RNA–Protein interactions for RNA: ENST00000466982.1

SFXN3-204, Transcript of sideroflexin 3, humanhuman

TSL 2

Gene SFXN3, Length 2,756 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFXN3-204ENST00000466982 NISCHQ9Y2I1 1504 aa20.78■□□□□ 0.92
SFXN3-204ENST00000466982 PELP1Q8IZL8 1130 aaKnown RBP19.32■□□□□ 0.68
SFXN3-204ENST00000466982 MYT1Q01538 1121 aa18.93■□□□□ 0.62
SFXN3-204ENST00000466982 HRCP23327 699 aa18.7■□□□□ 0.58
SFXN3-204ENST00000466982 PPARGC1BQ86YN6 1023 aaKnown RBP18.47■□□□□ 0.55
SFXN3-204ENST00000466982 PCGF6Q9BYE7 350 aa18.34■□□□□ 0.53
SFXN3-204ENST00000466982 SHROOM4Q9ULL8 1493 aa18.32■□□□□ 0.52
SFXN3-204ENST00000466982 SUPT5HO00267 1087 aaKnown RBP18.29■□□□□ 0.52
SFXN3-204ENST00000466982 MYO15BQ96JP2 1530 aa18.17■□□□□ 0.5
SFXN3-204ENST00000466982 TTBK1Q5TCY1 1321 aaPredicted RBP18.14■□□□□ 0.5
SFXN3-204ENST00000466982 CCDC180Q9P1Z9 1646 aa18.13■□□□□ 0.49
SFXN3-204ENST00000466982 CHIC1Q5VXU3 224 aa17.98■□□□□ 0.47
SFXN3-204ENST00000466982 SCAF1Q9H7N4 1312 aaKnown RBP17.84■□□□□ 0.45
SFXN3-204ENST00000466982 LOC105371045A0A1W2PR82 267 aa17.68■□□□□ 0.42
SFXN3-204ENST00000466982 PRKCSHP14314 528 aaPredicted RBP17.65■□□□□ 0.42
SFXN3-204ENST00000466982 DCAF1Q9Y4B6 1507 aa17.64■□□□□ 0.41
SFXN3-204ENST00000466982 TRIM26Q12899 539 aaPredicted RBP17.59■□□□□ 0.41
SFXN3-204ENST00000466982 ABCC9O60706 1549 aa17.54■□□□□ 0.4
SFXN3-204ENST00000466982 DCAF8L2P0C7V8 631 aa17.48■□□□□ 0.39
SFXN3-204ENST00000466982 BCL11AQ9H165 835 aa17.45■□□□□ 0.38
SFXN3-204ENST00000466982 ZEB1P37275 1124 aaPredicted RBP17.4■□□□□ 0.38
SFXN3-204ENST00000466982 ZCCHC6Q5VYS8 1495 aaKnown RBP17.38■□□□□ 0.37
SFXN3-204ENST00000466982 NEUROD1Q13562 356 aa17.3■□□□□ 0.36
SFXN3-204ENST00000466982 ACIN1Q9UKV3 1341 aaKnown RBP17.28■□□□□ 0.36
SFXN3-204ENST00000466982 ERICH6Q7L0X2 663 aa17.28■□□□□ 0.36
SFXN3-204ENST00000466982 FAM9AQ8IZU1 332 aaPredicted RBP17.26■□□□□ 0.35
SFXN3-204ENST00000466982 APLP2Q06481 763 aa17.21■□□□□ 0.35
SFXN3-204ENST00000466982 GTF3C3Q9Y5Q9 886 aa17.21■□□□□ 0.35
SFXN3-204ENST00000466982 CENPBP07199 599 aaPredicted RBP17.09■□□□□ 0.33
SFXN3-204ENST00000466982 NACADO15069 1562 aa16.99■□□□□ 0.31
SFXN3-204ENST00000466982 EHMT2Q96KQ7 1210 aa16.98■□□□□ 0.31
SFXN3-204ENST00000466982 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.96■□□□□ 0.31
SFXN3-204ENST00000466982 DIEXFQ68CQ4 756 aaKnown RBP16.94■□□□□ 0.3
SFXN3-204ENST00000466982 RB1CC1Q8TDY2 1594 aa16.93■□□□□ 0.3
SFXN3-204ENST00000466982 CCER1Q8TC90 406 aaPredicted RBP16.86■□□□□ 0.29
SFXN3-204ENST00000466982 TRIM41Q8WV44 630 aa16.81■□□□□ 0.28
SFXN3-204ENST00000466982 SCRIBQ14160 1630 aa16.78■□□□□ 0.28
SFXN3-204ENST00000466982 YTHDC1Q96MU7 727 aaKnown RBP16.77■□□□□ 0.28
SFXN3-204ENST00000466982 ANP32EQ9BTT0 268 aa16.75■□□□□ 0.27
SFXN3-204ENST00000466982 SLC24A1O60721 1099 aa16.67■□□□□ 0.26
SFXN3-204ENST00000466982 PABPN1Q86U42 306 aaKnown RBP eCLIP16.57■□□□□ 0.24
SFXN3-204ENST00000466982 CSRNP3Q8WYN3 585 aa16.56■□□□□ 0.24
SFXN3-204ENST00000466982 ZNF316A6NFI3 1004 aaPredicted RBP16.54■□□□□ 0.24
SFXN3-204ENST00000466982 MIER1Q8N108 512 aa16.54■□□□□ 0.24
SFXN3-204ENST00000466982 UNC13AQ9UPW8 1703 aa16.54■□□□□ 0.24
SFXN3-204ENST00000466982 RSF1Q96T23 1441 aaPredicted RBP16.45■□□□□ 0.22
SFXN3-204ENST00000466982 BICRAQ9NZM4 1560 aa16.41■□□□□ 0.22
SFXN3-204ENST00000466982 SUPT16HQ9Y5B9 1047 aaKnown RBP16.32■□□□□ 0.2
SFXN3-204ENST00000466982 TSHZ2Q9NRE2 1034 aa16.29■□□□□ 0.2
SFXN3-204ENST00000466982 CECR2Q9BXF3 1484 aa16.23■□□□□ 0.19
SFXN3-204ENST00000466982 ANO8Q9HCE9 1232 aaPredicted RBP16.21■□□□□ 0.19
SFXN3-204ENST00000466982 DAXXQ9UER7 740 aaPredicted RBP16.19■□□□□ 0.18
SFXN3-204ENST00000466982 EIF5BO60841 1220 aaKnown RBP16.18■□□□□ 0.18
SFXN3-204ENST00000466982 UBE2Q2Q8WVN8 375 aa16.16■□□□□ 0.18
SFXN3-204ENST00000466982 HNRNPUL2Q1KMD3 747 aaKnown RBP16.15■□□□□ 0.18
SFXN3-204ENST00000466982 WRNQ14191 1432 aaPredicted RBP eCLIP16.14■□□□□ 0.17
SFXN3-204ENST00000466982 CEP162Q5TB80 1403 aa16.1■□□□□ 0.17
SFXN3-204ENST00000466982 MROH2BQ7Z745 1585 aa16.08■□□□□ 0.16
SFXN3-204ENST00000466982 CLSPNQ9HAW4 1339 aa16.05■□□□□ 0.16
SFXN3-204ENST00000466982 BAZ1AQ9NRL2 1556 aaPredicted RBP16.05■□□□□ 0.16
SFXN3-204ENST00000466982 BCANQ96GW7 911 aa16.04■□□□□ 0.16
SFXN3-204ENST00000466982 SMARCA4P51532 1647 aa16.01■□□□□ 0.15
SFXN3-204ENST00000466982 UBTFP17480 764 aaKnown RBP15.96■□□□□ 0.15
SFXN3-204ENST00000466982 EIF4G1Q04637 1599 aaKnown RBP15.96■□□□□ 0.15
SFXN3-204ENST00000466982 KCNH8Q96L42 1107 aa15.94■□□□□ 0.14
SFXN3-204ENST00000466982 CCDC88BA6NC98 1476 aa15.94■□□□□ 0.14
SFXN3-204ENST00000466982 TNIKQ9UKE5 1360 aa15.93■□□□□ 0.14
SFXN3-204ENST00000466982 WIZO95785 1651 aa15.93■□□□□ 0.14
SFXN3-204ENST00000466982 SOGA1O94964 1423 aa15.92■□□□□ 0.14
SFXN3-204ENST00000466982 ABCC8Q09428 1581 aa15.91■□□□□ 0.14
SFXN3-204ENST00000466982 SALL2Q9Y467 1007 aaPredicted RBP15.89■□□□□ 0.13
SFXN3-204ENST00000466982 RBM19Q9Y4C8 960 aaKnown RBP15.89■□□□□ 0.13
SFXN3-204ENST00000466982 FKBP8Q14318 412 aa15.88■□□□□ 0.13
SFXN3-204ENST00000466982 RUSC2Q8N2Y8 1516 aa15.85■□□□□ 0.13
SFXN3-204ENST00000466982 ATAD2BQ9ULI0 1458 aa15.83■□□□□ 0.13
SFXN3-204ENST00000466982 PLEKHG5O94827 1062 aa15.83■□□□□ 0.13
SFXN3-204ENST00000466982 MSH5O43196 834 aa15.81■□□□□ 0.12
SFXN3-204ENST00000466982 ITGAEP38570 1179 aa15.81■□□□□ 0.12
SFXN3-204ENST00000466982 ERICH6BQ5W0A0 696 aa15.8■□□□□ 0.12
SFXN3-204ENST00000466982 CC2D2AQ9P2K1 1620 aa15.8■□□□□ 0.12
SFXN3-204ENST00000466982 SMARCA2P51531 1590 aa15.79■□□□□ 0.12
SFXN3-204ENST00000466982 CCDC136Q96JN2 1154 aa15.78■□□□□ 0.12
SFXN3-204ENST00000466982 MYT1LQ9UL68 1186 aa15.77■□□□□ 0.11
SFXN3-204ENST00000466982 PEG3Q9GZU2 1588 aa15.76■□□□□ 0.11
SFXN3-204ENST00000466982 PKNOX2Q96KN3 472 aa15.75■□□□□ 0.11
SFXN3-204ENST00000466982 BAZ1BQ9UIG0 1483 aaKnown RBP15.75■□□□□ 0.11
SFXN3-204ENST00000466982 DHX57Q6P158 1386 aaKnown RBP15.74■□□□□ 0.11
SFXN3-204ENST00000466982 DNAJC5BQ9UF47 199 aa15.73■□□□□ 0.11
SFXN3-204ENST00000466982 TOP2AP11388 1531 aaKnown RBP15.72■□□□□ 0.11
SFXN3-204ENST00000466982 NCAPD3P42695 1498 aa15.71■□□□□ 0.11
SFXN3-204ENST00000466982 RANGAP1P46060 587 aaPredicted RBP15.7■□□□□ 0.1
SFXN3-204ENST00000466982 GOLGA3Q08378 1498 aa15.69■□□□□ 0.1
SFXN3-204ENST00000466982 DEKP35659 375 aaKnown RBP15.68■□□□□ 0.1
SFXN3-204ENST00000466982 PODXL2Q9NZ53 605 aa15.68■□□□□ 0.1
SFXN3-204ENST00000466982 CLIP1P30622 1438 aa15.65■□□□□ 0.1
SFXN3-204ENST00000466982 NEFLP07196 543 aa15.63■□□□□ 0.09
SFXN3-204ENST00000466982 HMGXB3Q12766 1538 aa15.63■□□□□ 0.09
SFXN3-204ENST00000466982 TRIM52Q96A61 297 aa15.63■□□□□ 0.09
SFXN3-204ENST00000466982 EEA1Q15075 1411 aa15.62■□□□□ 0.09
SFXN3-204ENST00000466982 DDX10Q13206 875 aaKnown RBP15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms