Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CHKB-CPT1BH3BT56 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CHKB-CPT1BH3BT56 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
CHKB-CPT1BH3BT56 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC11.51□□□□□ -0.57
CHKB-CPT1BH3BT56 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CHKB-CPT1BH3BT56 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CHKB-CPT1BH3BT56 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CHKB-CPT1BH3BT56 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC11.51□□□□□ -0.57
CHKB-CPT1BH3BT56 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CHKB-CPT1BH3BT56 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC11.51□□□□□ -0.57
CHKB-CPT1BH3BT56 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
CHKB-CPT1BH3BT56 AL359504.2-201ENST00000605506 1601 ntBASIC11.51□□□□□ -0.57
CHKB-CPT1BH3BT56 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CHKB-CPT1BH3BT56 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
CHKB-CPT1BH3BT56 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC11.51□□□□□ -0.57
CHKB-CPT1BH3BT56 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC11.51□□□□□ -0.57
CHKB-CPT1BH3BT56 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CHKB-CPT1BH3BT56 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
CHKB-CPT1BH3BT56 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC11.51□□□□□ -0.57
CHKB-CPT1BH3BT56 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC11.51□□□□□ -0.57
CHKB-CPT1BH3BT56 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
CHKB-CPT1BH3BT56 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
CHKB-CPT1BH3BT56 AC098818.2-201ENST00000564925 2320 ntBASIC11.51□□□□□ -0.57
CHKB-CPT1BH3BT56 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 AC138969.2-201ENST00000532739 9932 ntBASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CHKB-CPT1BH3BT56 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 RPS2-210ENST00000530225 765 ntTSL 2 BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CHKB-CPT1BH3BT56 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CHKB-CPT1BH3BT56 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms