Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 ASNS-203ENST00000394309 2289 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.012e-11■■□□□ 13.4
U2AF1Q01081 PIM1-202ENST00000468243 818 ntTSL 1 (best)14.59□□□□□ -0.071e-10■■□□□ 13.4
U2AF1Q01081 FUBP1-209ENST00000487684 535 ntTSL 214.15□□□□□ -0.142e-7■■□□□ 13.4
U2AF1Q01081 DDX5-214ENST00000580026 1171 ntTSL 213.75□□□□□ -0.216e-8■■□□□ 13.4
U2AF1Q01081 DDX5-216ENST00000581237 592 ntTSL 59.73□□□□□ -0.856e-8■■□□□ 13.4
U2AF1Q01081 IST1-211ENST00000537613 894 ntTSL 214.47□□□□□ -0.094e-8■■□□□ 13.4
U2AF1Q01081 IST1-207ENST00000534994 674 ntTSL 513.83□□□□□ -0.24e-8■■□□□ 13.4
U2AF1Q01081 IST1-220ENST00000541918 908 ntTSL 511.34□□□□□ -0.594e-8■■□□□ 13.4
U2AF1Q01081 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.42□□□□□ -2.184e-8■■□□□ 13.4
U2AF1Q01081 LMO7-201ENST00000321797 5647 ntTSL 5 BASIC11.41□□□□□ -0.586e-8■■□□□ 13.4
U2AF1Q01081 LMO7-218ENST00000526202 4121 ntTSL 2 BASIC10.71□□□□□ -0.696e-8■■□□□ 13.4
U2AF1Q01081 LMO7-207ENST00000465261 5580 ntTSL 1 (best) BASIC10.46□□□□□ -0.736e-8■■□□□ 13.4
U2AF1Q01081 LMO7-205ENST00000377534 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC9.68□□□□□ -0.866e-8■■□□□ 13.4
U2AF1Q01081 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC9.27□□□□□ -0.936e-8■■□□□ 13.4
U2AF1Q01081 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC9.23□□□□□ -0.936e-8■■□□□ 13.4
U2AF1Q01081 PAXBP1-208ENST00000472588 1410 ntTSL 1 (best)29.69■■■□□ 2.342e-6■■□□□ 13.4
U2AF1Q01081 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC28.12■■■□□ 2.092e-6■■□□□ 13.4
U2AF1Q01081 PAXBP1-204ENST00000443785 2920 ntTSL 1 (best)24.48■■□□□ 1.512e-6■■□□□ 13.4
U2AF1Q01081 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.852e-6■■□□□ 13.4
U2AF1Q01081 HNRNPH1-239ENST00000521173 831 ntTSL 514.39□□□□□ -0.112e-9■■□□□ 13.4
U2AF1Q01081 SLC43A3-220ENST00000532278 506 ntTSL 431.57■■■□□ 2.647e-7■■□□□ 13.3
U2AF1Q01081 GRB10-221ENST00000483819 657 ntTSL 229.1■■■□□ 2.257e-7■■□□□ 13.3
U2AF1Q01081 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC27.27■■□□□ 1.967e-7■■□□□ 13.3
U2AF1Q01081 SLC43A3-219ENST00000530316 573 ntTSL 425.96■■□□□ 1.757e-7■■□□□ 13.3
U2AF1Q01081 SLC43A3-224ENST00000533245 589 ntTSL 525.96■■□□□ 1.757e-7■■□□□ 13.3
U2AF1Q01081 SLC43A3-207ENST00000526125 554 ntTSL 525.96■■□□□ 1.757e-7■■□□□ 13.3
U2AF1Q01081 SLC43A3-217ENST00000530005 1434 ntTSL 1 (best)25.92■■□□□ 1.747e-7■■□□□ 13.3
U2AF1Q01081 SLC43A3-213ENST00000529494 560 ntTSL 425.88■■□□□ 1.737e-7■■□□□ 13.3
U2AF1Q01081 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC25.28■■□□□ 1.641e-6■■□□□ 13.3
U2AF1Q01081 BTNL9-206ENST00000511056 332 ntTSL 324.49■■□□□ 1.511e-6■■□□□ 13.3
U2AF1Q01081 SLC43A3-210ENST00000528187 648 ntTSL 522.92■■□□□ 1.267e-7■■□□□ 13.3
U2AF1Q01081 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.227e-7■■□□□ 13.3
U2AF1Q01081 SPC24-207ENST00000592967 833 ntTSL 321.89■■□□□ 1.097e-7■■□□□ 13.3
U2AF1Q01081 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.077e-7■■□□□ 13.3
U2AF1Q01081 BTNL9-203ENST00000491209 2199 ntTSL 221.14■□□□□ 0.981e-6■■□□□ 13.3
U2AF1Q01081 SPC24-203ENST00000585567 633 ntTSL 320.74■□□□□ 0.917e-7■■□□□ 13.3
U2AF1Q01081 SPC24-201ENST00000423327 840 ntTSL 220.74■□□□□ 0.917e-7■■□□□ 13.3
U2AF1Q01081 SPC24-205ENST00000591396 832 ntTSL 519.71■□□□□ 0.757e-7■■□□□ 13.3
U2AF1Q01081 SLC43A3-211ENST00000529112 653 ntTSL 519.54■□□□□ 0.727e-7■■□□□ 13.3
U2AF1Q01081 SLC43A3-209ENST00000528098 1260 ntTSL 219.54■□□□□ 0.727e-7■■□□□ 13.3
U2AF1Q01081 SLC43A3-221ENST00000532795 587 ntTSL 419.34■□□□□ 0.697e-7■■□□□ 13.3
U2AF1Q01081 SLC43A3-223ENST00000533235 581 ntTSL 519.34■□□□□ 0.697e-7■■□□□ 13.3
U2AF1Q01081 SLC43A3-222ENST00000533051 571 ntTSL 218.98■□□□□ 0.637e-7■■□□□ 13.3
U2AF1Q01081 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.537e-7■■□□□ 13.3
U2AF1Q01081 SPC24-204ENST00000586708 378 ntTSL 518.32■□□□□ 0.527e-7■■□□□ 13.3
U2AF1Q01081 SLC43A3-208ENST00000526621 562 ntTSL 418.28■□□□□ 0.527e-7■■□□□ 13.3
U2AF1Q01081 SLC43A3-204ENST00000524863 539 ntTSL 318.28■□□□□ 0.527e-7■■□□□ 13.3
U2AF1Q01081 SLC43A3-216ENST00000529896 494 ntTSL 417.92■□□□□ 0.467e-7■■□□□ 13.3
U2AF1Q01081 SPC24-202ENST00000585486 699 ntTSL 217.86■□□□□ 0.457e-7■■□□□ 13.3
U2AF1Q01081 FANCA-210ENST00000563318 605 ntTSL 516.46■□□□□ 0.237e-7■■□□□ 13.3
U2AF1Q01081 GRB10-220ENST00000483157 540 ntTSL 416.31■□□□□ 0.27e-7■■□□□ 13.3
U2AF1Q01081 GRB10-216ENST00000470992 544 ntTSL 416.17■□□□□ 0.187e-7■■□□□ 13.3
U2AF1Q01081 BTNL9-204ENST00000506782 676 ntTSL 515.8■□□□□ 0.121e-6■■□□□ 13.3
U2AF1Q01081 SLC43A3-202ENST00000395123 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.17e-7■■□□□ 13.3
U2AF1Q01081 SLC43A3-201ENST00000352187 2595 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.117e-7■■□□□ 13.3
U2AF1Q01081 SLC43A3-206ENST00000525474 801 ntTSL 513.48□□□□□ -0.257e-7■■□□□ 13.3
U2AF1Q01081 SLC43A3-215ENST00000529748 397 ntTSL 313.4□□□□□ -0.267e-7■■□□□ 13.3
U2AF1Q01081 CASC3-202ENST00000394114 2792 ntTSL 27.69□□□□□ -1.187e-7■■□□□ 13.3
U2AF1Q01081 GRB10-223ENST00000492265 447 ntTSL 36.1□□□□□ -1.437e-7■■□□□ 13.3
U2AF1Q01081 DDX42-206ENST00000578137 857 ntTSL 35.4□□□□□ -1.547e-10■■□□□ 13.3
U2AF1Q01081 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC18.67■□□□□ 0.589e-8■■□□□ 13.3
U2AF1Q01081 SRRM2-209ENST00000572278 711 ntTSL 212.87□□□□□ -0.352e-10■■□□□ 13.3
U2AF1Q01081 SRRM2-215ENST00000573498 994 ntTSL 38.07□□□□□ -1.129e-8■■□□□ 13.3
U2AF1Q01081 SF1-216ENST00000486867 875 ntTSL 317.6■□□□□ 0.412e-19■■□□□ 13.3
U2AF1Q01081 SF1-218ENST00000489544 584 ntTSL 211.11□□□□□ -0.632e-19■■□□□ 13.3
U2AF1Q01081 ASNS-213ENST00000454046 1947 ntTSL 510.88□□□□□ -0.672e-11■■□□□ 13.3
U2AF1Q01081 APOM-201ENST00000375916 1184 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.321e-7■■□□□ 13.3
U2AF1Q01081 APOM-203ENST00000375920 709 ntTSL 1 (best) BASIC13.05□□□□□ -0.321e-7■■□□□ 13.3
U2AF1Q01081 APOM-202ENST00000375918 922 ntTSL 2 BASIC10.97□□□□□ -0.651e-7■■□□□ 13.3
U2AF1Q01081 ZNF655-210ENST00000422647 573 ntTSL 425.09■■□□□ 1.611e-7■■□□□ 13.3
U2AF1Q01081 ZNF655-214ENST00000427931 567 ntTSL 425.09■■□□□ 1.611e-7■■□□□ 13.3
U2AF1Q01081 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC24.86■■□□□ 1.571e-7■■□□□ 13.3
U2AF1Q01081 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC24.59■■□□□ 1.531e-7■■□□□ 13.3
U2AF1Q01081 ZNF655-206ENST00000416144 1496 ntTSL 324.14■■□□□ 1.461e-7■■□□□ 13.3
U2AF1Q01081 ZNF655-217ENST00000452314 545 ntTSL 223.93■■□□□ 1.421e-7■■□□□ 13.3
U2AF1Q01081 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC23.93■■□□□ 1.421e-7■■□□□ 13.3
U2AF1Q01081 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC23.63■■□□□ 1.371e-7■■□□□ 13.3
U2AF1Q01081 ZNF655-219ENST00000467680 1979 ntTSL 223.22■■□□□ 1.311e-7■■□□□ 13.3
U2AF1Q01081 ZNF655-205ENST00000412636 655 ntTSL 222.23■■□□□ 1.151e-7■■□□□ 13.3
U2AF1Q01081 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC22.23■■□□□ 1.151e-7■■□□□ 13.3
U2AF1Q01081 ZNF655-223ENST00000493947 593 ntTSL 422.23■■□□□ 1.151e-7■■□□□ 13.3
U2AF1Q01081 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC21.97■■□□□ 1.111e-7■■□□□ 13.3
U2AF1Q01081 ZNF655-211ENST00000423973 1441 ntTSL 1 (best)21.31■■□□□ 11e-7■■□□□ 13.3
U2AF1Q01081 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC20.87■□□□□ 0.931e-7■■□□□ 13.3
U2AF1Q01081 ZNF655-220ENST00000488751 924 ntTSL 320.59■□□□□ 0.891e-7■■□□□ 13.3
U2AF1Q01081 ZNF655-208ENST00000422164 793 ntTSL 220.58■□□□□ 0.891e-7■■□□□ 13.3
U2AF1Q01081 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.661e-7■■□□□ 13.3
U2AF1Q01081 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.51e-7■■□□□ 13.3
U2AF1Q01081 ZNF655-209ENST00000422422 782 ntTSL 316.61■□□□□ 0.251e-7■■□□□ 13.3
U2AF1Q01081 ZNF655-204ENST00000394163 4528 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.111e-7■■□□□ 13.3
U2AF1Q01081 ZNF655-213ENST00000425063 4624 ntTSL 3 BASIC10.93□□□□□ -0.661e-7■■□□□ 13.3
U2AF1Q01081 ZNF655-222ENST00000493277 1815 ntAPPRIS ALT2 TSL 2 BASIC10.55□□□□□ -0.721e-7■■□□□ 13.3
U2AF1Q01081 SRRM2-204ENST00000570705 675 ntTSL 320.45■□□□□ 0.861e-15■■□□□ 13.3
U2AF1Q01081 SRRM2-206ENST00000571041 498 ntTSL 420.39■□□□□ 0.851e-15■■□□□ 13.3
U2AF1Q01081 IST1-221ENST00000544564 1500 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.294e-8■■□□□ 13.3
U2AF1Q01081 IST1-219ENST00000541571 1962 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.254e-8■■□□□ 13.3
U2AF1Q01081 IST1-203ENST00000378799 4843 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.224e-8■■□□□ 13.3
U2AF1Q01081 IST1-205ENST00000439924 1841 ntTSL 516.08■□□□□ 0.164e-8■■□□□ 13.3
U2AF1Q01081 IST1-215ENST00000538850 1125 ntTSL 3 BASIC15.01□□□□□ -0.014e-8■■□□□ 13.3
U2AF1Q01081 IST1-201ENST00000329908 2356 ntTSL 1 (best) BASIC14.75□□□□□ -0.054e-8■■□□□ 13.3
Retrieved 100 of 10,096 protein–RNA pairs in 73.7 ms