RNA–Protein interactions for RNA: ENST00000502971.5

PTPN13-205, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

TSL 1 (best) BASIC

Gene PTPN13, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-205ENST00000502971 NISCHQ9Y2I1 1504 aa49.31■■■■■ 5.48
PTPN13-205ENST00000502971 CCDC180Q9P1Z9 1646 aa43.09■■■■■ 4.49
PTPN13-205ENST00000502971 ZCCHC6Q5VYS8 1495 aaKnown RBP41.47■■■■■ 4.23
PTPN13-205ENST00000502971 ABCC9O60706 1549 aa41.14■■■■■ 4.18
PTPN13-205ENST00000502971 DCAF1Q9Y4B6 1507 aa40.81■■■■■ 4.12
PTPN13-205ENST00000502971 DCAF8L2P0C7V8 631 aa40.6■■■■■ 4.09
PTPN13-205ENST00000502971 MYO15BQ96JP2 1530 aa40.46■■■■■ 4.07
PTPN13-205ENST00000502971 SHROOM4Q9ULL8 1493 aa40.32■■■■■ 4.04
PTPN13-205ENST00000502971 NACADO15069 1562 aa40.31■■■■■ 4.04
PTPN13-205ENST00000502971 RB1CC1Q8TDY2 1594 aa40.08■■■■■ 4.01
PTPN13-205ENST00000502971 SCRIBQ14160 1630 aa39.43■■■■□ 3.9
PTPN13-205ENST00000502971 UNC13AQ9UPW8 1703 aa39.09■■■■□ 3.85
PTPN13-205ENST00000502971 SUPT5HO00267 1087 aaKnown RBP38.94■■■■□ 3.82
PTPN13-205ENST00000502971 BICRAQ9NZM4 1560 aa38.78■■■■□ 3.8
PTPN13-205ENST00000502971 PABPN1Q86U42 306 aaKnown RBP eCLIP38.63■■■■□ 3.78
PTPN13-205ENST00000502971 RSF1Q96T23 1441 aaPredicted RBP38.34■■■■□ 3.73
PTPN13-205ENST00000502971 CECR2Q9BXF3 1484 aa38.26■■■■□ 3.72
PTPN13-205ENST00000502971 MROH2BQ7Z745 1585 aa38.08■■■■□ 3.69
PTPN13-205ENST00000502971 BAZ1AQ9NRL2 1556 aaPredicted RBP38.06■■■■□ 3.68
PTPN13-205ENST00000502971 SMARCA4P51532 1647 aa37.85■■■■□ 3.65
PTPN13-205ENST00000502971 WIZO95785 1651 aa37.77■■■■□ 3.64
PTPN13-205ENST00000502971 EIF4G1Q04637 1599 aaKnown RBP37.71■■■■□ 3.63
PTPN13-205ENST00000502971 PEG3Q9GZU2 1588 aa37.44■■■■□ 3.58
PTPN13-205ENST00000502971 CHIC1Q5VXU3 224 aa37.43■■■■□ 3.58
PTPN13-205ENST00000502971 TOP2AP11388 1531 aaKnown RBP37.42■■■■□ 3.58
PTPN13-205ENST00000502971 SMARCA2P51531 1590 aa37.37■■■■□ 3.57
PTPN13-205ENST00000502971 ATAD2BQ9ULI0 1458 aa37.34■■■■□ 3.57
PTPN13-205ENST00000502971 DNAJC5BQ9UF47 199 aa37.32■■■■□ 3.56
PTPN13-205ENST00000502971 CC2D2AQ9P2K1 1620 aa37.27■■■■□ 3.56
PTPN13-205ENST00000502971 NCAPD3P42695 1498 aa37.2■■■■□ 3.55
PTPN13-205ENST00000502971 HMGXB3Q12766 1538 aa37.09■■■■□ 3.53
PTPN13-205ENST00000502971 BAZ1BQ9UIG0 1483 aaKnown RBP37.09■■■■□ 3.53
PTPN13-205ENST00000502971 CCDC88BA6NC98 1476 aa37.04■■■■□ 3.52
PTPN13-205ENST00000502971 TRIM41Q8WV44 630 aa36.64■■■■□ 3.46
PTPN13-205ENST00000502971 ABCC8Q09428 1581 aa36.3■■■■□ 3.4
PTPN13-205ENST00000502971 CADPSQ9ULU8 1353 aa36.17■■■■□ 3.38
PTPN13-205ENST00000502971 CFTRP13569 1480 aa36.17■■■■□ 3.38
PTPN13-205ENST00000502971 WRNQ14191 1432 aaPredicted RBP eCLIP36.09■■■■□ 3.37
PTPN13-205ENST00000502971 PRDM2Q13029 1718 aa36.08■■■■□ 3.37
PTPN13-205ENST00000502971 LAMC3Q9Y6N6 1575 aa36.03■■■■□ 3.36
PTPN13-205ENST00000502971 LOC105371045A0A1W2PR82 267 aa35.97■■■■□ 3.35
PTPN13-205ENST00000502971 FAM9AQ8IZU1 332 aaPredicted RBP35.91■■■■□ 3.34
PTPN13-205ENST00000502971 NESP48681 1621 aa35.9■■■■□ 3.34
PTPN13-205ENST00000502971 SYNJ1O43426 1573 aa35.89■■■■□ 3.34
PTPN13-205ENST00000502971 PDS5BQ9NTI5 1447 aa35.78■■■■□ 3.32
PTPN13-205ENST00000502971 TOP2BQ02880 1626 aa35.76■■■■□ 3.32
PTPN13-205ENST00000502971 EEA1Q15075 1411 aa35.74■■■■□ 3.31
PTPN13-205ENST00000502971 FANCD2Q9BXW9 1451 aa35.72■■■■□ 3.31
PTPN13-205ENST00000502971 BIVM-ERCC5R4GMW8 1640 aa35.72■■■■□ 3.31
PTPN13-205ENST00000502971 SOGA1O94964 1423 aa35.69■■■■□ 3.3
PTPN13-205ENST00000502971 CUX1P39880 1505 aa35.59■■■■□ 3.29
PTPN13-205ENST00000502971 CEP164Q9UPV0 1460 aa35.58■■■■□ 3.29
PTPN13-205ENST00000502971 RUSC2Q8N2Y8 1516 aa35.52■■■■□ 3.28
PTPN13-205ENST00000502971 CSRNP3Q8WYN3 585 aa35.49■■■■□ 3.27
PTPN13-205ENST00000502971 KIF21AQ7Z4S6 1674 aa35.48■■■■□ 3.27
PTPN13-205ENST00000502971 ERCC6Q03468 1493 aa35.42■■■■□ 3.26
PTPN13-205ENST00000502971 EHMT2Q96KQ7 1210 aa35.36■■■■□ 3.25
PTPN13-205ENST00000502971 DNMBPQ6XZF7 1577 aa35.3■■■■□ 3.24
PTPN13-205ENST00000502971 MRC2Q9UBG0 1479 aa35.3■■■■□ 3.24
PTPN13-205ENST00000502971 URB2Q14146 1524 aaKnown RBP35.27■■■■□ 3.24
PTPN13-205ENST00000502971 TOPBP1Q92547 1522 aa35.25■■■■□ 3.23
PTPN13-205ENST00000502971 KIF21BO75037 1637 aa35.23■■■■□ 3.23
PTPN13-205ENST00000502971 GOLGA3Q08378 1498 aa35.22■■■■□ 3.23
PTPN13-205ENST00000502971 TNIKQ9UKE5 1360 aa35.17■■■■□ 3.22
PTPN13-205ENST00000502971 FGD5Q6ZNL6 1462 aa35.17■■■■□ 3.22
PTPN13-205ENST00000502971 KIF27Q86VH2 1401 aa35.17■■■■□ 3.22
PTPN13-205ENST00000502971 WDR62O43379 1518 aa35.15■■■■□ 3.22
PTPN13-205ENST00000502971 THOC2Q8NI27 1593 aaKnown RBP35.13■■■■□ 3.21
PTPN13-205ENST00000502971 UBTFP17480 764 aaKnown RBP35.03■■■■□ 3.2
PTPN13-205ENST00000502971 POLA1P09884 1462 aaPredicted RBP35.03■■■■□ 3.2
PTPN13-205ENST00000502971 CUX2O14529 1486 aa35■■■■□ 3.19
PTPN13-205ENST00000502971 PRXQ9BXM0 1461 aa34.99■■■■□ 3.19
PTPN13-205ENST00000502971 CEP162Q5TB80 1403 aa34.96■■■■□ 3.19
PTPN13-205ENST00000502971 ERICH3Q5RHP9 1530 aa34.96■■■■□ 3.19
PTPN13-205ENST00000502971 RAPGEF2Q9Y4G8 1499 aa34.95■■■■□ 3.19
PTPN13-205ENST00000502971 ABCA10Q8WWZ4 1543 aa34.9■■■■□ 3.18
PTPN13-205ENST00000502971 RAD54L2Q9Y4B4 1467 aa34.85■■■■□ 3.17
PTPN13-205ENST00000502971 WDR97A6NE52 1622 aa34.84■■■■□ 3.17
PTPN13-205ENST00000502971 IGF1RP08069 1367 aa34.82■■■■□ 3.17
PTPN13-205ENST00000502971 IFT140Q96RY7 1462 aa34.81■■■■□ 3.16
PTPN13-205ENST00000502971 TARBP1Q13395 1621 aaKnown RBP34.77■■■■□ 3.16
PTPN13-205ENST00000502971 CLIP1P30622 1438 aa34.65■■■■□ 3.14
PTPN13-205ENST00000502971 CARMIL1Q5VZK9 1371 aa34.65■■■■□ 3.14
PTPN13-205ENST00000502971 ABCA5Q8WWZ7 1642 aa34.62■■■■□ 3.13
PTPN13-205ENST00000502971 TDRD9Q8NDG6 1382 aaKnown RBP34.58■■■■□ 3.13
PTPN13-205ENST00000502971 TRIM26Q12899 539 aaPredicted RBP34.58■■■■□ 3.13
PTPN13-205ENST00000502971 PCGF6Q9BYE7 350 aa34.58■■■■□ 3.13
PTPN13-205ENST00000502971 CUL7Q14999 1698 aa34.56■■■■□ 3.12
PTPN13-205ENST00000502971 GAPVD1Q14C86 1478 aa34.54■■■■□ 3.12
PTPN13-205ENST00000502971 ZNF608Q9ULD9 1512 aaPredicted RBP34.5■■■■□ 3.11
PTPN13-205ENST00000502971 AQRO60306 1485 aaKnown RBP eCLIP34.46■■■■□ 3.11
PTPN13-205ENST00000502971 EIF4G3O43432 1585 aaKnown RBP34.41■■■■□ 3.1
PTPN13-205ENST00000502971 GRIN2BQ13224 1484 aa34.4■■■■□ 3.1
PTPN13-205ENST00000502971 VPS8Q8N3P4 1428 aa34.4■■■■□ 3.1
PTPN13-205ENST00000502971 PBRM1Q86U86 1689 aa34.38■■■■□ 3.09
PTPN13-205ENST00000502971 RANGAP1P46060 587 aaPredicted RBP34.33■■■■□ 3.09
PTPN13-205ENST00000502971 ARAP1Q96P48 1450 aa34.27■■■■□ 3.08
PTPN13-205ENST00000502971 PPARGC1BQ86YN6 1023 aaKnown RBP34.23■■■■□ 3.07
PTPN13-205ENST00000502971 ARHGAP35Q9NRY4 1499 aa34.23■■■■□ 3.07
PTPN13-205ENST00000502971 MAGI1Q96QZ7 1491 aaPredicted RBP34.21■■■■□ 3.07
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms