RNA–Protein interactions for RNA: ENST00000263121.11

SMARCB1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,690 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-201ENST00000263121 NISCHQ9Y2I1 1504 aa52.55■■■■■ 6
SMARCB1-201ENST00000263121 CCDC180Q9P1Z9 1646 aa45.98■■■■■ 4.95
SMARCB1-201ENST00000263121 ZCCHC6Q5VYS8 1495 aaKnown RBP44.12■■■■■ 4.65
SMARCB1-201ENST00000263121 ABCC9O60706 1549 aa43.54■■■■■ 4.56
SMARCB1-201ENST00000263121 DCAF1Q9Y4B6 1507 aa43.51■■■■■ 4.56
SMARCB1-201ENST00000263121 DCAF8L2P0C7V8 631 aa43.27■■■■■ 4.52
SMARCB1-201ENST00000263121 MYO15BQ96JP2 1530 aa43.08■■■■■ 4.49
SMARCB1-201ENST00000263121 NACADO15069 1562 aa42.84■■■■■ 4.45
SMARCB1-201ENST00000263121 SHROOM4Q9ULL8 1493 aa42.58■■■■■ 4.41
SMARCB1-201ENST00000263121 RB1CC1Q8TDY2 1594 aa42.51■■■■■ 4.4
SMARCB1-201ENST00000263121 SCRIBQ14160 1630 aa42.17■■■■■ 4.34
SMARCB1-201ENST00000263121 UNC13AQ9UPW8 1703 aa41.66■■■■■ 4.26
SMARCB1-201ENST00000263121 BICRAQ9NZM4 1560 aa41.25■■■■■ 4.19
SMARCB1-201ENST00000263121 PABPN1Q86U42 306 aaKnown RBP eCLIP40.98■■■■■ 4.15
SMARCB1-201ENST00000263121 SUPT5HO00267 1087 aaKnown RBP40.84■■■■■ 4.13
SMARCB1-201ENST00000263121 CECR2Q9BXF3 1484 aa40.81■■■■■ 4.12
SMARCB1-201ENST00000263121 RSF1Q96T23 1441 aaPredicted RBP40.67■■■■■ 4.1
SMARCB1-201ENST00000263121 BAZ1AQ9NRL2 1556 aaPredicted RBP40.6■■■■■ 4.09
SMARCB1-201ENST00000263121 MROH2BQ7Z745 1585 aa40.57■■■■■ 4.09
SMARCB1-201ENST00000263121 SMARCA4P51532 1647 aa40.45■■■■■ 4.07
SMARCB1-201ENST00000263121 WIZO95785 1651 aa40.22■■■■■ 4.03
SMARCB1-201ENST00000263121 PEG3Q9GZU2 1588 aa40.01■■■■■ 4
SMARCB1-201ENST00000263121 EIF4G1Q04637 1599 aaKnown RBP40■■■■□ 3.99
SMARCB1-201ENST00000263121 TOP2AP11388 1531 aaKnown RBP39.84■■■■□ 3.97
SMARCB1-201ENST00000263121 ATAD2BQ9ULI0 1458 aa39.82■■■■□ 3.97
SMARCB1-201ENST00000263121 SMARCA2P51531 1590 aa39.81■■■■□ 3.96
SMARCB1-201ENST00000263121 BAZ1BQ9UIG0 1483 aaKnown RBP39.56■■■■□ 3.92
SMARCB1-201ENST00000263121 NCAPD3P42695 1498 aa39.53■■■■□ 3.92
SMARCB1-201ENST00000263121 HMGXB3Q12766 1538 aa39.48■■■■□ 3.91
SMARCB1-201ENST00000263121 CC2D2AQ9P2K1 1620 aa39.45■■■■□ 3.91
SMARCB1-201ENST00000263121 CCDC88BA6NC98 1476 aa39.39■■■■□ 3.9
SMARCB1-201ENST00000263121 CHIC1Q5VXU3 224 aa39.06■■■■□ 3.84
SMARCB1-201ENST00000263121 CFTRP13569 1480 aa38.59■■■■□ 3.77
SMARCB1-201ENST00000263121 DNAJC5BQ9UF47 199 aa38.57■■■■□ 3.76
SMARCB1-201ENST00000263121 ABCC8Q09428 1581 aa38.48■■■■□ 3.75
SMARCB1-201ENST00000263121 CADPSQ9ULU8 1353 aa38.47■■■■□ 3.75
SMARCB1-201ENST00000263121 TRIM41Q8WV44 630 aa38.45■■■■□ 3.75
SMARCB1-201ENST00000263121 PRDM2Q13029 1718 aa38.42■■■■□ 3.74
SMARCB1-201ENST00000263121 WRNQ14191 1432 aaPredicted RBP eCLIP38.27■■■■□ 3.72
SMARCB1-201ENST00000263121 LAMC3Q9Y6N6 1575 aa38.23■■■■□ 3.71
SMARCB1-201ENST00000263121 NESP48681 1621 aa38.18■■■■□ 3.7
SMARCB1-201ENST00000263121 SYNJ1O43426 1573 aa38.14■■■■□ 3.7
SMARCB1-201ENST00000263121 FANCD2Q9BXW9 1451 aa38.04■■■■□ 3.68
SMARCB1-201ENST00000263121 TOP2BQ02880 1626 aa38.03■■■■□ 3.68
SMARCB1-201ENST00000263121 BIVM-ERCC5R4GMW8 1640 aa38.01■■■■□ 3.68
SMARCB1-201ENST00000263121 CUX1P39880 1505 aa37.96■■■■□ 3.67
SMARCB1-201ENST00000263121 PDS5BQ9NTI5 1447 aa37.89■■■■□ 3.66
SMARCB1-201ENST00000263121 CEP164Q9UPV0 1460 aa37.83■■■■□ 3.65
SMARCB1-201ENST00000263121 KIF21AQ7Z4S6 1674 aa37.76■■■■□ 3.64
SMARCB1-201ENST00000263121 SOGA1O94964 1423 aa37.7■■■■□ 3.63
SMARCB1-201ENST00000263121 DNMBPQ6XZF7 1577 aa37.7■■■■□ 3.63
SMARCB1-201ENST00000263121 FAM9AQ8IZU1 332 aaPredicted RBP37.69■■■■□ 3.62
SMARCB1-201ENST00000263121 EEA1Q15075 1411 aa37.64■■■■□ 3.62
SMARCB1-201ENST00000263121 TOPBP1Q92547 1522 aa37.62■■■■□ 3.61
SMARCB1-201ENST00000263121 URB2Q14146 1524 aaKnown RBP37.6■■■■□ 3.61
SMARCB1-201ENST00000263121 RUSC2Q8N2Y8 1516 aa37.58■■■■□ 3.61
SMARCB1-201ENST00000263121 FGD5Q6ZNL6 1462 aa37.56■■■■□ 3.6
SMARCB1-201ENST00000263121 LOC105371045A0A1W2PR82 267 aa37.5■■■■□ 3.59
SMARCB1-201ENST00000263121 MRC2Q9UBG0 1479 aa37.45■■■■□ 3.58
SMARCB1-201ENST00000263121 POLA1P09884 1462 aaPredicted RBP37.43■■■■□ 3.58
SMARCB1-201ENST00000263121 CSRNP3Q8WYN3 585 aa37.38■■■■□ 3.57
SMARCB1-201ENST00000263121 ERCC6Q03468 1493 aa37.35■■■■□ 3.57
SMARCB1-201ENST00000263121 KIF27Q86VH2 1401 aa37.32■■■■□ 3.56
SMARCB1-201ENST00000263121 WDR62O43379 1518 aa37.29■■■■□ 3.56
SMARCB1-201ENST00000263121 RAD54L2Q9Y4B4 1467 aa37.27■■■■□ 3.56
SMARCB1-201ENST00000263121 ABCA10Q8WWZ4 1543 aa37.26■■■■□ 3.55
SMARCB1-201ENST00000263121 CUX2O14529 1486 aa37.25■■■■□ 3.55
SMARCB1-201ENST00000263121 THOC2Q8NI27 1593 aaKnown RBP37.22■■■■□ 3.55
SMARCB1-201ENST00000263121 WDR97A6NE52 1622 aa37.19■■■■□ 3.54
SMARCB1-201ENST00000263121 KIF21BO75037 1637 aa37.18■■■■□ 3.54
SMARCB1-201ENST00000263121 TARBP1Q13395 1621 aaKnown RBP37.11■■■■□ 3.53
SMARCB1-201ENST00000263121 EHMT2Q96KQ7 1210 aa37.11■■■■□ 3.53
SMARCB1-201ENST00000263121 GOLGA3Q08378 1498 aa37.08■■■■□ 3.53
SMARCB1-201ENST00000263121 PRXQ9BXM0 1461 aa37.05■■■■□ 3.52
SMARCB1-201ENST00000263121 IGF1RP08069 1367 aa37.01■■■■□ 3.51
SMARCB1-201ENST00000263121 ABCA5Q8WWZ7 1642 aa36.99■■■■□ 3.51
SMARCB1-201ENST00000263121 ERICH3Q5RHP9 1530 aa36.97■■■■□ 3.51
SMARCB1-201ENST00000263121 RAPGEF2Q9Y4G8 1499 aa36.96■■■■□ 3.51
SMARCB1-201ENST00000263121 IFT140Q96RY7 1462 aa36.95■■■■□ 3.51
SMARCB1-201ENST00000263121 TNIKQ9UKE5 1360 aa36.92■■■■□ 3.5
SMARCB1-201ENST00000263121 TDRD9Q8NDG6 1382 aaKnown RBP36.89■■■■□ 3.5
SMARCB1-201ENST00000263121 GAPVD1Q14C86 1478 aa36.87■■■■□ 3.49
SMARCB1-201ENST00000263121 UBTFP17480 764 aaKnown RBP36.83■■■■□ 3.49
SMARCB1-201ENST00000263121 CARMIL1Q5VZK9 1371 aa36.8■■■■□ 3.48
SMARCB1-201ENST00000263121 CUL7Q14999 1698 aa36.79■■■■□ 3.48
SMARCB1-201ENST00000263121 ZNF608Q9ULD9 1512 aaPredicted RBP36.73■■■■□ 3.47
SMARCB1-201ENST00000263121 PBRM1Q86U86 1689 aa36.72■■■■□ 3.47
SMARCB1-201ENST00000263121 AQRO60306 1485 aaKnown RBP eCLIP36.72■■■■□ 3.47
SMARCB1-201ENST00000263121 CEP162Q5TB80 1403 aa36.7■■■■□ 3.46
SMARCB1-201ENST00000263121 EIF4G3O43432 1585 aaKnown RBP36.64■■■■□ 3.46
SMARCB1-201ENST00000263121 GRIN2BQ13224 1484 aa36.63■■■■□ 3.45
SMARCB1-201ENST00000263121 ADAMTS12P58397 1594 aa36.52■■■■□ 3.44
SMARCB1-201ENST00000263121 FHAD1B1AJZ9 1412 aa36.48■■■■□ 3.43
SMARCB1-201ENST00000263121 CLIP1P30622 1438 aa36.46■■■■□ 3.43
SMARCB1-201ENST00000263121 SNAPC4Q5SXM2 1469 aa36.4■■■■□ 3.42
SMARCB1-201ENST00000263121 MAGI1Q96QZ7 1491 aaPredicted RBP36.36■■■■□ 3.41
SMARCB1-201ENST00000263121 CTTNBP2Q8WZ74 1663 aa36.35■■■■□ 3.41
SMARCB1-201ENST00000263121 RANGAP1P46060 587 aaPredicted RBP36.23■■■■□ 3.39
SMARCB1-201ENST00000263121 SYNJ2O15056 1496 aa36.21■■■■□ 3.39
SMARCB1-201ENST00000263121 ARHGAP35Q9NRY4 1499 aa36.2■■■■□ 3.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms