RNA–Protein interactions for RNA: ENST00000590339.5

VPS25-205, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 668 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-205ENST00000590339 NISCHQ9Y2I1 1504 aa21.66■■□□□ 1.06
VPS25-205ENST00000590339 ABCC9O60706 1549 aa19.25■□□□□ 0.67
VPS25-205ENST00000590339 CCDC180Q9P1Z9 1646 aa19.18■□□□□ 0.66
VPS25-205ENST00000590339 DCAF8L2P0C7V8 631 aa18.51■□□□□ 0.55
VPS25-205ENST00000590339 RB1CC1Q8TDY2 1594 aa18.28■□□□□ 0.52
VPS25-205ENST00000590339 NACADO15069 1562 aa18.2■□□□□ 0.5
VPS25-205ENST00000590339 PABPN1Q86U42 306 aaKnown RBP eCLIP18.08■□□□□ 0.48
VPS25-205ENST00000590339 ZCCHC6Q5VYS8 1495 aaKnown RBP17.98■□□□□ 0.47
VPS25-205ENST00000590339 DNAJC5BQ9UF47 199 aa17.96■□□□□ 0.47
VPS25-205ENST00000590339 MYO15BQ96JP2 1530 aa17.96■□□□□ 0.47
VPS25-205ENST00000590339 DCAF1Q9Y4B6 1507 aa17.82■□□□□ 0.44
VPS25-205ENST00000590339 UNC13AQ9UPW8 1703 aa17.75■□□□□ 0.43
VPS25-205ENST00000590339 BICRAQ9NZM4 1560 aa17.73■□□□□ 0.43
VPS25-205ENST00000590339 SCRIBQ14160 1630 aa17.66■□□□□ 0.42
VPS25-205ENST00000590339 SHROOM4Q9ULL8 1493 aa17.43■□□□□ 0.38
VPS25-205ENST00000590339 EIF4G1Q04637 1599 aaKnown RBP17.3■□□□□ 0.36
VPS25-205ENST00000590339 CC2D2AQ9P2K1 1620 aa17.29■□□□□ 0.36
VPS25-205ENST00000590339 CECR2Q9BXF3 1484 aa17.29■□□□□ 0.36
VPS25-205ENST00000590339 NCAPD3P42695 1498 aa16.86■□□□□ 0.29
VPS25-205ENST00000590339 ATAD2BQ9ULI0 1458 aa16.85■□□□□ 0.29
VPS25-205ENST00000590339 SMARCA4P51532 1647 aa16.81■□□□□ 0.28
VPS25-205ENST00000590339 BAZ1AQ9NRL2 1556 aaPredicted RBP16.78■□□□□ 0.28
VPS25-205ENST00000590339 SMARCA2P51531 1590 aa16.75■□□□□ 0.27
VPS25-205ENST00000590339 MROH2BQ7Z745 1585 aa16.73■□□□□ 0.27
VPS25-205ENST00000590339 BAZ1BQ9UIG0 1483 aaKnown RBP16.69■□□□□ 0.26
VPS25-205ENST00000590339 HMGXB3Q12766 1538 aa16.65■□□□□ 0.26
VPS25-205ENST00000590339 ERCC6Q03468 1493 aa16.6■□□□□ 0.25
VPS25-205ENST00000590339 SUPT5HO00267 1087 aaKnown RBP16.59■□□□□ 0.25
VPS25-205ENST00000590339 PEG3Q9GZU2 1588 aa16.59■□□□□ 0.25
VPS25-205ENST00000590339 NESP48681 1621 aa16.58■□□□□ 0.24
VPS25-205ENST00000590339 RSF1Q96T23 1441 aaPredicted RBP16.53■□□□□ 0.24
VPS25-205ENST00000590339 WIZO95785 1651 aa16.5■□□□□ 0.23
VPS25-205ENST00000590339 CADPSQ9ULU8 1353 aa16.41■□□□□ 0.22
VPS25-205ENST00000590339 CUX2O14529 1486 aa16.4■□□□□ 0.22
VPS25-205ENST00000590339 LAMC3Q9Y6N6 1575 aa16.38■□□□□ 0.21
VPS25-205ENST00000590339 PDS5BQ9NTI5 1447 aa16.37■□□□□ 0.21
VPS25-205ENST00000590339 DNAJC5Q9H3Z4 198 aa16.3■□□□□ 0.2
VPS25-205ENST00000590339 TOP2AP11388 1531 aaKnown RBP16.29■□□□□ 0.2
VPS25-205ENST00000590339 KIF21AQ7Z4S6 1674 aa16.22■□□□□ 0.19
VPS25-205ENST00000590339 THOC2Q8NI27 1593 aaKnown RBP16.21■□□□□ 0.19
VPS25-205ENST00000590339 CFTRP13569 1480 aa16.21■□□□□ 0.19
VPS25-205ENST00000590339 FANCD2Q9BXW9 1451 aa16.2■□□□□ 0.18
VPS25-205ENST00000590339 CCDC88BA6NC98 1476 aa16.19■□□□□ 0.18
VPS25-205ENST00000590339 MRC2Q9UBG0 1479 aa16.18■□□□□ 0.18
VPS25-205ENST00000590339 CEP164Q9UPV0 1460 aa16.16■□□□□ 0.18
VPS25-205ENST00000590339 WDR62O43379 1518 aa16.08■□□□□ 0.16
VPS25-205ENST00000590339 CHIC1Q5VXU3 224 aa16.04■□□□□ 0.16
VPS25-205ENST00000590339 URB2Q14146 1524 aaKnown RBP16.03■□□□□ 0.16
VPS25-205ENST00000590339 TOPBP1Q92547 1522 aa15.89■□□□□ 0.13
VPS25-205ENST00000590339 OSCARQ8IYS5 282 aa15.85■□□□□ 0.13
VPS25-205ENST00000590339 IFT140Q96RY7 1462 aa15.84■□□□□ 0.13
VPS25-205ENST00000590339 ABCC8Q09428 1581 aa15.84■□□□□ 0.13
VPS25-205ENST00000590339 PRDM2Q13029 1718 aa15.84■□□□□ 0.13
VPS25-205ENST00000590339 ZNF608Q9ULD9 1512 aaPredicted RBP15.84■□□□□ 0.13
VPS25-205ENST00000590339 DNMBPQ6XZF7 1577 aa15.79■□□□□ 0.12
VPS25-205ENST00000590339 TRIM41Q8WV44 630 aa15.77■□□□□ 0.12
VPS25-205ENST00000590339 AQRO60306 1485 aaKnown RBP eCLIP15.76■□□□□ 0.114e-9■■■■□ 22.9
VPS25-205ENST00000590339 SOGA1O94964 1423 aa15.76■□□□□ 0.11
VPS25-205ENST00000590339 RAD54L2Q9Y4B4 1467 aa15.75■□□□□ 0.11
VPS25-205ENST00000590339 POLA1P09884 1462 aaPredicted RBP15.74■□□□□ 0.11
VPS25-205ENST00000590339 FBLN2P98095 1184 aa15.74■□□□□ 0.11
VPS25-205ENST00000590339 TDRD9Q8NDG6 1382 aaKnown RBP15.74■□□□□ 0.11
VPS25-205ENST00000590339 FGD5Q6ZNL6 1462 aa15.69■□□□□ 0.1
VPS25-205ENST00000590339 CUX1P39880 1505 aa15.68■□□□□ 0.1
VPS25-205ENST00000590339 TARBP1Q13395 1621 aaKnown RBP15.66■□□□□ 0.1
VPS25-205ENST00000590339 EIF4G3O43432 1585 aaKnown RBP15.65■□□□□ 0.1
VPS25-205ENST00000590339 CHMP7Q8WUX9 453 aaPredicted RBP15.6■□□□□ 0.09
VPS25-205ENST00000590339 WRNQ14191 1432 aaPredicted RBP eCLIP15.56■□□□□ 0.08
VPS25-205ENST00000590339 SYNJ1O43426 1573 aa15.55■□□□□ 0.08
VPS25-205ENST00000590339 SNAPC4Q5SXM2 1469 aa15.55■□□□□ 0.08
VPS25-205ENST00000590339 GRIN2BQ13224 1484 aa15.52■□□□□ 0.08
VPS25-205ENST00000590339 CYB5RLQ6IPT4 315 aa15.52■□□□□ 0.08
VPS25-205ENST00000590339 BIVM-ERCC5R4GMW8 1640 aa15.52■□□□□ 0.08
VPS25-205ENST00000590339 GAPVD1Q14C86 1478 aa15.52■□□□□ 0.07
VPS25-205ENST00000590339 TOP2BQ02880 1626 aa15.49■□□□□ 0.07
VPS25-205ENST00000590339 ABCA10Q8WWZ4 1543 aa15.48■□□□□ 0.07
VPS25-205ENST00000590339 MAGI1Q96QZ7 1491 aaPredicted RBP15.46■□□□□ 0.07
VPS25-205ENST00000590339 CHD1O14646 1710 aa15.46■□□□□ 0.07
VPS25-205ENST00000590339 ARHGEF11O15085 1522 aa15.46■□□□□ 0.07
VPS25-205ENST00000590339 RIMBP3CA6NJZ7 1639 aa15.45■□□□□ 0.06
VPS25-205ENST00000590339 RIMBP3BA6NNM3 1639 aa15.45■□□□□ 0.06
VPS25-205ENST00000590339 RIMBP3Q9UFD9 1639 aa15.45■□□□□ 0.06
VPS25-205ENST00000590339 WDR97A6NE52 1622 aa15.44■□□□□ 0.06
VPS25-205ENST00000590339 SYNJ2O15056 1496 aa15.43■□□□□ 0.06
VPS25-205ENST00000590339 EEA1Q15075 1411 aa15.41■□□□□ 0.06
VPS25-205ENST00000590339 ABCA5Q8WWZ7 1642 aa15.37■□□□□ 0.05
VPS25-205ENST00000590339 PBRM1Q86U86 1689 aa15.35■□□□□ 0.05
VPS25-205ENST00000590339 LOC105371045A0A1W2PR82 267 aa15.34■□□□□ 0.05
VPS25-205ENST00000590339 ARAP1Q96P48 1450 aa15.33■□□□□ 0.05
VPS25-205ENST00000590339 FHAD1B1AJZ9 1412 aa15.33■□□□□ 0.04
VPS25-205ENST00000590339 CLASP1Q7Z460 1538 aa15.33■□□□□ 0.04
VPS25-205ENST00000590339 GRIN2AQ12879 1464 aa15.32■□□□□ 0.04
VPS25-205ENST00000590339 TRHP20396 242 aaPredicted RBP15.31■□□□□ 0.04
VPS25-205ENST00000590339 RUSC2Q8N2Y8 1516 aa15.3■□□□□ 0.04
VPS25-205ENST00000590339 FAM9AQ8IZU1 332 aaPredicted RBP15.28■□□□□ 0.04
VPS25-205ENST00000590339 KIF21BO75037 1637 aa15.28■□□□□ 0.04
VPS25-205ENST00000590339 ADAMTS12P58397 1594 aa15.27■□□□□ 0.03
VPS25-205ENST00000590339 ERICH3Q5RHP9 1530 aa15.27■□□□□ 0.03
VPS25-205ENST00000590339 KIF27Q86VH2 1401 aa15.26■□□□□ 0.03
VPS25-205ENST00000590339 IGF1RP08069 1367 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms