH-209ENST00000589838 MYO15BQ96JP2 1530 aa33.15■■■□□ 2.9
PRKCSH-209ENST00000589838 NACADO15069 1562 aa32.71■■■□□ 2.83
PRKCSH-209ENST00000589838 SCRIBQ14160 1630 aa32.66■■■□□ 2.82
PRKCSH-209ENST00000589838 ABCC9O60706 1549 aa32.65■■■□□ 2.82
PRKCSH-209ENST00000589838 CHIC1Q5VXU3 224 aa32.4■■■□□ 2.78
PRKCSH-209ENST00000589838 RB1CC1Q8TDY2 1594 aa32.23■■■□□ 2.75
PRKCSH-209ENST00000589838 RSF1Q96T23 1441 aaPredicted RBP32.19■■■□□ 2.74
PRKCSH-209ENST00000589838 CECR2Q9BXF3 1484 aa31.81■■■□□ 2.68
PRKCSH-209ENST00000589838 MROH2BQ7Z745 1585 aa31.73■■■□□ 2.67
PRKCSH-209ENST00000589838 BAZ1AQ9NRL2 1556 aaPredicted RBP31.62■■■□□ 2.65
PRKCSH-209ENST00000589838 UNC13AQ9UPW8 1703 aa31.62■■■□□ 2.65
PRKCSH-209ENST00000589838 WIZO95785 1651 aa31.54■■■□□ 2.64
PRKCSH-209ENST00000589838 SMARCA4P51532 1647 aa31.35■■■□□ 2.61
PRKCSH-209ENST00000589838 TRIM41Q8WV44 630 aa31.33■■■□□ 2.61
PRKCSH-209ENST00000589838 LOC105371045A0A1W2PR82 267 aa31.22■■■□□ 2.59
PRKCSH-209ENST00000589838 TOP2AP11388 1531 aaKnown RBP31.22■■■□□ 2.59
PRKCSH-209ENST00000589838 BICRAQ9NZM4 1560 aa31.2■■■□□ 2.59
PRKCSH-209ENST00000589838 EIF4G1Q04637 1599 aaKnown RBP31.02■■■□□ 2.56
PRKCSH-209ENST00000589838 PABPN1Q86U42 306 aaKnown RBP eCLIP31.01■■■□□ 2.55
PRKCSH-209ENST00000589838 SMARCA2P51531 1590 aa30.95■■■□□ 2.55
PRKCSH-209ENST00000589838 CCDC88BA6NC98 1476 aa30.94■■■□□ 2.54
PRKCSH-209ENST00000589838 PEG3Q9GZU2 1588 aa30.89■■■□□ 2.54
PRKCSH-209ENST00000589838 PCGF6Q9BYE7 350 aa30.79■■■□□ 2.52
PRKCSH-209ENST00000589838 FAM9AQ8IZU1 332 aaPredicted RBP30.78■■■□□ 2.52
PRKCSH-209ENST00000589838 HRCP23327 699 aa30.64■■■□□ 2.5
PRKCSH-209ENST00000589838 ATAD2BQ9ULI0 1458 aa30.6■■■□□ 2.49
PRKCSH-209ENST00000589838 ABCC8Q09428 1581 aa30.58■■■□□ 2.49
PRKCSH-209ENST00000589838 TRIM26Q12899 539 aaPredicted RBP30.57■■■□□ 2.48
PRKCSH-209ENST00000589838 BAZ1BQ9UIG0 1483 aaKnown RBP30.51■■■□□ 2.48
PRKCSH-209ENST00000589838 EEA1Q15075 1411 aa30.36■■■□□ 2.45
PRKCSH-209ENST00000589838 EHMT2Q96KQ7 1210 aa30.33■■■□□ 2.45
PRKCSH-209ENST00000589838 WRNQ14191 1432 aaPredicted RBP eCLIP30.29■■■□□ 2.44
PRKCSH-209ENST00000589838 HMGXB3Q12766 1538 aa30.21■■■□□ 2.43
PRKCSH-209ENST00000589838 SOGA1O94964 1423 aa30.2■■■□□ 2.43
PRKCSH-209ENST00000589838 NCAPD3P42695 1498 aa30.18■■■□□ 2.42
PRKCSH-209ENST00000589838 CSRNP3Q8WYN3 585 aa30.14■■■□□ 2.42
PRKCSH-209ENST00000589838 SYNJ1O43426 1573 aa30.1■■■□□ 2.41
PRKCSH-209ENST00000589838 TNIKQ9UKE5 1360 aa30.06■■■□□ 2.4
PRKCSH-209ENST00000589838 RUSC2Q8N2Y8 1516 aa30.02■■■□□ 2.4
PRKCSH-209ENST00000589838 GOLGA3Q08378 1498 aa29.98■■■□□ 2.39
PRKCSH-209ENST00000589838 CEP162Q5TB80 1403 aa29.96■■■□□ 2.39
PRKCSH-209ENST00000589838 TOP2BQ02880 1626 aa29.92■■■□□ 2.38
PRKCSH-209ENST00000589838 KIF21BO75037 1637 aa29.89■■■□□ 2.38
PRKCSH-209ENST00000589838 CEP164Q9UPV0 1460 aa29.88■■■□□ 2.37
PRKCSH-209ENST00000589838 ZEB1P37275 1124 aaPredicted RBP29.88■■■□□ 2.37
PRKCSH-209ENST00000589838 UBTFP17480 764 aaKnown RBP29.87■■■□□ 2.37
PRKCSH-209ENST00000589838 BIVM-ERCC5R4GMW8 1640 aa29.87■■■□□ 2.37
PRKCSH-209ENST00000589838 CFTRP13569 1480 aa29.77■■■□□ 2.36
PRKCSH-209ENST00000589838 PPARGC1BQ86YN6 1023 aaKnown RBP29.75■■■□□ 2.35
PRKCSH-209ENST00000589838 PRDM2Q13029 1718 aa29.7■■■□□ 2.34
PRKCSH-209ENST00000589838 CUX1P39880 1505 aa29.61■■■□□ 2.33
PRKCSH-209ENST00000589838 CC2D2AQ9P2K1 1620 aa29.55■■■□□ 2.32
PRKCSH-209ENST00000589838 RAPGEF2Q9Y4G8 1499 aa29.54■■■□□ 2.32
PRKCSH-209ENST00000589838 CLIP1P30622 1438 aa29.54■■■□□ 2.32
PRKCSH-209ENST00000589838 ERICH3Q5RHP9 1530 aa29.52■■■□□ 2.32
PRKCSH-209ENST00000589838 CADPSQ9ULU8 1353 aa29.5■■■□□ 2.31
PRKCSH-209ENST00000589838 KIF27Q86VH2 1401 aa29.47■■■□□ 2.31
PRKCSH-209ENST00000589838 PRXQ9BXM0 1461 aa29.44■■■□□ 2.3
PRKCSH-209ENST00000589838 VPS8Q8N3P4 1428 aa29.39■■■□□ 2.3
PRKCSH-209ENST00000589838 TTBK1Q5TCY1 1321 aaPredicted RBP29.28■■■□□ 2.28
PRKCSH-209ENST00000589838 APLP2Q06481 763 aa29.26■■■□□ 2.27
PRKCSH-209ENST00000589838 CCER1Q8TC90 406 aaPredicted RBP29.23■■■□□ 2.27
PRKCSH-209ENST00000589838 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.19■■■□□ 2.26
PRKCSH-209ENST00000589838 FANCD2Q9BXW9 1451 aa29.18■■■□□ 2.26
PRKCSH-209ENST00000589838 CUX2O14529 1486 aa29.17■■■□□ 2.26
PRKCSH-209ENST00000589838 FGD5Q6ZNL6 1462 aa29.16■■■□□ 2.26
PRKCSH-209ENST00000589838 RANGAP1P46060 587 aaPredicted RBP29.11■■■□□ 2.25
PRKCSH-209ENST00000589838 IGF1RP08069 1367 aa29.09■■■□□ 2.25
PRKCSH-209ENST00000589838 ARAP1Q96P48 1450 aa29.08■■■□□ 2.25
PRKCSH-209ENST00000589838 DNMBPQ6XZF7 1577 aa29.08■■■□□ 2.25
PRKCSH-209ENST00000589838 LAMC3Q9Y6N6 1575 aa29.02■■■□□ 2.24
PRKCSH-209ENST00000589838 CARMIL1Q5VZK9 1371 aa28.99■■■□□ 2.23
PRKCSH-209ENST00000589838 TOPBP1Q92547 1522 aa28.96■■■□□ 2.23
PRKCSH-209ENST00000589838 NESP48681 1621 aa28.93■■■□□ 2.22
PRKCSH-209ENST00000589838 ARHGAP35Q9NRY4 1499 aa28.92■■■□□ 2.22
PRKCSH-209ENST00000589838 ABCA10Q8WWZ4 1543 aa28.92■■■□□ 2.22
PRKCSH-209ENST00000589838 POLA1P09884 1462 aaPredicted RBP28.87■■■□□ 2.21
PRKCSH-209ENST00000589838 HNRNPUL2Q1KMD3 747 aaKnown RBP28.83■■■□□ 2.2
PRKCSH-209ENST00000589838 RAD54L2Q9Y4B4 1467 aa28.81■■■□□ 2.2
PRKCSH-209ENST00000589838 PDS5BQ9NTI5 1447 aa28.8■■■□□ 2.2
PRKCSH-209ENST00000589838 CUL7Q14999 1698 aa28.78■■■□□ 2.2
PRKCSH-209ENST00000589838 URB2Q14146 1524 aaKnown RBP28.74■■■□□ 2.19
PRKCSH-209ENST00000589838 MAP3K1Q13233 1512 aa28.72■■■□□ 2.19
PRKCSH-209ENST00000589838 KANK4Q5T7N3 995 aaPredicted RBP28.72■■■□□ 2.19
PRKCSH-209ENST00000589838 WDR97A6NE52 1622 aa28.72■■■□□ 2.19
PRKCSH-209ENST00000589838 RRBP1Q9P2E9 1410 aaKnown RBP28.66■■■□□ 2.18
PRKCSH-209ENST00000589838 FHAD1B1AJZ9 1412 aa28.65■■■□□ 2.18
PRKCSH-209ENST00000589838 CTTNBP2Q8WZ74 1663 aa28.61■■■□□ 2.17
PRKCSH-209ENST00000589838 TIAM1Q13009 1591 aa28.61■■■□□ 2.17
PRKCSH-209ENST00000589838 EFCAB5A4FU69 1503 aa28.61■■■□□ 2.17
PRKCSH-209ENST00000589838 KIF21AQ7Z4S6 1674 aa28.6■■■□□ 2.17
PRKCSH-209ENST00000589838 ABCA5Q8WWZ7 1642 aa28.59■■■□□ 2.17
PRKCSH-209ENST00000589838 GAPVD1Q14C86 1478 aa28.53■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms