RNA–Protein interactions for RNA: ENST00000253794.6

VPS25-201, Transcript of vacuolar protein sorting 25 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS25, Length 1,101 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-201ENST00000253794 NISCHQ9Y2I1 1504 aa33.74■■■□□ 2.99
VPS25-201ENST00000253794 CCDC180Q9P1Z9 1646 aa29.85■■■□□ 2.37
VPS25-201ENST00000253794 ABCC9O60706 1549 aa28.68■■■□□ 2.18
VPS25-201ENST00000253794 ZCCHC6Q5VYS8 1495 aaKnown RBP28.22■■■□□ 2.11
VPS25-201ENST00000253794 MYO15BQ96JP2 1530 aa28.02■■■□□ 2.08
VPS25-201ENST00000253794 DCAF1Q9Y4B6 1507 aa28.02■■■□□ 2.08
VPS25-201ENST00000253794 NACADO15069 1562 aa27.95■■■□□ 2.07
VPS25-201ENST00000253794 RB1CC1Q8TDY2 1594 aa27.86■■■□□ 2.05
VPS25-201ENST00000253794 DCAF8L2P0C7V8 631 aa27.78■■■□□ 2.04
VPS25-201ENST00000253794 UNC13AQ9UPW8 1703 aa27.18■■□□□ 1.94
VPS25-201ENST00000253794 SCRIBQ14160 1630 aa27.15■■□□□ 1.94
VPS25-201ENST00000253794 BICRAQ9NZM4 1560 aa27.01■■□□□ 1.92
VPS25-201ENST00000253794 SHROOM4Q9ULL8 1493 aa26.87■■□□□ 1.89
VPS25-201ENST00000253794 PABPN1Q86U42 306 aaKnown RBP eCLIP26.82■■□□□ 1.88
VPS25-201ENST00000253794 EIF4G1Q04637 1599 aaKnown RBP26.25■■□□□ 1.79
VPS25-201ENST00000253794 CECR2Q9BXF3 1484 aa26.19■■□□□ 1.78
VPS25-201ENST00000253794 BAZ1AQ9NRL2 1556 aaPredicted RBP26.12■■□□□ 1.77
VPS25-201ENST00000253794 SMARCA4P51532 1647 aa26.08■■□□□ 1.77
VPS25-201ENST00000253794 CC2D2AQ9P2K1 1620 aa26.01■■□□□ 1.75
VPS25-201ENST00000253794 MROH2BQ7Z745 1585 aa25.97■■□□□ 1.75
VPS25-201ENST00000253794 DNAJC5BQ9UF47 199 aa25.96■■□□□ 1.75
VPS25-201ENST00000253794 PEG3Q9GZU2 1588 aa25.9■■□□□ 1.74
VPS25-201ENST00000253794 RSF1Q96T23 1441 aaPredicted RBP25.85■■□□□ 1.73
VPS25-201ENST00000253794 ATAD2BQ9ULI0 1458 aa25.85■■□□□ 1.73
VPS25-201ENST00000253794 SMARCA2P51531 1590 aa25.84■■□□□ 1.73
VPS25-201ENST00000253794 NCAPD3P42695 1498 aa25.8■■□□□ 1.72
VPS25-201ENST00000253794 HMGXB3Q12766 1538 aa25.73■■□□□ 1.71
VPS25-201ENST00000253794 WIZO95785 1651 aa25.68■■□□□ 1.7
VPS25-201ENST00000253794 BAZ1BQ9UIG0 1483 aaKnown RBP25.62■■□□□ 1.69
VPS25-201ENST00000253794 TOP2AP11388 1531 aaKnown RBP25.5■■□□□ 1.67
VPS25-201ENST00000253794 SUPT5HO00267 1087 aaKnown RBP25.32■■□□□ 1.64
VPS25-201ENST00000253794 CCDC88BA6NC98 1476 aa25.16■■□□□ 1.62
VPS25-201ENST00000253794 CADPSQ9ULU8 1353 aa25.04■■□□□ 1.6
VPS25-201ENST00000253794 LAMC3Q9Y6N6 1575 aa25.03■■□□□ 1.6
VPS25-201ENST00000253794 CFTRP13569 1480 aa25.01■■□□□ 1.59
VPS25-201ENST00000253794 NESP48681 1621 aa24.95■■□□□ 1.58
VPS25-201ENST00000253794 PDS5BQ9NTI5 1447 aa24.83■■□□□ 1.57
VPS25-201ENST00000253794 PRDM2Q13029 1718 aa24.81■■□□□ 1.56
VPS25-201ENST00000253794 FANCD2Q9BXW9 1451 aa24.72■■□□□ 1.55
VPS25-201ENST00000253794 ERCC6Q03468 1493 aa24.69■■□□□ 1.54
VPS25-201ENST00000253794 KIF21AQ7Z4S6 1674 aa24.68■■□□□ 1.54
VPS25-201ENST00000253794 CEP164Q9UPV0 1460 aa24.65■■□□□ 1.54
VPS25-201ENST00000253794 THOC2Q8NI27 1593 aaKnown RBP24.56■■□□□ 1.52
VPS25-201ENST00000253794 MRC2Q9UBG0 1479 aa24.55■■□□□ 1.52
VPS25-201ENST00000253794 WDR62O43379 1518 aa24.49■■□□□ 1.51
VPS25-201ENST00000253794 URB2Q14146 1524 aaKnown RBP24.46■■□□□ 1.51
VPS25-201ENST00000253794 ABCC8Q09428 1581 aa24.44■■□□□ 1.5
VPS25-201ENST00000253794 DNMBPQ6XZF7 1577 aa24.41■■□□□ 1.5
VPS25-201ENST00000253794 CUX2O14529 1486 aa24.38■■□□□ 1.49
VPS25-201ENST00000253794 TOPBP1Q92547 1522 aa24.38■■□□□ 1.49
VPS25-201ENST00000253794 CUX1P39880 1505 aa24.35■■□□□ 1.49
VPS25-201ENST00000253794 WRNQ14191 1432 aaPredicted RBP eCLIP24.34■■□□□ 1.49
VPS25-201ENST00000253794 TOP2BQ02880 1626 aa24.28■■□□□ 1.48
VPS25-201ENST00000253794 BIVM-ERCC5R4GMW8 1640 aa24.27■■□□□ 1.48
VPS25-201ENST00000253794 SYNJ1O43426 1573 aa24.25■■□□□ 1.47
VPS25-201ENST00000253794 POLA1P09884 1462 aaPredicted RBP24.21■■□□□ 1.47
VPS25-201ENST00000253794 FGD5Q6ZNL6 1462 aa24.19■■□□□ 1.46
VPS25-201ENST00000253794 IFT140Q96RY7 1462 aa24.15■■□□□ 1.46
VPS25-201ENST00000253794 TARBP1Q13395 1621 aaKnown RBP24.11■■□□□ 1.45
VPS25-201ENST00000253794 SOGA1O94964 1423 aa24.08■■□□□ 1.44
VPS25-201ENST00000253794 RAD54L2Q9Y4B4 1467 aa24.05■■□□□ 1.44
VPS25-201ENST00000253794 ABCA10Q8WWZ4 1543 aa24.03■■□□□ 1.44
VPS25-201ENST00000253794 WDR97A6NE52 1622 aa24.01■■□□□ 1.43
VPS25-201ENST00000253794 CHIC1Q5VXU3 224 aa23.97■■□□□ 1.43
VPS25-201ENST00000253794 TRIM41Q8WV44 630 aa23.96■■□□□ 1.43
VPS25-201ENST00000253794 ZNF608Q9ULD9 1512 aaPredicted RBP23.95■■□□□ 1.43
VPS25-201ENST00000253794 EIF4G3O43432 1585 aaKnown RBP23.9■■□□□ 1.42
VPS25-201ENST00000253794 ABCA5Q8WWZ7 1642 aa23.89■■□□□ 1.42
VPS25-201ENST00000253794 TDRD9Q8NDG6 1382 aaKnown RBP23.87■■□□□ 1.41
VPS25-201ENST00000253794 AQRO60306 1485 aaKnown RBP eCLIP23.86■■□□□ 1.414e-9■■■■□ 22.9
VPS25-201ENST00000253794 GAPVD1Q14C86 1478 aa23.83■■□□□ 1.41
VPS25-201ENST00000253794 KIF27Q86VH2 1401 aa23.8■■□□□ 1.4
VPS25-201ENST00000253794 GRIN2BQ13224 1484 aa23.79■■□□□ 1.4
VPS25-201ENST00000253794 ERICH3Q5RHP9 1530 aa23.75■■□□□ 1.39
VPS25-201ENST00000253794 PBRM1Q86U86 1689 aa23.73■■□□□ 1.39
VPS25-201ENST00000253794 MAGI1Q96QZ7 1491 aaPredicted RBP23.7■■□□□ 1.38
VPS25-201ENST00000253794 SNAPC4Q5SXM2 1469 aa23.67■■□□□ 1.38
VPS25-201ENST00000253794 EEA1Q15075 1411 aa23.67■■□□□ 1.38
VPS25-201ENST00000253794 IGF1RP08069 1367 aa23.66■■□□□ 1.38
VPS25-201ENST00000253794 RUSC2Q8N2Y8 1516 aa23.65■■□□□ 1.38
VPS25-201ENST00000253794 ADAMTS12P58397 1594 aa23.61■■□□□ 1.37
VPS25-201ENST00000253794 SYNJ2O15056 1496 aa23.6■■□□□ 1.37
VPS25-201ENST00000253794 FHAD1B1AJZ9 1412 aa23.59■■□□□ 1.37
VPS25-201ENST00000253794 CUL7Q14999 1698 aa23.59■■□□□ 1.37
VPS25-201ENST00000253794 CARMIL1Q5VZK9 1371 aa23.51■■□□□ 1.35
VPS25-201ENST00000253794 PRXQ9BXM0 1461 aa23.49■■□□□ 1.35
VPS25-201ENST00000253794 CSRNP3Q8WYN3 585 aa23.48■■□□□ 1.35
VPS25-201ENST00000253794 GRIN2AQ12879 1464 aa23.48■■□□□ 1.35
VPS25-201ENST00000253794 CHD1O14646 1710 aa23.47■■□□□ 1.35
VPS25-201ENST00000253794 CHMP7Q8WUX9 453 aaPredicted RBP23.46■■□□□ 1.35
VPS25-201ENST00000253794 RAPGEF2Q9Y4G8 1499 aa23.43■■□□□ 1.34
VPS25-201ENST00000253794 NUP160Q12769 1436 aa23.4■■□□□ 1.34
VPS25-201ENST00000253794 FBLN2P98095 1184 aa23.38■■□□□ 1.33
VPS25-201ENST00000253794 KIF21BO75037 1637 aa23.37■■□□□ 1.33
VPS25-201ENST00000253794 OSCARQ8IYS5 282 aa23.36■■□□□ 1.33
VPS25-201ENST00000253794 FAM9AQ8IZU1 332 aaPredicted RBP23.35■■□□□ 1.33
VPS25-201ENST00000253794 CEP170Q5SW79 1584 aa23.33■■□□□ 1.33
VPS25-201ENST00000253794 CLASP1Q7Z460 1538 aa23.32■■□□□ 1.32
VPS25-201ENST00000253794 KIAA0586Q9BVV6 1533 aa23.26■■□□□ 1.31
VPS25-201ENST00000253794 GOLGA3Q08378 1498 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms