Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 TMC6-207ENST00000586697 571 ntTSL 413.26□□□□□ -0.295e-7■■■□□ 16.4
SMNDC1O75940 TMC6-221ENST00000592063 743 ntTSL 512.61□□□□□ -0.395e-7■■■□□ 16.4
SMNDC1O75940 SRSF6-202ENST00000483871 1680 ntTSL 212.5□□□□□ -0.418e-12■■■□□ 16.4
SMNDC1O75940 SRSF6-201ENST00000244020 4325 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.828e-12■■■□□ 16.4
SMNDC1O75940 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.512e-6■■■□□ 16.4
SMNDC1O75940 UBE2I-216ENST00000567383 538 ntTSL 415.37■□□□□ 0.052e-6■■■□□ 16.4
SMNDC1O75940 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC12.87□□□□□ -0.351e-6■■■□□ 16.4
SMNDC1O75940 RPL13A-207ENST00000476300 619 ntTSL 39.38□□□□□ -0.912e-87■■■□□ 16.4
SMNDC1O75940 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.773e-6■■■□□ 16.4
SMNDC1O75940 RHOT2-222ENST00000569675 2559 ntTSL 218.74■□□□□ 0.593e-6■■■□□ 16.4
SMNDC1O75940 RHOT2-218ENST00000568636 3098 ntTSL 217.44■□□□□ 0.383e-6■■■□□ 16.4
SMNDC1O75940 SNORD1A-201ENST00000364968 72 ntBASIC2.03□□□□□ -2.088e-16■■■□□ 16.4
SMNDC1O75940 BRD2-213ENST00000495733 3404 ntTSL 216.35■□□□□ 0.212e-6■■■□□ 16.4
SMNDC1O75940 BRD2-219ENST00000607833 2338 ntAPPRIS ALT2 TSL 1 (best)14.74□□□□□ -0.052e-6■■■□□ 16.4
SMNDC1O75940 BRD2-206ENST00000456339 887 ntTSL 413.56□□□□□ -0.242e-6■■■□□ 16.4
SMNDC1O75940 ZYX-203ENST00000392910 2123 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.239e-8■■■□□ 16.4
SMNDC1O75940 ZYX-209ENST00000477373 504 ntTSL 49.77□□□□□ -0.859e-8■■■□□ 16.4
SMNDC1O75940 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.055e-6■■■□□ 16.4
SMNDC1O75940 NOC2L-203ENST00000477976 4201 ntTSL 511.55□□□□□ -0.565e-6■■■□□ 16.4
SMNDC1O75940 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC29.17■■■□□ 2.266e-9■■■□□ 16.4
SMNDC1O75940 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC27.67■■■□□ 2.026e-9■■■□□ 16.4
SMNDC1O75940 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC24.29■■□□□ 1.486e-9■■■□□ 16.4
SMNDC1O75940 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.222e-7■■■□□ 16.4
SMNDC1O75940 SDCCAG3-211ENST00000486441 570 ntTSL 512.85□□□□□ -0.356e-9■■■□□ 16.4
SMNDC1O75940 SDCCAG3-205ENST00000417512 626 ntTSL 211.82□□□□□ -0.526e-9■■■□□ 16.4
SMNDC1O75940 CCAR1-203ENST00000479143 478 ntTSL 58.09□□□□□ -1.112e-10■■■□□ 16.4
SMNDC1O75940 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.27■□□□□ 0.677e-7■■■□□ 16.4
SMNDC1O75940 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.526e-12■■■□□ 16.3
SMNDC1O75940 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.496e-12■■■□□ 16.3
SMNDC1O75940 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.9■□□□□ 0.36e-12■■■□□ 16.3
SMNDC1O75940 EHMT1-248ENST00000637891 1930 ntTSL 516.47■□□□□ 0.236e-12■■■□□ 16.3
SMNDC1O75940 EHMT1-201ENST00000371394 2679 ntTSL 215.12■□□□□ 0.016e-12■■■□□ 16.3
SMNDC1O75940 EHMT1-228ENST00000636027 3114 ntTSL 513.28□□□□□ -0.286e-12■■■□□ 16.3
SMNDC1O75940 EHMT1-205ENST00000462942 7842 ntTSL 210.57□□□□□ -0.726e-12■■■□□ 16.3
SMNDC1O75940 EHMT1-237ENST00000637261 4208 ntTSL 510.22□□□□□ -0.776e-12■■■□□ 16.3
SMNDC1O75940 ISYNA1-204ENST00000577916 2148 ntTSL 525.57■■□□□ 1.681e-6■■■□□ 16.3
SMNDC1O75940 ISYNA1-211ENST00000582811 2039 ntTSL 221.96■■□□□ 1.111e-6■■■□□ 16.3
SMNDC1O75940 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.841e-6■■■□□ 16.3
SMNDC1O75940 ISYNA1-210ENST00000582770 1654 ntTSL 217.22■□□□□ 0.351e-6■■■□□ 16.3
SMNDC1O75940 ISYNA1-205ENST00000578352 592 ntTSL 216.97■□□□□ 0.311e-6■■■□□ 16.3
SMNDC1O75940 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC15.95■□□□□ 0.141e-6■■■□□ 16.3
SMNDC1O75940 ISYNA1-203ENST00000577820 1466 ntTSL 512.68□□□□□ -0.381e-6■■■□□ 16.3
SMNDC1O75940 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC24.02■■□□□ 1.442e-6■■■□□ 16.3
SMNDC1O75940 TCF3-210ENST00000587235 986 ntTSL 522.77■■□□□ 1.242e-6■■■□□ 16.3
SMNDC1O75940 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.36■□□□□ 0.532e-6■■■□□ 16.3
SMNDC1O75940 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.372e-6■■■□□ 16.3
SMNDC1O75940 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.162e-6■■■□□ 16.3
SMNDC1O75940 TCF3-202ENST00000344749 4289 ntTSL 5 BASIC13.22□□□□□ -0.292e-6■■■□□ 16.3
SMNDC1O75940 EEF1A1-207ENST00000490569 1802 ntTSL 58.66□□□□□ -1.022e-11■■■□□ 16.3
SMNDC1O75940 EEF1A1-208ENST00000491404 633 ntTSL 38.49□□□□□ -1.052e-11■■■□□ 16.3
SMNDC1O75940 EEF1A1-209ENST00000495333 958 ntTSL 57.27□□□□□ -1.252e-11■■■□□ 16.3
SMNDC1O75940 EEF1A1-206ENST00000488500 792 ntTSL 27.14□□□□□ -1.272e-11■■■□□ 16.3
SMNDC1O75940 PFKFB4-210ENST00000468162 576 ntTSL 56.42□□□□□ -1.381e-8■■■□□ 16.3
SMNDC1O75940 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.87■□□□□ 0.778e-7■■■□□ 16.3
SMNDC1O75940 PTBP1-210ENST00000586944 4661 ntTSL 217.62■□□□□ 0.418e-7■■■□□ 16.3
SMNDC1O75940 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.238e-7■■■□□ 16.3
SMNDC1O75940 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC16.5■□□□□ 0.238e-7■■■□□ 16.3
SMNDC1O75940 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.118e-7■■■□□ 16.3
SMNDC1O75940 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC15.1■□□□□ 0.018e-7■■■□□ 16.3
SMNDC1O75940 CIRBP-209ENST00000586555 716 ntTSL 218.5■□□□□ 0.552e-20■■■□□ 16.3
SMNDC1O75940 CIRBP-220ENST00000588917 1087 ntTSL 217.37■□□□□ 0.372e-20■■■□□ 16.3
SMNDC1O75940 CIRBP-245ENST00000621399 1044 ntTSL 1 (best)16.55■□□□□ 0.242e-20■■■□□ 16.3
SMNDC1O75940 CIRBP-227ENST00000590188 361 ntTSL 316.22■□□□□ 0.192e-20■■■□□ 16.3
SMNDC1O75940 CIRBP-203ENST00000444172 584 ntTSL 315.94■□□□□ 0.142e-20■■■□□ 16.3
SMNDC1O75940 SETD2-209ENST00000638947 1984 ntTSL 5 BASIC10.06□□□□□ -0.81e-15■■■□□ 16.3
SMNDC1O75940 SLC3A2-207ENST00000535768 597 ntTSL 58.54□□□□□ -1.043e-13■■■□□ 16.3
SMNDC1O75940 SETD2-207ENST00000484689 561 ntTSL 48.26□□□□□ -1.091e-15■■■□□ 16.3
SMNDC1O75940 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.351e-15■■■□□ 16.3
SMNDC1O75940 SETD2-201ENST00000330022 8172 ntTSL 1 (best)6.24□□□□□ -1.411e-15■■■□□ 16.3
SMNDC1O75940 SETD2-204ENST00000431180 7555 ntTSL 25.96□□□□□ -1.461e-15■■■□□ 16.3
SMNDC1O75940 SETD2-205ENST00000445387 7075 ntTSL 54.06□□□□□ -1.761e-15■■■□□ 16.3
SMNDC1O75940 PTBP1-213ENST00000587191 357 ntTSL 510.35□□□□□ -0.758e-7■■■□□ 16.3
SMNDC1O75940 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC21.23■□□□□ 0.995e-11■■■□□ 16.3
SMNDC1O75940 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.275e-11■■■□□ 16.3
SMNDC1O75940 DDIT3-203ENST00000547526 644 ntTSL 311.02□□□□□ -0.651e-10■■■□□ 16.3
SMNDC1O75940 DDIT3-201ENST00000346473 906 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.761e-10■■■□□ 16.3
SMNDC1O75940 DDIT3-202ENST00000547303 872 ntAPPRIS P1 TSL 2 BASIC9.86□□□□□ -0.831e-10■■■□□ 16.3
SMNDC1O75940 DDIT3-205ENST00000552740 951 ntTSL 1 (best) BASIC7.82□□□□□ -1.161e-10■■■□□ 16.3
SMNDC1O75940 DDIT3-204ENST00000551116 1067 ntTSL 1 (best) BASIC7.4□□□□□ -1.221e-10■■■□□ 16.3
SMNDC1O75940 DDIT3-206ENST00000623876 1151 nt6.9□□□□□ -1.31e-10■■■□□ 16.3
SMNDC1O75940 DHX9-206ENST00000483416 814 ntTSL 514.97□□□□□ -0.011e-13■■■□□ 16.2
SMNDC1O75940 GAS5-225ENST00000454813 621 ntTSL 36.1□□□□□ -1.433e-27■■■□□ 16.2
SMNDC1O75940 GAS5-207ENST00000422207 643 ntTSL 25.99□□□□□ -1.453e-27■■■□□ 16.2
SMNDC1O75940 GAS5-212ENST00000434796 575 ntTSL 25.4□□□□□ -1.543e-27■■■□□ 16.2
SMNDC1O75940 GAS5-202ENST00000414075 413 ntTSL 2 BASIC5.3□□□□□ -1.563e-27■■■□□ 16.2
SMNDC1O75940 GAS5-217ENST00000444470 424 ntTSL 24.99□□□□□ -1.613e-27■■■□□ 16.2
SMNDC1O75940 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC23.45■■□□□ 1.341e-6■■■□□ 16.2
SMNDC1O75940 BTBD19-207ENST00000485668 2659 ntTSL 223.32■■□□□ 1.321e-6■■■□□ 16.2
SMNDC1O75940 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.23■■□□□ 1.311e-6■■■□□ 16.2
SMNDC1O75940 ANKS3-226ENST00000592698 1128 ntTSL 522.07■■□□□ 1.121e-6■■■□□ 16.2
SMNDC1O75940 ANKS3-207ENST00000586605 968 ntTSL 522.07■■□□□ 1.121e-6■■■□□ 16.2
SMNDC1O75940 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC22.07■■□□□ 1.121e-6■■■□□ 16.2
SMNDC1O75940 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC21.96■■□□□ 1.111e-6■■■□□ 16.2
SMNDC1O75940 ANKS3-206ENST00000586166 672 ntTSL 321.7■■□□□ 1.061e-6■■■□□ 16.2
SMNDC1O75940 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.64■■□□□ 1.061e-6■■■□□ 16.2
SMNDC1O75940 ANKS3-217ENST00000590730 2198 ntTSL 221.34■■□□□ 1.011e-6■■■□□ 16.2
SMNDC1O75940 ANKS3-205ENST00000586159 868 ntTSL 321.23■□□□□ 0.991e-6■■■□□ 16.2
SMNDC1O75940 BTBD19-204ENST00000464114 505 ntTSL 320.6■□□□□ 0.891e-6■■■□□ 16.2
SMNDC1O75940 BTBD19-209ENST00000495433 934 ntTSL 319.76■□□□□ 0.751e-6■■■□□ 16.2
SMNDC1O75940 ANKS3-225ENST00000592421 1146 ntTSL 319.66■□□□□ 0.741e-6■■■□□ 16.2
Retrieved 100 of 11,362 protein–RNA pairs in 131.3 ms