Protein–RNA interactions for Protein: Q6P2Q9

PRPF8, Pre-mRNA-processing-splicing factor 8, humanhuman

Known RBP eCLIP

Length 2,335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF8Q6P2Q9 RFFL-205ENST00000415395 1706 ntAPPRIS P1 TSL 5 BASIC9.16□□□□□ -0.942e-6■■□□□ 14.5
PRPF8Q6P2Q9 RFFL-203ENST00000413582 1217 ntTSL 5 BASIC8.7□□□□□ -1.022e-6■■□□□ 14.5
PRPF8Q6P2Q9 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.652e-6■■□□□ 14.5
PRPF8Q6P2Q9 RPS6KB2-210ENST00000530623 569 ntTSL 418.79■□□□□ 0.62e-9■■□□□ 14.5
PRPF8Q6P2Q9 RPS6KB2-204ENST00000524934 466 ntTSL 313.92□□□□□ -0.182e-9■■□□□ 14.5
PRPF8Q6P2Q9 AP3D1-209ENST00000591284 580 ntTSL 516.52■□□□□ 0.231e-7■■□□□ 14.5
PRPF8Q6P2Q9 STRBP-205ENST00000471564 535 ntTSL 56.66□□□□□ -1.347e-11■■□□□ 14.5
PRPF8Q6P2Q9 STRBP-206ENST00000478973 663 ntTSL 56.48□□□□□ -1.377e-11■■□□□ 14.5
PRPF8Q6P2Q9 STRBP-209ENST00000496533 657 ntTSL 35.28□□□□□ -1.567e-11■■□□□ 14.5
PRPF8Q6P2Q9 MTMR4-209ENST00000583656 810 ntTSL 320.18■□□□□ 0.825e-7■■□□□ 14.5
PRPF8Q6P2Q9 POR-222ENST00000493973 1028 ntTSL 214.87□□□□□ -0.033e-18■■□□□ 14.5
PRPF8Q6P2Q9 ARPC1B-217ENST00000481997 945 ntTSL 212.2□□□□□ -0.464e-7■■□□□ 14.5
PRPF8Q6P2Q9 UBALD1-207ENST00000591113 659 ntTSL 519.2■□□□□ 0.662e-13■■□□□ 14.5
PRPF8Q6P2Q9 UBALD1-205ENST00000590891 2641 ntBASIC13.31□□□□□ -0.282e-13■■□□□ 14.5
PRPF8Q6P2Q9 MGAT4B-212ENST00000520134 592 ntTSL 318.99■□□□□ 0.638e-7■■□□□ 14.5
PRPF8Q6P2Q9 PARN-214ENST00000566021 598 ntTSL 317.73■□□□□ 0.432e-17■■□□□ 14.5
PRPF8Q6P2Q9 IST1-218ENST00000541180 635 ntTSL 1 (best)14.39□□□□□ -0.112e-7■■□□□ 14.5
PRPF8Q6P2Q9 PARN-207ENST00000562896 577 ntTSL 48.88□□□□□ -0.992e-17■■□□□ 14.5
PRPF8Q6P2Q9 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.049e-7■■□□□ 14.5
PRPF8Q6P2Q9 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC11.61□□□□□ -0.559e-7■■□□□ 14.5
PRPF8Q6P2Q9 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.689e-7■■□□□ 14.5
PRPF8Q6P2Q9 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC11.06□□□□□ -0.641e-6■■□□□ 14.5
PRPF8Q6P2Q9 TSPAN3-206ENST00000559373 393 ntTSL 317.85■□□□□ 0.455e-29■■□□□ 14.5
PRPF8Q6P2Q9 TSPAN3-208ENST00000560514 638 ntTSL 215.95■□□□□ 0.145e-29■■□□□ 14.5
PRPF8Q6P2Q9 DYNC1LI2-206ENST00000564090 566 ntTSL 414.2□□□□□ -0.142e-11■■□□□ 14.5
PRPF8Q6P2Q9 FGL1-211ENST00000523097 913 ntTSL 24.83□□□□□ -1.644e-7■■□□□ 14.5
PRPF8Q6P2Q9 GIT2-213ENST00000549999 3518 ntTSL 55.49□□□□□ -1.533e-6■■□□□ 14.5
PRPF8Q6P2Q9 UNC13D-210ENST00000587504 1050 ntTSL 511.76□□□□□ -0.533e-7■■□□□ 14.5
PRPF8Q6P2Q9 HDLBP-239ENST00000483086 620 ntTSL 310.46□□□□□ -0.731e-10■■□□□ 14.5
PRPF8Q6P2Q9 PSMF1-204ENST00000381898 642 ntTSL 311.7□□□□□ -0.542e-6■■□□□ 14.5
PRPF8Q6P2Q9 TUBGCP6-207ENST00000491449 4044 ntTSL 59.96□□□□□ -0.829e-7■■□□□ 14.5
PRPF8Q6P2Q9 CEP131-205ENST00000570817 1160 ntAPPRIS ALT2 TSL 1 (best)16.14■□□□□ 0.178e-7■■□□□ 14.5
PRPF8Q6P2Q9 FGFR1-239ENST00000533619 540 ntTSL 414.39□□□□□ -0.114e-10■■□□□ 14.5
PRPF8Q6P2Q9 TRPV1-206ENST00000571088 4105 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.644e-7■■□□□ 14.5
PRPF8Q6P2Q9 TRPV1-201ENST00000310522 2340 ntTSL 1 (best) BASIC10.62□□□□□ -0.714e-7■■□□□ 14.5
PRPF8Q6P2Q9 TRPV1-209ENST00000576351 2525 ntTSL 5 BASIC9.96□□□□□ -0.814e-7■■□□□ 14.5
PRPF8Q6P2Q9 TRPV1-204ENST00000425167 2607 ntTSL 1 (best) BASIC9.54□□□□□ -0.884e-7■■□□□ 14.5
PRPF8Q6P2Q9 TRPV1-208ENST00000574085 2644 ntTSL 29.05□□□□□ -0.964e-7■■□□□ 14.5
PRPF8Q6P2Q9 TRPV1-202ENST00000399756 4068 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.034e-7■■□□□ 14.5
PRPF8Q6P2Q9 TRPV1-203ENST00000399759 4092 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.14e-7■■□□□ 14.5
PRPF8Q6P2Q9 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.13e-6■■□□□ 14.5
PRPF8Q6P2Q9 MAN2C1-220ENST00000564785 4820 ntTSL 511.58□□□□□ -0.566e-10■■□□□ 14.5
PRPF8Q6P2Q9 STIP1-206ENST00000538497 582 ntTSL 24.3□□□□□ -1.725e-7■■□□□ 14.5
PRPF8Q6P2Q9 RHPN2-204ENST00000588388 2378 ntTSL 210□□□□□ -0.812e-7■■□□□ 14.5
PRPF8Q6P2Q9 RHPN2-201ENST00000254260 3500 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.22e-7■■□□□ 14.5
PRPF8Q6P2Q9 KIF1C-202ENST00000572959 590 ntTSL 59.39□□□□□ -0.917e-8■■□□□ 14.5
PRPF8Q6P2Q9 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC4.33□□□□□ -1.724e-12■■□□□ 14.5
PRPF8Q6P2Q9 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC14.16□□□□□ -0.146e-7■■□□□ 14.5
PRPF8Q6P2Q9 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC12.72□□□□□ -0.376e-7■■□□□ 14.5
PRPF8Q6P2Q9 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC12.36□□□□□ -0.436e-7■■□□□ 14.5
PRPF8Q6P2Q9 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.391e-6■■□□□ 14.5
PRPF8Q6P2Q9 SSUH2-204ENST00000415132 1645 ntTSL 516.18■□□□□ 0.181e-6■■□□□ 14.5
PRPF8Q6P2Q9 SSUH2-205ENST00000420394 1634 ntTSL 1 (best)15.77■□□□□ 0.111e-6■■□□□ 14.5
PRPF8Q6P2Q9 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.171e-6■■□□□ 14.5
PRPF8Q6P2Q9 SSUH2-216ENST00000495366 2386 ntTSL 211.75□□□□□ -0.531e-6■■□□□ 14.5
PRPF8Q6P2Q9 SSUH2-203ENST00000413305 1874 ntTSL 1 (best)10.08□□□□□ -0.81e-6■■□□□ 14.5
PRPF8Q6P2Q9 SSUH2-207ENST00000435138 2632 ntTSL 29.93□□□□□ -0.821e-6■■□□□ 14.5
PRPF8Q6P2Q9 SSUH2-201ENST00000317371 2561 ntAPPRIS P3 TSL 2 BASIC9.78□□□□□ -0.841e-6■■□□□ 14.5
PRPF8Q6P2Q9 SSUH2-208ENST00000455157 3219 ntTSL 28.81□□□□□ -11e-6■■□□□ 14.5
PRPF8Q6P2Q9 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.615e-7■■□□□ 14.5
PRPF8Q6P2Q9 HPS1-201ENST00000325103 3703 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.685e-7■■□□□ 14.5
PRPF8Q6P2Q9 HPS1-204ENST00000361490 3678 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.825e-7■■□□□ 14.5
PRPF8Q6P2Q9 HPS1-208ENST00000467246 2791 ntTSL 1 (best)8.86□□□□□ -0.995e-7■■□□□ 14.5
PRPF8Q6P2Q9 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.479e-7■■□□□ 14.5
PRPF8Q6P2Q9 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC11.85□□□□□ -0.519e-7■■□□□ 14.5
PRPF8Q6P2Q9 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.619e-7■■□□□ 14.5
PRPF8Q6P2Q9 SFXN3-204ENST00000466982 2756 ntTSL 28.02□□□□□ -1.133e-7■■□□□ 14.5
PRPF8Q6P2Q9 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.095e-9■■□□□ 14.5
PRPF8Q6P2Q9 MICA-208ENST00000421350 1005 ntTSL 59.81□□□□□ -0.845e-9■■□□□ 14.5
PRPF8Q6P2Q9 ARPC3-205ENST00000475777 837 ntTSL 27.24□□□□□ -1.251e-12■■□□□ 14.5
PRPF8Q6P2Q9 ARPC3-204ENST00000471641 555 ntTSL 32.31□□□□□ -2.041e-12■■□□□ 14.5
PRPF8Q6P2Q9 ARPC3-209ENST00000549408 209 ntTSL 5-0.8□□□□□ -2.544e-7■■□□□ 14.5
PRPF8Q6P2Q9 PHC2-206ENST00000467894 1466 ntTSL 519.26■□□□□ 0.671e-6■■□□□ 14.5
PRPF8Q6P2Q9 PHC2-210ENST00000485928 2548 ntTSL 217.21■□□□□ 0.351e-6■■□□□ 14.5
PRPF8Q6P2Q9 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.31e-6■■□□□ 14.5
PRPF8Q6P2Q9 PHC2-201ENST00000257118 3870 ntAPPRIS P4 TSL 1 (best) BASIC9.5□□□□□ -0.891e-6■■□□□ 14.5
PRPF8Q6P2Q9 PHC2-203ENST00000373422 2799 ntTSL 2 BASIC9.32□□□□□ -0.921e-6■■□□□ 14.5
PRPF8Q6P2Q9 PHC2-204ENST00000431992 3789 ntAPPRIS ALT2 TSL 1 (best) BASIC8.73□□□□□ -1.011e-6■■□□□ 14.5
PRPF8Q6P2Q9 VEGFA-216ENST00000512683 475 ntTSL 1 (best)10.91□□□□□ -0.661e-8■■□□□ 14.5
PRPF8Q6P2Q9 ARHGEF1-210ENST00000594521 826 ntTSL 515.01□□□□□ -0.015e-7■■□□□ 14.5
PRPF8Q6P2Q9 FDPS-208ENST00000470171 746 ntTSL 212.92□□□□□ -0.342e-9■■□□□ 14.5
PRPF8Q6P2Q9 FDPS-216ENST00000491013 912 ntTSL 512.6□□□□□ -0.392e-9■■□□□ 14.5
PRPF8Q6P2Q9 HNRNPL-214ENST00000601813 593 ntTSL 511.53□□□□□ -0.564e-9■■□□□ 14.5
PRPF8Q6P2Q9 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC15.75■□□□□ 0.113e-7■■□□□ 14.5
PRPF8Q6P2Q9 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.073e-7■■□□□ 14.5
PRPF8Q6P2Q9 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.013e-7■■□□□ 14.5
PRPF8Q6P2Q9 STXBP2-211ENST00000597068 1785 ntTSL 1 (best)12.66□□□□□ -0.383e-7■■□□□ 14.5
PRPF8Q6P2Q9 LRRC8A-203ENST00000372600 4355 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.52e-6■■□□□ 14.5
PRPF8Q6P2Q9 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.545e-7■■□□□ 14.5
PRPF8Q6P2Q9 LRRC8A-201ENST00000259324 4619 ntAPPRIS P1 TSL 2 BASIC10.67□□□□□ -0.72e-6■■□□□ 14.5
PRPF8Q6P2Q9 LRRC8A-202ENST00000372599 4161 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.752e-6■■□□□ 14.5
PRPF8Q6P2Q9 VPS25-203ENST00000589520 639 ntTSL 37.94□□□□□ -1.145e-7■■□□□ 14.5
PRPF8Q6P2Q9 VPS25-205ENST00000590339 668 ntTSL 27.42□□□□□ -1.225e-7■■□□□ 14.5
PRPF8Q6P2Q9 FNIP2-204ENST00000505130 473 ntTSL 33.19□□□□□ -1.92e-9■■□□□ 14.5
PRPF8Q6P2Q9 CFB-272ENST00000452035 1866 ntTSL 212.44□□□□□ -0.424e-10■■□□□ 14.5
PRPF8Q6P2Q9 RPL13-203ENST00000399461 879 ntTSL 219.03■□□□□ 0.643e-12■■□□□ 14.5
PRPF8Q6P2Q9 AATK-202ENST00000374792 4938 ntTSL 215.94■□□□□ 0.141e-6■■□□□ 14.5
PRPF8Q6P2Q9 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC13.89□□□□□ -0.191e-6■■□□□ 14.5
PRPF8Q6P2Q9 GABBR1-210ENST00000476670 487 ntTSL 418.06■□□□□ 0.483e-7■■□□□ 14.4
PRPF8Q6P2Q9 ZSWIM8-207ENST00000451629 313 ntTSL 37.19□□□□□ -1.262e-8■■□□□ 14.4
Retrieved 100 of 73,762 protein–RNA pairs in 1495.3 ms