Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.49■□□□□ 0.711e-6■■■□□ 16.2
SMNDC1O75940 BTBD19-208ENST00000489976 539 ntTSL 219.48■□□□□ 0.711e-6■■■□□ 16.2
SMNDC1O75940 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19.33■□□□□ 0.688e-8■■■□□ 16.2
SMNDC1O75940 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.681e-6■■■□□ 16.2
SMNDC1O75940 ARFGAP1-209ENST00000518794 2727 ntTSL 1 (best)19.23■□□□□ 0.672e-8■■■□□ 16.2
SMNDC1O75940 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC19.21■□□□□ 0.671e-6■■■□□ 16.2
SMNDC1O75940 ANKS3-215ENST00000590193 2291 ntTSL 519■□□□□ 0.631e-6■■■□□ 16.2
SMNDC1O75940 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19■□□□□ 0.631e-6■■■□□ 16.2
SMNDC1O75940 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.72■□□□□ 0.591e-6■■■□□ 16.2
SMNDC1O75940 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.571e-6■■■□□ 16.2
SMNDC1O75940 ANKS3-223ENST00000592077 2302 ntTSL 1 (best)18.56■□□□□ 0.561e-6■■■□□ 16.2
SMNDC1O75940 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.34■□□□□ 0.531e-6■■■□□ 16.2
SMNDC1O75940 ARFGAP1-205ENST00000468975 2640 ntTSL 218.27■□□□□ 0.522e-8■■■□□ 16.2
SMNDC1O75940 SLC11A2-210ENST00000547510 924 ntTSL 518.26■□□□□ 0.511e-6■■■□□ 16.2
SMNDC1O75940 ARFGAP1-204ENST00000395285 2697 ntTSL 218.11■□□□□ 0.498e-10■■■□□ 16.2
SMNDC1O75940 PKP4-204ENST00000421462 3099 ntTSL 217.95■□□□□ 0.462e-7■■■□□ 16.2
SMNDC1O75940 SAFB-207ENST00000589863 2708 ntTSL 217.71■□□□□ 0.431e-6■■■□□ 16.2
SMNDC1O75940 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC17.53■□□□□ 0.41e-6■■■□□ 16.2
SMNDC1O75940 SLC11A2-222ENST00000550714 587 ntTSL 417.48■□□□□ 0.391e-6■■■□□ 16.2
SMNDC1O75940 ANKS3-218ENST00000590803 2821 ntTSL 217.47■□□□□ 0.391e-6■■■□□ 16.2
SMNDC1O75940 ANKS3-214ENST00000590147 723 ntTSL 517.32■□□□□ 0.361e-6■■■□□ 16.2
SMNDC1O75940 ARFGAP1-208ENST00000518691 1162 ntTSL 217.31■□□□□ 0.362e-8■■■□□ 16.2
SMNDC1O75940 SLC11A2-219ENST00000549625 585 ntTSL 517.17■□□□□ 0.341e-6■■■□□ 16.2
SMNDC1O75940 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.311e-6■■■□□ 16.2
SMNDC1O75940 SAFB-204ENST00000586934 995 ntTSL 516.74■□□□□ 0.271e-6■■■□□ 16.2
SMNDC1O75940 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.211e-6■■■□□ 16.2
SMNDC1O75940 HS6ST1-204ENST00000494089 585 ntTSL 216.09■□□□□ 0.171e-6■■■□□ 16.2
SMNDC1O75940 ARFGAP1-207ENST00000518618 1244 ntTSL 216.03■□□□□ 0.168e-10■■■□□ 16.2
SMNDC1O75940 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.141e-6■■■□□ 16.2
SMNDC1O75940 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.141e-6■■■□□ 16.2
SMNDC1O75940 SLC11A2-211ENST00000547579 581 ntTSL 515.76■□□□□ 0.111e-6■■■□□ 16.2
SMNDC1O75940 PSME2-204ENST00000558931 2754 ntTSL 515.54■□□□□ 0.081e-6■■■□□ 16.2
SMNDC1O75940 ANKS3-221ENST00000591653 3098 ntTSL 1 (best)15.4■□□□□ 0.061e-6■■■□□ 16.2
SMNDC1O75940 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.051e-6■■■□□ 16.2
SMNDC1O75940 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.011e-6■■■□□ 16.2
SMNDC1O75940 ANKS3-220ENST00000591281 540 ntTSL 414.6□□□□□ -0.071e-6■■■□□ 16.2
SMNDC1O75940 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.45□□□□□ -0.11e-6■■■□□ 16.2
SMNDC1O75940 ANKS3-222ENST00000592068 916 ntTSL 314.43□□□□□ -0.11e-6■■■□□ 16.2
SMNDC1O75940 PSME2-212ENST00000560370 620 ntTSL 314.31□□□□□ -0.121e-6■■■□□ 16.2
SMNDC1O75940 PSME2-203ENST00000558273 1502 ntTSL 214.13□□□□□ -0.151e-6■■■□□ 16.2
SMNDC1O75940 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC14.06□□□□□ -0.161e-6■■■□□ 16.2
SMNDC1O75940 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.161e-6■■■□□ 16.2
SMNDC1O75940 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC13.62□□□□□ -0.231e-6■■■□□ 16.2
SMNDC1O75940 TGFBI-201ENST00000442011 2804 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.247e-18■■■□□ 16.2
SMNDC1O75940 ANKS3-229ENST00000593120 572 ntTSL 413.51□□□□□ -0.251e-6■■■□□ 16.2
SMNDC1O75940 ANKS3-209ENST00000587005 566 ntTSL 413.51□□□□□ -0.251e-6■■■□□ 16.2
SMNDC1O75940 HS6ST1-203ENST00000469019 559 ntTSL 413.41□□□□□ -0.261e-6■■■□□ 16.2
SMNDC1O75940 DNMT3A-202ENST00000321117 4279 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.291e-6■■■□□ 16.2
SMNDC1O75940 DNMT3A-207ENST00000461228 581 ntTSL 513.11□□□□□ -0.311e-6■■■□□ 16.2
SMNDC1O75940 ATL2-201ENST00000378954 2868 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.331e-6■■■□□ 16.2
SMNDC1O75940 HS6ST1-201ENST00000259241 3932 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.331e-6■■■□□ 16.2
SMNDC1O75940 TGFBI-206ENST00000507018 2469 ntTSL 512.99□□□□□ -0.337e-18■■■□□ 16.2
SMNDC1O75940 DNMT3A-204ENST00000380756 4477 ntTSL 1 (best)12.96□□□□□ -0.341e-6■■■□□ 16.2
SMNDC1O75940 ATL2-204ENST00000406122 2864 ntTSL 5 BASIC12.94□□□□□ -0.341e-6■■■□□ 16.2
SMNDC1O75940 ANKS3-213ENST00000589065 561 ntTSL 512.81□□□□□ -0.361e-6■■■□□ 16.2
SMNDC1O75940 DNMT3A-211ENST00000474887 847 ntTSL 312.62□□□□□ -0.391e-6■■■□□ 16.2
SMNDC1O75940 PSME2-202ENST00000471700 706 ntTSL 312.54□□□□□ -0.41e-6■■■□□ 16.2
SMNDC1O75940 TGFBI-205ENST00000506699 3159 ntTSL 212.45□□□□□ -0.427e-18■■■□□ 16.2
SMNDC1O75940 SAFB-214ENST00000592707 940 ntTSL 212.42□□□□□ -0.421e-6■■■□□ 16.2
SMNDC1O75940 DNMT3A-201ENST00000264709 9501 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.461e-6■■■□□ 16.2
SMNDC1O75940 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.461e-6■■■□□ 16.2
SMNDC1O75940 DNMT3A-214ENST00000491288 472 ntTSL 312.08□□□□□ -0.481e-6■■■□□ 16.2
SMNDC1O75940 ATL2-203ENST00000405384 1905 ntTSL 1 (best)11.96□□□□□ -0.51e-6■■■□□ 16.2
SMNDC1O75940 ATL2-206ENST00000419554 2335 ntTSL 2 BASIC11.34□□□□□ -0.591e-6■■■□□ 16.2
SMNDC1O75940 SLC11A2-205ENST00000545993 1937 ntTSL 1 (best) BASIC11.25□□□□□ -0.611e-6■■■□□ 16.2
SMNDC1O75940 HP1BP3-213ENST00000488722 639 ntTSL 511.15□□□□□ -0.621e-6■■■□□ 16.2
SMNDC1O75940 DNMT3A-203ENST00000380746 3589 ntTSL 1 (best) BASIC11.03□□□□□ -0.641e-6■■■□□ 16.2
SMNDC1O75940 PSME2-214ENST00000560592 760 ntTSL 210.95□□□□□ -0.661e-6■■■□□ 16.2
SMNDC1O75940 PSME2-215ENST00000560788 785 ntTSL 210.95□□□□□ -0.661e-6■■■□□ 16.2
SMNDC1O75940 PSME2-217ENST00000615264 874 ntTSL 5 BASIC10.95□□□□□ -0.661e-6■■■□□ 16.2
SMNDC1O75940 SLC11A2-207ENST00000546636 2125 ntTSL 1 (best)10.93□□□□□ -0.661e-6■■■□□ 16.2
SMNDC1O75940 PSME2-209ENST00000559453 1721 ntTSL 510.92□□□□□ -0.661e-6■■■□□ 16.2
SMNDC1O75940 SLC11A2-209ENST00000547198 2486 ntAPPRIS ALT1 TSL 1 (best) BASIC10.77□□□□□ -0.691e-6■■■□□ 16.2
SMNDC1O75940 PSME2-213ENST00000560410 755 ntTSL 3 BASIC10.75□□□□□ -0.691e-6■■■□□ 16.2
SMNDC1O75940 TTL-201ENST00000233336 14269 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.721e-6■■■□□ 16.2
SMNDC1O75940 SLC11A2-212ENST00000547688 2401 ntAPPRIS ALT2 TSL 5 BASIC10.48□□□□□ -0.731e-6■■■□□ 16.2
SMNDC1O75940 TGFBI-214ENST00000515433 4661 ntTSL 210.01□□□□□ -0.817e-18■■■□□ 16.2
SMNDC1O75940 TTL-203ENST00000476615 725 ntTSL 39.96□□□□□ -0.821e-6■■■□□ 16.2
SMNDC1O75940 SLC11A2-203ENST00000394904 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC9.25□□□□□ -0.931e-6■■■□□ 16.2
SMNDC1O75940 HNRNPLL-210ENST00000488099 544 ntTSL 39.18□□□□□ -0.941e-6■■■□□ 16.2
SMNDC1O75940 SLC11A2-217ENST00000549110 565 ntTSL 48.96□□□□□ -0.981e-6■■■□□ 16.2
SMNDC1O75940 SLC11A2-202ENST00000262052 4132 ntAPPRIS P3 TSL 1 (best) BASIC8.49□□□□□ -1.051e-6■■■□□ 16.2
SMNDC1O75940 SLC11A2-213ENST00000547732 546 ntTSL 48.39□□□□□ -1.071e-6■■■□□ 16.2
SMNDC1O75940 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC8.37□□□□□ -1.071e-6■■■□□ 16.2
SMNDC1O75940 SLC11A2-206ENST00000546488 569 ntTSL 48.15□□□□□ -1.11e-6■■■□□ 16.2
SMNDC1O75940 ANKS3-208ENST00000586632 553 ntTSL 48.13□□□□□ -1.111e-6■■■□□ 16.2
SMNDC1O75940 PKP4-211ENST00000481115 884 ntTSL 57.97□□□□□ -1.132e-7■■■□□ 16.2
SMNDC1O75940 DNMT3A-212ENST00000482935 519 ntTSL 57.57□□□□□ -1.21e-6■■■□□ 16.2
SMNDC1O75940 PSME2-207ENST00000559056 512 ntTSL 57.5□□□□□ -1.211e-6■■■□□ 16.2
SMNDC1O75940 HP1BP3-201ENST00000312239 3938 ntAPPRIS P1 TSL 2 BASIC7.43□□□□□ -1.221e-6■■■□□ 16.2
SMNDC1O75940 SLC11A2-224ENST00000550995 551 ntTSL 47.26□□□□□ -1.251e-6■■■□□ 16.2
SMNDC1O75940 SLC11A2-201ENST00000262051 3986 ntAPPRIS ALT1 TSL 1 (best) BASIC7.14□□□□□ -1.271e-6■■■□□ 16.2
SMNDC1O75940 HP1BP3-214ENST00000491748 706 ntTSL 56.95□□□□□ -1.31e-6■■■□□ 16.2
SMNDC1O75940 SLC11A2-218ENST00000549193 557 ntTSL 46.91□□□□□ -1.31e-6■■■□□ 16.2
SMNDC1O75940 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC6.7□□□□□ -1.341e-6■■■□□ 16.2
SMNDC1O75940 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC6.67□□□□□ -1.341e-6■■■□□ 16.2
SMNDC1O75940 HNRNPLL-201ENST00000272249 2190 ntTSL 25.92□□□□□ -1.461e-6■■■□□ 16.2
SMNDC1O75940 MBNL3-208ENST00000436215 891 ntTSL 35.63□□□□□ -1.518e-8■■■□□ 16.2
SMNDC1O75940 SLC11A2-215ENST00000548193 576 ntTSL 35.47□□□□□ -1.531e-6■■■□□ 16.2
SMNDC1O75940 SAFB-212ENST00000592396 620 ntTSL 45.39□□□□□ -1.551e-6■■■□□ 16.2
Retrieved 100 of 11,362 protein–RNA pairs in 371.1 ms