Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
PDGFBP01127 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
PDGFBP01127 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC27.33■■□□□ 1.96
PDGFBP01127 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
PDGFBP01127 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC27.32■■□□□ 1.96
PDGFBP01127 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
PDGFBP01127 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC27.31■■□□□ 1.96
PDGFBP01127 CHML-204ENST00000638121 920 ntTSL 2 BASIC27.29■■□□□ 1.96
PDGFBP01127 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
PDGFBP01127 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC27.28■■□□□ 1.96
PDGFBP01127 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
PDGFBP01127 RNF126P1-201ENST00000567452 1320 ntBASIC27.27■■□□□ 1.96
PDGFBP01127 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC27.27■■□□□ 1.96
PDGFBP01127 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC27.27■■□□□ 1.96
PDGFBP01127 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC27.27■■□□□ 1.96
PDGFBP01127 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
PDGFBP01127 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC27.25■■□□□ 1.95
PDGFBP01127 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC27.24■■□□□ 1.95
PDGFBP01127 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC27.24■■□□□ 1.95
PDGFBP01127 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
PDGFBP01127 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC27.22■■□□□ 1.95
PDGFBP01127 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC27.22■■□□□ 1.95
PDGFBP01127 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC27.21■■□□□ 1.95
PDGFBP01127 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
PDGFBP01127 TPT1-202ENST00000379055 948 ntTSL 2 BASIC27.2■■□□□ 1.94
PDGFBP01127 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC27.2■■□□□ 1.94
PDGFBP01127 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
PDGFBP01127 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC27.18■■□□□ 1.94
PDGFBP01127 AC012354.3-201ENST00000623734 483 ntBASIC27.18■■□□□ 1.94
PDGFBP01127 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
PDGFBP01127 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC27.17■■□□□ 1.94
PDGFBP01127 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC27.16■■□□□ 1.94
PDGFBP01127 CEP120-209ENST00000515110 606 ntTSL 3 BASIC27.16■■□□□ 1.94
PDGFBP01127 NTF6A-201ENST00000591175 560 ntBASIC27.16■■□□□ 1.94
PDGFBP01127 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
PDGFBP01127 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC27.14■■□□□ 1.94
PDGFBP01127 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC27.14■■□□□ 1.94
PDGFBP01127 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC27.13■■□□□ 1.93
PDGFBP01127 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
PDGFBP01127 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
PDGFBP01127 CHST11-202ENST00000546689 756 ntTSL 2 BASIC27.12■■□□□ 1.93
PDGFBP01127 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
PDGFBP01127 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
PDGFBP01127 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC27.11■■□□□ 1.93
PDGFBP01127 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC27.11■■□□□ 1.93
PDGFBP01127 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC27.11■■□□□ 1.93
PDGFBP01127 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
PDGFBP01127 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC27.1■■□□□ 1.93
PDGFBP01127 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
PDGFBP01127 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC27.09■■□□□ 1.93
PDGFBP01127 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC27.09■■□□□ 1.93
PDGFBP01127 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC27.08■■□□□ 1.93
PDGFBP01127 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC27.08■■□□□ 1.93
PDGFBP01127 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
PDGFBP01127 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
PDGFBP01127 EI24-212ENST00000615917 1407 ntTSL 2 BASIC27.07■■□□□ 1.92
PDGFBP01127 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC27.06■■□□□ 1.92
PDGFBP01127 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC27.06■■□□□ 1.92
PDGFBP01127 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC27.06■■□□□ 1.92
PDGFBP01127 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC27.06■■□□□ 1.92
PDGFBP01127 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC27.06■■□□□ 1.92
PDGFBP01127 AL033527.3-201ENST00000566366 1196 ntBASIC27.05■■□□□ 1.92
PDGFBP01127 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC27.04■■□□□ 1.92
PDGFBP01127 AC008813.1-201ENST00000536597 885 ntBASIC27.04■■□□□ 1.92
PDGFBP01127 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
PDGFBP01127 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC27.03■■□□□ 1.92
PDGFBP01127 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
PDGFBP01127 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC27.01■■□□□ 1.91
PDGFBP01127 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC27.01■■□□□ 1.91
PDGFBP01127 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
PDGFBP01127 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
PDGFBP01127 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
PDGFBP01127 AC018358.1-201ENST00000631079 1402 ntBASIC27■■□□□ 1.91
PDGFBP01127 AC022413.1-201ENST00000624602 984 ntBASIC26.99■■□□□ 1.91
PDGFBP01127 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC26.99■■□□□ 1.91
PDGFBP01127 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
PDGFBP01127 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
PDGFBP01127 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC26.98■■□□□ 1.91
PDGFBP01127 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC26.97■■□□□ 1.91
PDGFBP01127 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
PDGFBP01127 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
PDGFBP01127 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
PDGFBP01127 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
PDGFBP01127 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC26.96■■□□□ 1.91
PDGFBP01127 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
PDGFBP01127 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC26.95■■□□□ 1.9
PDGFBP01127 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
PDGFBP01127 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC26.94■■□□□ 1.9
PDGFBP01127 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
PDGFBP01127 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC26.92■■□□□ 1.9
PDGFBP01127 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC26.91■■□□□ 1.9
PDGFBP01127 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
PDGFBP01127 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC26.9■■□□□ 1.9
PDGFBP01127 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC26.9■■□□□ 1.9
PDGFBP01127 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC26.9■■□□□ 1.9
PDGFBP01127 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC26.9■■□□□ 1.9
PDGFBP01127 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC26.9■■□□□ 1.9
PDGFBP01127 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
PDGFBP01127 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
PDGFBP01127 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms