RNA–Protein interactions for RNA: ENST00000592540.5

SPC24-206, Transcript of SPC24, NDC80 kinetochore complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPC24, Length 2,315 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPC24-206ENST00000592540 NISCHQ9Y2I1 1504 aa35.67■■■■□ 3.3
SPC24-206ENST00000592540 SHROOM4Q9ULL8 1493 aa30.86■■■□□ 2.53
SPC24-206ENST00000592540 SUPT5HO00267 1087 aaKnown RBP30.54■■■□□ 2.48
SPC24-206ENST00000592540 ZCCHC6Q5VYS8 1495 aaKnown RBP30.3■■■□□ 2.44
SPC24-206ENST00000592540 HRCP23327 699 aa30.11■■■□□ 2.41
SPC24-206ENST00000592540 MYO15BQ96JP2 1530 aa30.07■■■□□ 2.4
SPC24-206ENST00000592540 CCDC180Q9P1Z9 1646 aa30.07■■■□□ 2.4
SPC24-206ENST00000592540 CHIC1Q5VXU3 224 aa29.99■■■□□ 2.39
SPC24-206ENST00000592540 PCGF6Q9BYE7 350 aa29.67■■■□□ 2.34
SPC24-206ENST00000592540 DCAF1Q9Y4B6 1507 aa29.41■■■□□ 2.3
SPC24-206ENST00000592540 DCAF8L2P0C7V8 631 aa29.4■■■□□ 2.3
SPC24-206ENST00000592540 PPARGC1BQ86YN6 1023 aaKnown RBP29.38■■■□□ 2.29
SPC24-206ENST00000592540 LOC105371045A0A1W2PR82 267 aa29.14■■■□□ 2.26
SPC24-206ENST00000592540 TRIM26Q12899 539 aaPredicted RBP28.97■■■□□ 2.23
SPC24-206ENST00000592540 ABCC9O60706 1549 aa28.72■■■□□ 2.19
SPC24-206ENST00000592540 ZEB1P37275 1124 aaPredicted RBP28.6■■■□□ 2.17
SPC24-206ENST00000592540 RSF1Q96T23 1441 aaPredicted RBP28.46■■■□□ 2.15
SPC24-206ENST00000592540 TRIM41Q8WV44 630 aa28.39■■■□□ 2.14
SPC24-206ENST00000592540 SCRIBQ14160 1630 aa28.3■■■□□ 2.12
SPC24-206ENST00000592540 RB1CC1Q8TDY2 1594 aa28.3■■■□□ 2.12
SPC24-206ENST00000592540 PELP1Q8IZL8 1130 aaKnown RBP28.27■■■□□ 2.12
SPC24-206ENST00000592540 FAM9AQ8IZU1 332 aaPredicted RBP28.2■■■□□ 2.1
SPC24-206ENST00000592540 SCAF1Q9H7N4 1312 aaKnown RBP28.13■■■□□ 2.09
SPC24-206ENST00000592540 EHMT2Q96KQ7 1210 aa27.95■■■□□ 2.07
SPC24-206ENST00000592540 CECR2Q9BXF3 1484 aa27.8■■■□□ 2.04
SPC24-206ENST00000592540 MROH2BQ7Z745 1585 aa27.78■■■□□ 2.04
SPC24-206ENST00000592540 WIZO95785 1651 aa27.7■■■□□ 2.03
SPC24-206ENST00000592540 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.69■■■□□ 2.02
SPC24-206ENST00000592540 CCER1Q8TC90 406 aaPredicted RBP27.66■■■□□ 2.02
SPC24-206ENST00000592540 ACIN1Q9UKV3 1341 aaKnown RBP27.65■■■□□ 2.02
SPC24-206ENST00000592540 NACADO15069 1562 aa27.63■■■□□ 2.01
SPC24-206ENST00000592540 EIF4G1Q04637 1599 aaKnown RBP27.58■■■□□ 2.01
SPC24-206ENST00000592540 BAZ1AQ9NRL2 1556 aaPredicted RBP27.55■■■□□ 2
SPC24-206ENST00000592540 NEUROD1Q13562 356 aa27.55■■■□□ 2
SPC24-206ENST00000592540 DIEXFQ68CQ4 756 aaKnown RBP27.46■■□□□ 1.99
SPC24-206ENST00000592540 WRNQ14191 1432 aaPredicted RBP eCLIP27.42■■□□□ 1.98
SPC24-206ENST00000592540 CENPBP07199 599 aaPredicted RBP27.38■■□□□ 1.97
SPC24-206ENST00000592540 GTF3C3Q9Y5Q9 886 aa27.34■■□□□ 1.97
SPC24-206ENST00000592540 ABCC8Q09428 1581 aa27.28■■□□□ 1.96
SPC24-206ENST00000592540 CEP162Q5TB80 1403 aa27.28■■□□□ 1.96
SPC24-206ENST00000592540 CCDC88BA6NC98 1476 aa27.27■■□□□ 1.96
SPC24-206ENST00000592540 TOP2AP11388 1531 aaKnown RBP27.23■■□□□ 1.95
SPC24-206ENST00000592540 TTBK1Q5TCY1 1321 aaPredicted RBP27.21■■□□□ 1.95
SPC24-206ENST00000592540 TNIKQ9UKE5 1360 aa27.18■■□□□ 1.94
SPC24-206ENST00000592540 SMARCA2P51531 1590 aa27.12■■□□□ 1.93
SPC24-206ENST00000592540 SOGA1O94964 1423 aa27.12■■□□□ 1.93
SPC24-206ENST00000592540 ZNF316A6NFI3 1004 aaPredicted RBP27.1■■□□□ 1.93
SPC24-206ENST00000592540 SMARCA4P51532 1647 aa27.07■■□□□ 1.92
SPC24-206ENST00000592540 EEA1Q15075 1411 aa27.06■■□□□ 1.92
SPC24-206ENST00000592540 MYT1Q01538 1121 aa27.02■■□□□ 1.92
SPC24-206ENST00000592540 CSRNP3Q8WYN3 585 aa27.01■■□□□ 1.91
SPC24-206ENST00000592540 RUSC2Q8N2Y8 1516 aa26.98■■□□□ 1.91
SPC24-206ENST00000592540 UBTFP17480 764 aaKnown RBP26.96■■□□□ 1.91
SPC24-206ENST00000592540 GOLGA3Q08378 1498 aa26.92■■□□□ 1.9
SPC24-206ENST00000592540 YTHDC1Q96MU7 727 aaKnown RBP26.84■■□□□ 1.89
SPC24-206ENST00000592540 UNC13AQ9UPW8 1703 aa26.8■■□□□ 1.88
SPC24-206ENST00000592540 MIER1Q8N108 512 aa26.79■■□□□ 1.88
SPC24-206ENST00000592540 HNRNPUL2Q1KMD3 747 aaKnown RBP26.73■■□□□ 1.87
SPC24-206ENST00000592540 KIF21BO75037 1637 aa26.72■■□□□ 1.87
SPC24-206ENST00000592540 CEP164Q9UPV0 1460 aa26.71■■□□□ 1.87
SPC24-206ENST00000592540 CLIP1P30622 1438 aa26.64■■□□□ 1.85
SPC24-206ENST00000592540 SYNJ1O43426 1573 aa26.6■■□□□ 1.85
SPC24-206ENST00000592540 VPS8Q8N3P4 1428 aa26.6■■□□□ 1.85
SPC24-206ENST00000592540 BAZ1BQ9UIG0 1483 aaKnown RBP26.53■■□□□ 1.84
SPC24-206ENST00000592540 PEG3Q9GZU2 1588 aa26.5■■□□□ 1.83
SPC24-206ENST00000592540 APLP2Q06481 763 aa26.48■■□□□ 1.83
SPC24-206ENST00000592540 RAPGEF2Q9Y4G8 1499 aa26.44■■□□□ 1.82
SPC24-206ENST00000592540 CLSPNQ9HAW4 1339 aa26.38■■□□□ 1.81
SPC24-206ENST00000592540 BICRAQ9NZM4 1560 aa26.35■■□□□ 1.81
SPC24-206ENST00000592540 DHX57Q6P158 1386 aaKnown RBP26.31■■□□□ 1.8
SPC24-206ENST00000592540 RANGAP1P46060 587 aaPredicted RBP26.27■■□□□ 1.8
SPC24-206ENST00000592540 PABPN1Q86U42 306 aaKnown RBP eCLIP26.27■■□□□ 1.8
SPC24-206ENST00000592540 TOP2BQ02880 1626 aa26.22■■□□□ 1.79
SPC24-206ENST00000592540 SUPT16HQ9Y5B9 1047 aaKnown RBP26.2■■□□□ 1.79
SPC24-206ENST00000592540 ATAD2BQ9ULI0 1458 aa26.19■■□□□ 1.78
SPC24-206ENST00000592540 ERICH3Q5RHP9 1530 aa26.16■■□□□ 1.78
SPC24-206ENST00000592540 ARAP1Q96P48 1450 aa26.16■■□□□ 1.78
SPC24-206ENST00000592540 BIVM-ERCC5R4GMW8 1640 aa26.12■■□□□ 1.77
SPC24-206ENST00000592540 PRXQ9BXM0 1461 aa26.1■■□□□ 1.77
SPC24-206ENST00000592540 KANK4Q5T7N3 995 aaPredicted RBP26.09■■□□□ 1.77
SPC24-206ENST00000592540 RRBP1Q9P2E9 1410 aaKnown RBP26.08■■□□□ 1.77
SPC24-206ENST00000592540 CUX2O14529 1486 aa26.04■■□□□ 1.76
SPC24-206ENST00000592540 TSHZ2Q9NRE2 1034 aa25.94■■□□□ 1.74
SPC24-206ENST00000592540 CCNB3Q8WWL7 1395 aa25.93■■□□□ 1.74
SPC24-206ENST00000592540 ARHGAP35Q9NRY4 1499 aa25.83■■□□□ 1.73
SPC24-206ENST00000592540 CUX1P39880 1505 aa25.82■■□□□ 1.72
SPC24-206ENST00000592540 KIF27Q86VH2 1401 aa25.82■■□□□ 1.72
SPC24-206ENST00000592540 MAPKBP1O60336 1514 aa25.81■■□□□ 1.72
SPC24-206ENST00000592540 KCNH8Q96L42 1107 aa25.81■■□□□ 1.72
SPC24-206ENST00000592540 ITGAEP38570 1179 aa25.79■■□□□ 1.72
SPC24-206ENST00000592540 RAB3GAP2Q9H2M9 1393 aa25.78■■□□□ 1.72
SPC24-206ENST00000592540 ANP32EQ9BTT0 268 aa25.74■■□□□ 1.71
SPC24-206ENST00000592540 TIAM1Q13009 1591 aa25.68■■□□□ 1.7
SPC24-206ENST00000592540 MAP3K1Q13233 1512 aa25.66■■□□□ 1.7
SPC24-206ENST00000592540 SETD5Q9C0A6 1442 aa25.66■■□□□ 1.7
SPC24-206ENST00000592540 WDR97A6NE52 1622 aa25.65■■□□□ 1.7
SPC24-206ENST00000592540 HMGXB3Q12766 1538 aa25.62■■□□□ 1.69
SPC24-206ENST00000592540 DDX10Q13206 875 aaKnown RBP25.61■■□□□ 1.69
SPC24-206ENST00000592540 BCANQ96GW7 911 aa25.61■■□□□ 1.69
SPC24-206ENST00000592540 FKBP8Q14318 412 aa25.6■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms