RNA–Protein interactions for RNA: ENST00000489544.1

SF1-218, Transcript of splicing factor 1, humanhuman

TSL 2

Gene SF1, Length 584 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-218ENST00000489544 NISCHQ9Y2I1 1504 aa19.81■□□□□ 0.76
SF1-218ENST00000489544 CCDC180Q9P1Z9 1646 aa17.45■□□□□ 0.38
SF1-218ENST00000489544 ABCC9O60706 1549 aa17.06■□□□□ 0.32
SF1-218ENST00000489544 DCAF8L2P0C7V8 631 aa16.6■□□□□ 0.25
SF1-218ENST00000489544 ZCCHC6Q5VYS8 1495 aaKnown RBP16.53■□□□□ 0.24
SF1-218ENST00000489544 NACADO15069 1562 aa16.39■□□□□ 0.21
SF1-218ENST00000489544 RB1CC1Q8TDY2 1594 aa16.38■□□□□ 0.21
SF1-218ENST00000489544 DCAF1Q9Y4B6 1507 aa16.32■□□□□ 0.2
SF1-218ENST00000489544 MYO15BQ96JP2 1530 aa16.31■□□□□ 0.2
SF1-218ENST00000489544 SCRIBQ14160 1630 aa16.05■□□□□ 0.16
SF1-218ENST00000489544 PABPN1Q86U42 306 aaKnown RBP eCLIP16.03■□□□□ 0.162e-6■□□□□ 8.9
SF1-218ENST00000489544 UNC13AQ9UPW8 1703 aa16.02■□□□□ 0.16
SF1-218ENST00000489544 AEBP2Q6ZN18 517 aaPredicted RBP15.98■□□□□ 0.15
SF1-218ENST00000489544 BICRAQ9NZM4 1560 aa15.94■□□□□ 0.14
SF1-218ENST00000489544 SHROOM4Q9ULL8 1493 aa15.89■□□□□ 0.13
SF1-218ENST00000489544 DNAJC5BQ9UF47 199 aa15.72■□□□□ 0.11
SF1-218ENST00000489544 EIF4G1Q04637 1599 aaKnown RBP15.49■□□□□ 0.07
SF1-218ENST00000489544 CECR2Q9BXF3 1484 aa15.48■□□□□ 0.07
SF1-218ENST00000489544 CC2D2AQ9P2K1 1620 aa15.39■□□□□ 0.05
SF1-218ENST00000489544 SMARCA4P51532 1647 aa15.32■□□□□ 0.04
SF1-218ENST00000489544 MROH2BQ7Z745 1585 aa15.32■□□□□ 0.04
SF1-218ENST00000489544 BAZ1AQ9NRL2 1556 aaPredicted RBP15.31■□□□□ 0.04
SF1-218ENST00000489544 ATAD2BQ9ULI0 1458 aa15.22■□□□□ 0.03
SF1-218ENST00000489544 RSF1Q96T23 1441 aaPredicted RBP15.19■□□□□ 0.02
SF1-218ENST00000489544 NCAPD3P42695 1498 aa15.16■□□□□ 0.02
SF1-218ENST00000489544 CHIC1Q5VXU3 224 aa15.16■□□□□ 0.02
SF1-218ENST00000489544 SMARCA2P51531 1590 aa15.15■□□□□ 0.02
SF1-218ENST00000489544 WIZO95785 1651 aa15.15■□□□□ 0.02
SF1-218ENST00000489544 PEG3Q9GZU2 1588 aa15.13■□□□□ 0.01
SF1-218ENST00000489544 BAZ1BQ9UIG0 1483 aaKnown RBP15.09■□□□□ 0.01
SF1-218ENST00000489544 HMGXB3Q12766 1538 aa15.07■□□□□ 0
SF1-218ENST00000489544 SUPT5HO00267 1087 aaKnown RBP15.01□□□□□ -0.01
SF1-218ENST00000489544 TOP2AP11388 1531 aaKnown RBP14.95□□□□□ -0.02
SF1-218ENST00000489544 NESP48681 1621 aa14.83□□□□□ -0.04
SF1-218ENST00000489544 CCDC88BA6NC98 1476 aa14.82□□□□□ -0.04
SF1-218ENST00000489544 CADPSQ9ULU8 1353 aa14.75□□□□□ -0.05
SF1-218ENST00000489544 LAMC3Q9Y6N6 1575 aa14.7□□□□□ -0.06
SF1-218ENST00000489544 CFTRP13569 1480 aa14.69□□□□□ -0.06
SF1-218ENST00000489544 ERCC6Q03468 1493 aa14.65□□□□□ -0.06
SF1-218ENST00000489544 PDS5BQ9NTI5 1447 aa14.62□□□□□ -0.07
SF1-218ENST00000489544 KIF21AQ7Z4S6 1674 aa14.59□□□□□ -0.07
SF1-218ENST00000489544 FANCD2Q9BXW9 1451 aa14.59□□□□□ -0.07
SF1-218ENST00000489544 CEP164Q9UPV0 1460 aa14.53□□□□□ -0.08
SF1-218ENST00000489544 PRDM2Q13029 1718 aa14.5□□□□□ -0.09
SF1-218ENST00000489544 THOC2Q8NI27 1593 aaKnown RBP14.49□□□□□ -0.09
SF1-218ENST00000489544 DNAJC5Q9H3Z4 198 aa14.48□□□□□ -0.09
SF1-218ENST00000489544 MRC2Q9UBG0 1479 aa14.48□□□□□ -0.09
SF1-218ENST00000489544 URB2Q14146 1524 aaKnown RBP14.45□□□□□ -0.1
SF1-218ENST00000489544 WDR62O43379 1518 aa14.41□□□□□ -0.1
SF1-218ENST00000489544 CUX2O14529 1486 aa14.38□□□□□ -0.11
SF1-218ENST00000489544 TOPBP1Q92547 1522 aa14.37□□□□□ -0.11
SF1-218ENST00000489544 ABCC8Q09428 1581 aa14.36□□□□□ -0.11
SF1-218ENST00000489544 CUX1P39880 1505 aa14.35□□□□□ -0.11
SF1-218ENST00000489544 DNMBPQ6XZF7 1577 aa14.34□□□□□ -0.11
SF1-218ENST00000489544 WRNQ14191 1432 aaPredicted RBP eCLIP14.3□□□□□ -0.12
SF1-218ENST00000489544 SYNJ1O43426 1573 aa14.27□□□□□ -0.12
SF1-218ENST00000489544 POLA1P09884 1462 aaPredicted RBP14.27□□□□□ -0.12
SF1-218ENST00000489544 FGD5Q6ZNL6 1462 aa14.26□□□□□ -0.13
SF1-218ENST00000489544 RAD54L2Q9Y4B4 1467 aa14.25□□□□□ -0.13
SF1-218ENST00000489544 SOGA1O94964 1423 aa14.22□□□□□ -0.13
SF1-218ENST00000489544 TOP2BQ02880 1626 aa14.22□□□□□ -0.13
SF1-218ENST00000489544 IFT140Q96RY7 1462 aa14.21□□□□□ -0.13
SF1-218ENST00000489544 ZNF608Q9ULD9 1512 aaPredicted RBP14.2□□□□□ -0.14
SF1-218ENST00000489544 BIVM-ERCC5R4GMW8 1640 aa14.2□□□□□ -0.14
SF1-218ENST00000489544 TARBP1Q13395 1621 aaKnown RBP14.19□□□□□ -0.14
SF1-218ENST00000489544 TDRD9Q8NDG6 1382 aaKnown RBP14.16□□□□□ -0.14
SF1-218ENST00000489544 AQRO60306 1485 aaKnown RBP eCLIP14.15□□□□□ -0.141e-8■■■■■ 55.2
SF1-218ENST00000489544 TRIM41Q8WV44 630 aa14.11□□□□□ -0.15
SF1-218ENST00000489544 ABCA10Q8WWZ4 1543 aa14.1□□□□□ -0.15
SF1-218ENST00000489544 EIF4G3O43432 1585 aaKnown RBP14.09□□□□□ -0.15
SF1-218ENST00000489544 WDR97A6NE52 1622 aa14.08□□□□□ -0.15
SF1-218ENST00000489544 GAPVD1Q14C86 1478 aa14.05□□□□□ -0.16
SF1-218ENST00000489544 ABCA5Q8WWZ7 1642 aa14.02□□□□□ -0.16
SF1-218ENST00000489544 GRIN2BQ13224 1484 aa14□□□□□ -0.17
SF1-218ENST00000489544 SNAPC4Q5SXM2 1469 aa13.99□□□□□ -0.17
SF1-218ENST00000489544 RUSC2Q8N2Y8 1516 aa13.99□□□□□ -0.17
SF1-218ENST00000489544 KIF27Q86VH2 1401 aa13.98□□□□□ -0.17
SF1-218ENST00000489544 PBRM1Q86U86 1689 aa13.96□□□□□ -0.17
SF1-218ENST00000489544 FBLN2P98095 1184 aa13.96□□□□□ -0.17
SF1-218ENST00000489544 IGF1RP08069 1367 aa13.94□□□□□ -0.18
SF1-218ENST00000489544 MAGI1Q96QZ7 1491 aaPredicted RBP13.92□□□□□ -0.18
SF1-218ENST00000489544 FAM9AQ8IZU1 332 aaPredicted RBP13.91□□□□□ -0.18
SF1-218ENST00000489544 CHMP7Q8WUX9 453 aaPredicted RBP13.91□□□□□ -0.18
SF1-218ENST00000489544 ERICH3Q5RHP9 1530 aa13.9□□□□□ -0.18
SF1-218ENST00000489544 ADAMTS12P58397 1594 aa13.88□□□□□ -0.19
SF1-218ENST00000489544 SYNJ2O15056 1496 aa13.88□□□□□ -0.19
SF1-218ENST00000489544 CHD1O14646 1710 aa13.88□□□□□ -0.19
SF1-218ENST00000489544 OSCARQ8IYS5 282 aa13.87□□□□□ -0.19
SF1-218ENST00000489544 FHAD1B1AJZ9 1412 aa13.87□□□□□ -0.19
SF1-218ENST00000489544 CARMIL1Q5VZK9 1371 aa13.84□□□□□ -0.19
SF1-218ENST00000489544 GRIN2AQ12879 1464 aa13.83□□□□□ -0.2
SF1-218ENST00000489544 CSRNP3Q8WYN3 585 aa13.81□□□□□ -0.2
SF1-218ENST00000489544 CUL7Q14999 1698 aa13.79□□□□□ -0.2
SF1-218ENST00000489544 EEA1Q15075 1411 aa13.77□□□□□ -0.21
SF1-218ENST00000489544 CEP170Q5SW79 1584 aa13.77□□□□□ -0.21
SF1-218ENST00000489544 NUP160Q12769 1436 aa13.76□□□□□ -0.21
SF1-218ENST00000489544 EHMT2Q96KQ7 1210 aa13.76□□□□□ -0.21
SF1-218ENST00000489544 PRXQ9BXM0 1461 aa13.75□□□□□ -0.21
SF1-218ENST00000489544 RAPGEF2Q9Y4G8 1499 aa13.75□□□□□ -0.21
SF1-218ENST00000489544 CLASP1Q7Z460 1538 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms