Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PCDHA3Q9Y5H8 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.86■■□□□ 1.09
PCDHA3Q9Y5H8 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDHA3Q9Y5H8 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDHA3Q9Y5H8 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDHA3Q9Y5H8 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.85■■□□□ 1.09
PCDHA3Q9Y5H8 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDHA3Q9Y5H8 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.85■■□□□ 1.09
PCDHA3Q9Y5H8 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
PCDHA3Q9Y5H8 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.85■■□□□ 1.09
PCDHA3Q9Y5H8 MIR939-201ENST00000401314 82 ntBASIC21.85■■□□□ 1.09
PCDHA3Q9Y5H8 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.85■■□□□ 1.09
PCDHA3Q9Y5H8 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDHA3Q9Y5H8 GABARAPL3-202ENST00000624044 1851 ntBASIC21.85■■□□□ 1.09
PCDHA3Q9Y5H8 AP005212.1-201ENST00000581547 1997 ntBASIC21.85■■□□□ 1.09
PCDHA3Q9Y5H8 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDHA3Q9Y5H8 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDHA3Q9Y5H8 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
PCDHA3Q9Y5H8 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PCDHA3Q9Y5H8 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
PCDHA3Q9Y5H8 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.84■■□□□ 1.09
PCDHA3Q9Y5H8 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
PCDHA3Q9Y5H8 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PCDHA3Q9Y5H8 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PCDHA3Q9Y5H8 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PCDHA3Q9Y5H8 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PCDHA3Q9Y5H8 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.84■■□□□ 1.09
PCDHA3Q9Y5H8 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.84■■□□□ 1.09
PCDHA3Q9Y5H8 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PCDHA3Q9Y5H8 AC092667.1-201ENST00000434301 2586 ntBASIC21.84■■□□□ 1.09
PCDHA3Q9Y5H8 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PCDHA3Q9Y5H8 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
PCDHA3Q9Y5H8 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.84■■□□□ 1.09
PCDHA3Q9Y5H8 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
PCDHA3Q9Y5H8 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PCDHA3Q9Y5H8 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
PCDHA3Q9Y5H8 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.83■■□□□ 1.09
PCDHA3Q9Y5H8 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
PCDHA3Q9Y5H8 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.83■■□□□ 1.09
PCDHA3Q9Y5H8 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PCDHA3Q9Y5H8 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PCDHA3Q9Y5H8 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
PCDHA3Q9Y5H8 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.83■■□□□ 1.09
PCDHA3Q9Y5H8 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
PCDHA3Q9Y5H8 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.83■■□□□ 1.09
PCDHA3Q9Y5H8 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.83■■□□□ 1.09
PCDHA3Q9Y5H8 AC110285.6-201ENST00000617652 491 ntBASIC21.83■■□□□ 1.09
PCDHA3Q9Y5H8 AL136967.2-201ENST00000623968 743 ntBASIC21.83■■□□□ 1.09
PCDHA3Q9Y5H8 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PCDHA3Q9Y5H8 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.83■■□□□ 1.09
PCDHA3Q9Y5H8 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
PCDHA3Q9Y5H8 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
PCDHA3Q9Y5H8 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
PCDHA3Q9Y5H8 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
PCDHA3Q9Y5H8 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC21.82■■□□□ 1.08
PCDHA3Q9Y5H8 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.82■■□□□ 1.08
PCDHA3Q9Y5H8 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDHA3Q9Y5H8 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.82■■□□□ 1.08
PCDHA3Q9Y5H8 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDHA3Q9Y5H8 AC073314.1-201ENST00000568729 2216 ntBASIC21.82■■□□□ 1.08
PCDHA3Q9Y5H8 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDHA3Q9Y5H8 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDHA3Q9Y5H8 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDHA3Q9Y5H8 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PCDHA3Q9Y5H8 AC091305.1-201ENST00000479476 895 ntBASIC21.82■■□□□ 1.08
PCDHA3Q9Y5H8 AF213884.3-201ENST00000563833 479 ntBASIC21.82■■□□□ 1.08
PCDHA3Q9Y5H8 EEF1DP3-203ENST00000566025 782 ntBASIC21.82■■□□□ 1.08
PCDHA3Q9Y5H8 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.82■■□□□ 1.08
PCDHA3Q9Y5H8 AL031432.3-201ENST00000607698 485 ntBASIC21.82■■□□□ 1.08
PCDHA3Q9Y5H8 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.82■■□□□ 1.08
PCDHA3Q9Y5H8 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.82■■□□□ 1.08
PCDHA3Q9Y5H8 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.82■■□□□ 1.08
PCDHA3Q9Y5H8 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.82■■□□□ 1.08
PCDHA3Q9Y5H8 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDHA3Q9Y5H8 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
PCDHA3Q9Y5H8 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PCDHA3Q9Y5H8 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
PCDHA3Q9Y5H8 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC21.81■■□□□ 1.08
PCDHA3Q9Y5H8 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC21.81■■□□□ 1.08
PCDHA3Q9Y5H8 AC012414.1-201ENST00000556676 535 ntBASIC21.81■■□□□ 1.08
PCDHA3Q9Y5H8 AC053503.5-201ENST00000601508 636 ntBASIC21.81■■□□□ 1.08
PCDHA3Q9Y5H8 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
PCDHA3Q9Y5H8 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDHA3Q9Y5H8 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
PCDHA3Q9Y5H8 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PCDHA3Q9Y5H8 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PCDHA3Q9Y5H8 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDHA3Q9Y5H8 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC21.8■■□□□ 1.08
PCDHA3Q9Y5H8 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDHA3Q9Y5H8 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
PCDHA3Q9Y5H8 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDHA3Q9Y5H8 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDHA3Q9Y5H8 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.8■■□□□ 1.08
PCDHA3Q9Y5H8 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.8■■□□□ 1.08
PCDHA3Q9Y5H8 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDHA3Q9Y5H8 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDHA3Q9Y5H8 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDHA3Q9Y5H8 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PCDHA3Q9Y5H8 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDHA3Q9Y5H8 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms