Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 KDM4B-206ENST00000588361 3039 ntTSL 216.36■□□□□ 0.212e-6■■■□□ 16.8
SMNDC1O75940 KDM4B-207ENST00000588961 560 ntTSL 48.42□□□□□ -1.062e-6■■■□□ 16.8
SMNDC1O75940 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.78■□□□□ 0.286e-7■■■□□ 16.8
SMNDC1O75940 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.053e-6■■■□□ 16.8
SMNDC1O75940 LSS-211ENST00000522411 2523 ntTSL 2 BASIC15.14■□□□□ 0.016e-7■■■□□ 16.8
SMNDC1O75940 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 06e-7■■■□□ 16.8
SMNDC1O75940 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.266e-7■■■□□ 16.8
SMNDC1O75940 CTCFL-202ENST00000371196 3491 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.363e-6■■■□□ 16.8
SMNDC1O75940 CTCFL-207ENST00000429804 3864 ntTSL 1 (best) BASIC11.21□□□□□ -0.613e-6■■■□□ 16.8
SMNDC1O75940 CTCFL-201ENST00000243914 3567 ntAPPRIS P3 TSL 1 (best) BASIC10.64□□□□□ -0.713e-6■■■□□ 16.8
SMNDC1O75940 CTCFL-216ENST00000608263 4040 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.713e-6■■■□□ 16.8
SMNDC1O75940 CTCFL-222ENST00000609232 3668 ntAPPRIS P3 TSL 1 (best) BASIC10.06□□□□□ -0.83e-6■■■□□ 16.8
SMNDC1O75940 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.31e-6■■■□□ 16.8
SMNDC1O75940 MAT2A-201ENST00000306434 2819 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.923e-25■■■□□ 16.8
SMNDC1O75940 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.462e-6■■■□□ 16.8
SMNDC1O75940 HNRNPL-212ENST00000601449 1918 ntTSL 516.24■□□□□ 0.192e-6■■■□□ 16.8
SMNDC1O75940 HNRNPL-210ENST00000600873 1633 ntTSL 5 BASIC12.3□□□□□ -0.442e-6■■■□□ 16.8
SMNDC1O75940 HNRNPL-202ENST00000388749 1952 ntTSL 511.13□□□□□ -0.632e-6■■■□□ 16.8
SMNDC1O75940 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.471e-6■■■□□ 16.8
SMNDC1O75940 ARID3A-205ENST00000587532 1016 ntTSL 516.63■□□□□ 0.251e-6■■■□□ 16.8
SMNDC1O75940 ARID3A-202ENST00000457152 549 ntTSL 511.9□□□□□ -0.51e-6■■■□□ 16.8
SMNDC1O75940 NNT-202ENST00000344920 4310 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.395e-6■■■□□ 16.7
SMNDC1O75940 NNT-208ENST00000512996 4288 ntTSL 5 BASIC8.59□□□□□ -1.035e-6■■■□□ 16.7
SMNDC1O75940 NNT-201ENST00000264663 6483 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.145e-6■■■□□ 16.7
SMNDC1O75940 GPCPD1-205ENST00000481038 6649 ntTSL 24.77□□□□□ -1.653e-7■■■□□ 16.7
SMNDC1O75940 OAZ1-210ENST00000593012 1357 ntTSL 217.15■□□□□ 0.347e-8■■■□□ 16.7
SMNDC1O75940 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.327e-8■■■□□ 16.7
SMNDC1O75940 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.037e-8■■■□□ 16.7
SMNDC1O75940 OAZ1-201ENST00000581150 1131 ntTSL 514.92□□□□□ -0.027e-8■■■□□ 16.7
SMNDC1O75940 OAZ1-207ENST00000590943 1012 ntTSL 214.37□□□□□ -0.117e-8■■■□□ 16.7
SMNDC1O75940 BCAR1-217ENST00000566465 547 ntTSL 413.81□□□□□ -0.27e-7■■■□□ 16.7
SMNDC1O75940 BCAR1-214ENST00000563700 576 ntTSL 412.94□□□□□ -0.347e-7■■■□□ 16.7
SMNDC1O75940 BCAR1-219ENST00000567215 581 ntTSL 412.35□□□□□ -0.437e-7■■■□□ 16.7
SMNDC1O75940 RHBG-208ENST00000620376 1984 ntTSL 220.67■□□□□ 0.93e-9■■■□□ 16.7
SMNDC1O75940 RHBG-201ENST00000451864 1927 ntTSL 219.56■□□□□ 0.723e-9■■■□□ 16.7
SMNDC1O75940 RHBG-205ENST00000612897 1862 ntTSL 1 (best)17.61■□□□□ 0.413e-9■■■□□ 16.7
SMNDC1O75940 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.333e-9■■■□□ 16.7
SMNDC1O75940 RHBG-207ENST00000618120 2424 ntTSL 214.68□□□□□ -0.063e-9■■■□□ 16.7
SMNDC1O75940 RHBG-206ENST00000613460 1912 ntTSL 1 (best)14.41□□□□□ -0.13e-9■■■□□ 16.7
SMNDC1O75940 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.321e-6■■■□□ 16.7
SMNDC1O75940 AL359504.2-201ENST00000605506 1601 ntBASIC21.79■■□□□ 1.087e-7■■■□□ 16.7
SMNDC1O75940 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC15.92■□□□□ 0.148e-7■■■□□ 16.7
SMNDC1O75940 C22orf34-205ENST00000416411 542 ntTSL 412.27□□□□□ -0.458e-7■■■□□ 16.7
SMNDC1O75940 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC3.13□□□□□ -1.911e-7■■■□□ 16.7
SMNDC1O75940 GPS1-225ENST00000585084 997 ntTSL 325.71■■□□□ 1.711e-12■■■□□ 16.7
SMNDC1O75940 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC24.85■■□□□ 1.571e-12■■■□□ 16.7
SMNDC1O75940 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC23.05■■□□□ 1.284e-8■■■□□ 16.7
SMNDC1O75940 GPS1-223ENST00000584229 535 ntTSL 322.27■■□□□ 1.161e-12■■■□□ 16.7
SMNDC1O75940 TRAP1-207ENST00000571804 781 ntTSL 520.79■□□□□ 0.924e-8■■■□□ 16.7
SMNDC1O75940 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.441e-12■■■□□ 16.7
SMNDC1O75940 GPS1-209ENST00000578642 579 ntTSL 416.72■□□□□ 0.271e-12■■■□□ 16.7
SMNDC1O75940 GPS1-214ENST00000581418 580 ntTSL 216.51■□□□□ 0.231e-12■■■□□ 16.7
SMNDC1O75940 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.181e-12■■■□□ 16.7
SMNDC1O75940 GPS1-224ENST00000584460 1855 ntTSL 215.91■□□□□ 0.141e-12■■■□□ 16.7
SMNDC1O75940 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.82■□□□□ 0.121e-12■■■□□ 16.7
SMNDC1O75940 GPS1-221ENST00000583961 581 ntTSL 515.79■□□□□ 0.121e-12■■■□□ 16.7
SMNDC1O75940 FGFR3-207ENST00000474521 545 ntTSL 215.77■□□□□ 0.122e-9■■■□□ 16.7
SMNDC1O75940 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15.55■□□□□ 0.081e-12■■■□□ 16.7
SMNDC1O75940 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.081e-12■■■□□ 16.7
SMNDC1O75940 GPS1-212ENST00000580716 567 ntTSL 415.53■□□□□ 0.081e-12■■■□□ 16.7
SMNDC1O75940 GPS1-216ENST00000582327 561 ntTSL 415.53■□□□□ 0.081e-12■■■□□ 16.7
SMNDC1O75940 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.031e-12■■■□□ 16.7
SMNDC1O75940 GPS1-213ENST00000580723 594 ntTSL 414.87□□□□□ -0.031e-12■■■□□ 16.7
SMNDC1O75940 GPS1-207ENST00000578392 552 ntTSL 414.67□□□□□ -0.061e-12■■■□□ 16.7
SMNDC1O75940 GPS1-203ENST00000392357 4076 ntTSL 1 (best)14.21□□□□□ -0.131e-12■■■□□ 16.7
SMNDC1O75940 GPS1-210ENST00000580141 924 ntTSL 514.01□□□□□ -0.171e-12■■■□□ 16.7
SMNDC1O75940 GPS1-219ENST00000583641 795 ntTSL 213.65□□□□□ -0.221e-12■■■□□ 16.7
SMNDC1O75940 GPS1-211ENST00000580627 543 ntTSL 413.59□□□□□ -0.231e-12■■■□□ 16.7
SMNDC1O75940 TRAP1-201ENST00000246957 2296 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.524e-8■■■□□ 16.7
SMNDC1O75940 GPS1-215ENST00000581578 470 ntTSL 411.69□□□□□ -0.541e-12■■■□□ 16.7
SMNDC1O75940 GPS1-217ENST00000583009 574 ntTSL 411.21□□□□□ -0.611e-12■■■□□ 16.7
SMNDC1O75940 GPS1-220ENST00000583885 594 ntTSL 410.85□□□□□ -0.671e-12■■■□□ 16.7
SMNDC1O75940 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.096e-7■■■□□ 16.7
SMNDC1O75940 RPS12-202ENST00000484616 639 ntTSL 23.77□□□□□ -1.816e-7■■■□□ 16.7
SMNDC1O75940 COL18A1-201ENST00000342220 3386 ntTSL 213.58□□□□□ -0.233e-10■■■□□ 16.7
SMNDC1O75940 RPS2-207ENST00000527826 837 ntTSL 1 (best)23.12■■□□□ 1.297e-25■■■□□ 16.7
SMNDC1O75940 FURIN-205ENST00000560824 580 ntTSL 313.58□□□□□ -0.241e-6■■■□□ 16.7
SMNDC1O75940 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC23.02■■□□□ 1.282e-6■■■□□ 16.7
SMNDC1O75940 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.152e-6■■■□□ 16.7
SMNDC1O75940 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.4■□□□□ 0.72e-6■■■□□ 16.7
SMNDC1O75940 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC15.77■□□□□ 0.122e-6■■■□□ 16.7
SMNDC1O75940 DOT1L-205ENST00000478937 638 ntTSL 311.98□□□□□ -0.493e-6■■■□□ 16.6
SMNDC1O75940 MAN2C1-236ENST00000567360 457 ntTSL 217.52■□□□□ 0.42e-7■■■□□ 16.6
SMNDC1O75940 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC13.73□□□□□ -0.214e-11■■■□□ 16.6
SMNDC1O75940 RPS24-204ENST00000440692 2814 ntTSL 3 BASIC13.45□□□□□ -0.264e-11■■■□□ 16.6
SMNDC1O75940 RPS24-209ENST00000476545 815 ntTSL 311.73□□□□□ -0.534e-11■■■□□ 16.6
SMNDC1O75940 RPS24-212ENST00000482069 539 ntTSL 310.02□□□□□ -0.814e-11■■■□□ 16.6
SMNDC1O75940 RPS24-206ENST00000465692 778 ntTSL 29.3□□□□□ -0.924e-11■■■□□ 16.6
SMNDC1O75940 RPS24-211ENST00000480662 711 ntTSL 28.89□□□□□ -0.994e-11■■■□□ 16.6
SMNDC1O75940 RPS24-202ENST00000372360 510 ntAPPRIS P4 TSL 1 (best) BASIC8.16□□□□□ -1.14e-11■■■□□ 16.6
SMNDC1O75940 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC7.31□□□□□ -1.244e-11■■■□□ 16.6
SMNDC1O75940 RPS24-213ENST00000485708 544 ntTSL 26.64□□□□□ -1.354e-11■■■□□ 16.6
SMNDC1O75940 HSP90B1-207ENST00000550595 694 ntTSL 28.16□□□□□ -1.15e-29■■■□□ 16.6
SMNDC1O75940 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC13.6□□□□□ -0.232e-25■■■□□ 16.6
SMNDC1O75940 SEC14L1-206ENST00000561633 603 ntTSL 1 (best)12.91□□□□□ -0.342e-25■■■□□ 16.6
SMNDC1O75940 SNHG20-202ENST00000434411 2143 ntTSL 1 (best) BASIC12.85□□□□□ -0.352e-25■■■□□ 16.6
SMNDC1O75940 SEC14L1-224ENST00000589827 1791 ntTSL 212.58□□□□□ -0.42e-25■■■□□ 16.6
SMNDC1O75940 SEC14L1-202ENST00000430767 5283 ntAPPRIS P3 TSL 2 BASIC12.41□□□□□ -0.422e-25■■■□□ 16.6
SMNDC1O75940 SEC14L1-207ENST00000561721 637 ntTSL 212.4□□□□□ -0.422e-25■■■□□ 16.6
SMNDC1O75940 SNHG20-201ENST00000366365 1028 ntTSL 211.98□□□□□ -0.492e-25■■■□□ 16.6
Retrieved 100 of 11,362 protein–RNA pairs in 384.9 ms