RNA–Protein interactions for RNA: ENST00000396081.5

HERPUD2-202, Transcript of HERPUD family member 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HERPUD2, Length 3,057 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2-202ENST00000396081 NISCHQ9Y2I1 1504 aa34.93■■■■□ 3.18
HERPUD2-202ENST00000396081 SHROOM4Q9ULL8 1493 aa31.1■■■□□ 2.57
HERPUD2-202ENST00000396081 SUPT5HO00267 1087 aaKnown RBP30.91■■■□□ 2.54
HERPUD2-202ENST00000396081 HRCP23327 699 aa30.5■■■□□ 2.47
HERPUD2-202ENST00000396081 PCGF6Q9BYE7 350 aa30.24■■■□□ 2.43
HERPUD2-202ENST00000396081 CHIC1Q5VXU3 224 aa30.09■■■□□ 2.41
HERPUD2-202ENST00000396081 MYO15BQ96JP2 1530 aa30.08■■■□□ 2.41
HERPUD2-202ENST00000396081 PPARGC1BQ86YN6 1023 aaKnown RBP30.05■■■□□ 2.4
HERPUD2-202ENST00000396081 DCAF8L2P0C7V8 631 aa29.71■■■□□ 2.35
HERPUD2-202ENST00000396081 ZCCHC6Q5VYS8 1495 aaKnown RBP29.62■■■□□ 2.33
HERPUD2-202ENST00000396081 LOC105371045A0A1W2PR82 267 aa29.5■■■□□ 2.31
HERPUD2-202ENST00000396081 DCAF1Q9Y4B6 1507 aa29.28■■■□□ 2.28
HERPUD2-202ENST00000396081 TRIM26Q12899 539 aaPredicted RBP29.19■■■□□ 2.26
HERPUD2-202ENST00000396081 CCDC180Q9P1Z9 1646 aa28.98■■■□□ 2.23
HERPUD2-202ENST00000396081 PELP1Q8IZL8 1130 aaKnown RBP28.86■■■□□ 2.21
HERPUD2-202ENST00000396081 ZEB1P37275 1124 aaPredicted RBP28.82■■■□□ 2.2
HERPUD2-202ENST00000396081 SCAF1Q9H7N4 1312 aaKnown RBP28.7■■■□□ 2.19
HERPUD2-202ENST00000396081 FAM9AQ8IZU1 332 aaPredicted RBP28.65■■■□□ 2.18
HERPUD2-202ENST00000396081 EHMT2Q96KQ7 1210 aa28.64■■■□□ 2.18
HERPUD2-202ENST00000396081 TRIM41Q8WV44 630 aa28.53■■■□□ 2.16
HERPUD2-202ENST00000396081 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.14■■■□□ 2.1
HERPUD2-202ENST00000396081 ACIN1Q9UKV3 1341 aaKnown RBP28.11■■■□□ 2.09
HERPUD2-202ENST00000396081 CCER1Q8TC90 406 aaPredicted RBP28.1■■■□□ 2.09
HERPUD2-202ENST00000396081 NEUROD1Q13562 356 aa28.09■■■□□ 2.09
HERPUD2-202ENST00000396081 RSF1Q96T23 1441 aaPredicted RBP28.09■■■□□ 2.09
HERPUD2-202ENST00000396081 ABCC9O60706 1549 aa28.07■■■□□ 2.08
HERPUD2-202ENST00000396081 GTF3C3Q9Y5Q9 886 aa27.95■■■□□ 2.07
HERPUD2-202ENST00000396081 RB1CC1Q8TDY2 1594 aa27.91■■■□□ 2.06
HERPUD2-202ENST00000396081 DIEXFQ68CQ4 756 aaKnown RBP27.89■■■□□ 2.06
HERPUD2-202ENST00000396081 CENPBP07199 599 aaPredicted RBP27.88■■■□□ 2.05
HERPUD2-202ENST00000396081 TTBK1Q5TCY1 1321 aaPredicted RBP27.88■■■□□ 2.05
HERPUD2-202ENST00000396081 SCRIBQ14160 1630 aa27.84■■■□□ 2.05
HERPUD2-202ENST00000396081 MYT1Q01538 1121 aa27.59■■■□□ 2.01
HERPUD2-202ENST00000396081 YTHDC1Q96MU7 727 aaKnown RBP27.58■■■□□ 2.01
HERPUD2-202ENST00000396081 CECR2Q9BXF3 1484 aa27.45■■□□□ 1.98
HERPUD2-202ENST00000396081 ZNF316A6NFI3 1004 aaPredicted RBP27.38■■□□□ 1.97
HERPUD2-202ENST00000396081 MROH2BQ7Z745 1585 aa27.33■■□□□ 1.97
HERPUD2-202ENST00000396081 WIZO95785 1651 aa27.21■■□□□ 1.95
HERPUD2-202ENST00000396081 MIER1Q8N108 512 aa27.2■■□□□ 1.94
HERPUD2-202ENST00000396081 UBTFP17480 764 aaKnown RBP27.19■■□□□ 1.94
HERPUD2-202ENST00000396081 CEP162Q5TB80 1403 aa27.17■■□□□ 1.94
HERPUD2-202ENST00000396081 HNRNPUL2Q1KMD3 747 aaKnown RBP27.12■■□□□ 1.93
HERPUD2-202ENST00000396081 WRNQ14191 1432 aaPredicted RBP eCLIP27.1■■□□□ 1.93
HERPUD2-202ENST00000396081 CCDC88BA6NC98 1476 aa27.05■■□□□ 1.92
HERPUD2-202ENST00000396081 ABCC8Q09428 1581 aa27.03■■□□□ 1.92
HERPUD2-202ENST00000396081 SOGA1O94964 1423 aa26.99■■□□□ 1.91
HERPUD2-202ENST00000396081 TNIKQ9UKE5 1360 aa26.96■■□□□ 1.91
HERPUD2-202ENST00000396081 CSRNP3Q8WYN3 585 aa26.96■■□□□ 1.91
HERPUD2-202ENST00000396081 BAZ1AQ9NRL2 1556 aaPredicted RBP26.89■■□□□ 1.9
HERPUD2-202ENST00000396081 EIF4G1Q04637 1599 aaKnown RBP26.85■■□□□ 1.89
HERPUD2-202ENST00000396081 RUSC2Q8N2Y8 1516 aa26.82■■□□□ 1.88
HERPUD2-202ENST00000396081 NACADO15069 1562 aa26.8■■□□□ 1.88
HERPUD2-202ENST00000396081 RANGAP1P46060 587 aaPredicted RBP26.77■■□□□ 1.88
HERPUD2-202ENST00000396081 APLP2Q06481 763 aa26.73■■□□□ 1.87
HERPUD2-202ENST00000396081 GOLGA3Q08378 1498 aa26.67■■□□□ 1.86
HERPUD2-202ENST00000396081 EEA1Q15075 1411 aa26.66■■□□□ 1.86
HERPUD2-202ENST00000396081 TOP2AP11388 1531 aaKnown RBP26.62■■□□□ 1.85
HERPUD2-202ENST00000396081 SUPT16HQ9Y5B9 1047 aaKnown RBP26.61■■□□□ 1.85
HERPUD2-202ENST00000396081 SMARCA2P51531 1590 aa26.55■■□□□ 1.84
HERPUD2-202ENST00000396081 CLIP1P30622 1438 aa26.54■■□□□ 1.84
HERPUD2-202ENST00000396081 CLSPNQ9HAW4 1339 aa26.41■■□□□ 1.82
HERPUD2-202ENST00000396081 CEP164Q9UPV0 1460 aa26.41■■□□□ 1.82
HERPUD2-202ENST00000396081 SMARCA4P51532 1647 aa26.4■■□□□ 1.82
HERPUD2-202ENST00000396081 VPS8Q8N3P4 1428 aa26.4■■□□□ 1.82
HERPUD2-202ENST00000396081 TSHZ2Q9NRE2 1034 aa26.39■■□□□ 1.82
HERPUD2-202ENST00000396081 BCANQ96GW7 911 aa26.32■■□□□ 1.8
HERPUD2-202ENST00000396081 DHX57Q6P158 1386 aaKnown RBP26.29■■□□□ 1.8
HERPUD2-202ENST00000396081 ANP32EQ9BTT0 268 aa26.28■■□□□ 1.8
HERPUD2-202ENST00000396081 RAPGEF2Q9Y4G8 1499 aa26.23■■□□□ 1.79
HERPUD2-202ENST00000396081 KCNH8Q96L42 1107 aa26.23■■□□□ 1.79
HERPUD2-202ENST00000396081 ITGAEP38570 1179 aa26.22■■□□□ 1.79
HERPUD2-202ENST00000396081 KIF21BO75037 1637 aa26.18■■□□□ 1.78
HERPUD2-202ENST00000396081 PABPN1Q86U42 306 aaKnown RBP eCLIP26.17■■□□□ 1.78
HERPUD2-202ENST00000396081 SYNJ1O43426 1573 aa26.15■■□□□ 1.78
HERPUD2-202ENST00000396081 KANK4Q5T7N3 995 aaPredicted RBP26.15■■□□□ 1.78
HERPUD2-202ENST00000396081 FKBP8Q14318 412 aa26.1■■□□□ 1.77
HERPUD2-202ENST00000396081 BAZ1BQ9UIG0 1483 aaKnown RBP26.07■■□□□ 1.76
HERPUD2-202ENST00000396081 BCL11AQ9H165 835 aa26.01■■□□□ 1.75
HERPUD2-202ENST00000396081 DDX10Q13206 875 aaKnown RBP25.99■■□□□ 1.75
HERPUD2-202ENST00000396081 NEFLP07196 543 aa25.94■■□□□ 1.74
HERPUD2-202ENST00000396081 TRIM52Q96A61 297 aa25.86■■□□□ 1.73
HERPUD2-202ENST00000396081 CCNB3Q8WWL7 1395 aa25.86■■□□□ 1.73
HERPUD2-202ENST00000396081 ARAP1Q96P48 1450 aa25.86■■□□□ 1.73
HERPUD2-202ENST00000396081 RBM19Q9Y4C8 960 aaKnown RBP25.84■■□□□ 1.73
HERPUD2-202ENST00000396081 HIRIP3Q9BW71 556 aaPredicted RBP25.84■■□□□ 1.73
HERPUD2-202ENST00000396081 UNC13AQ9UPW8 1703 aa25.82■■□□□ 1.72
HERPUD2-202ENST00000396081 RRBP1Q9P2E9 1410 aaKnown RBP25.81■■□□□ 1.72
HERPUD2-202ENST00000396081 SIN3AQ96ST3 1273 aa25.79■■□□□ 1.72
HERPUD2-202ENST00000396081 RAB3GAP2Q9H2M9 1393 aa25.78■■□□□ 1.72
HERPUD2-202ENST00000396081 FAM50AQ14320 339 aaKnown RBP25.69■■□□□ 1.7
HERPUD2-202ENST00000396081 PRXQ9BXM0 1461 aa25.68■■□□□ 1.7
HERPUD2-202ENST00000396081 ANP32CO43423 234 aa25.68■■□□□ 1.7
HERPUD2-202ENST00000396081 CUX2O14529 1486 aa25.65■■□□□ 1.7
HERPUD2-202ENST00000396081 ATAD2BQ9ULI0 1458 aa25.65■■□□□ 1.7
HERPUD2-202ENST00000396081 TOP2BQ02880 1626 aa25.63■■□□□ 1.69
HERPUD2-202ENST00000396081 ERICH3Q5RHP9 1530 aa25.63■■□□□ 1.69
HERPUD2-202ENST00000396081 PPP1R15AO75807 674 aaPredicted RBP25.62■■□□□ 1.69
HERPUD2-202ENST00000396081 MAPKBP1O60336 1514 aa25.61■■□□□ 1.69
HERPUD2-202ENST00000396081 PEG3Q9GZU2 1588 aa25.61■■□□□ 1.69
HERPUD2-202ENST00000396081 WDR97A6NE52 1622 aa25.61■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms