RNA–Protein interactions for RNA: ENST00000054950.3

RCN1-201, Transcript of reticulocalbin 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene RCN1, Length 2,572 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RCN1-201ENST00000054950 NISCHQ9Y2I1 1504 aa40.88■■■■■ 4.14
RCN1-201ENST00000054950 SHROOM4Q9ULL8 1493 aa35.58■■■■□ 3.29
RCN1-201ENST00000054950 SUPT5HO00267 1087 aaKnown RBP35.02■■■■□ 3.2
RCN1-201ENST00000054950 ZCCHC6Q5VYS8 1495 aaKnown RBP34.65■■■■□ 3.14
RCN1-201ENST00000054950 CCDC180Q9P1Z9 1646 aa34.4■■■■□ 3.1
RCN1-201ENST00000054950 MYO15BQ96JP2 1530 aa34.22■■■■□ 3.07
RCN1-201ENST00000054950 DCAF8L2P0C7V8 631 aa34.17■■■■□ 3.06
RCN1-201ENST00000054950 CHIC1Q5VXU3 224 aa34.1■■■■□ 3.05
RCN1-201ENST00000054950 HRCP23327 699 aa33.73■■■□□ 2.99
RCN1-201ENST00000054950 PCGF6Q9BYE7 350 aa33.6■■■□□ 2.97
RCN1-201ENST00000054950 DCAF1Q9Y4B6 1507 aa33.32■■■□□ 2.92
RCN1-201ENST00000054950 LOC105371045A0A1W2PR82 267 aa33.29■■■□□ 2.92
RCN1-201ENST00000054950 PPARGC1BQ86YN6 1023 aaKnown RBP33.25■■■□□ 2.91
RCN1-201ENST00000054950 ABCC9O60706 1549 aa32.8■■■□□ 2.84
RCN1-201ENST00000054950 SCRIBQ14160 1630 aa32.66■■■□□ 2.82
RCN1-201ENST00000054950 TRIM26Q12899 539 aaPredicted RBP32.65■■■□□ 2.82
RCN1-201ENST00000054950 RSF1Q96T23 1441 aaPredicted RBP32.59■■■□□ 2.81
RCN1-201ENST00000054950 FAM9AQ8IZU1 332 aaPredicted RBP32.42■■■□□ 2.78
RCN1-201ENST00000054950 TRIM41Q8WV44 630 aa32.42■■■□□ 2.78
RCN1-201ENST00000054950 RB1CC1Q8TDY2 1594 aa32.42■■■□□ 2.78
RCN1-201ENST00000054950 EHMT2Q96KQ7 1210 aa32.32■■■□□ 2.76
RCN1-201ENST00000054950 CECR2Q9BXF3 1484 aa32.05■■■□□ 2.72
RCN1-201ENST00000054950 ZEB1P37275 1124 aaPredicted RBP31.96■■■□□ 2.71
RCN1-201ENST00000054950 MROH2BQ7Z745 1585 aa31.93■■■□□ 2.7
RCN1-201ENST00000054950 WIZO95785 1651 aa31.82■■■□□ 2.68
RCN1-201ENST00000054950 NACADO15069 1562 aa31.73■■■□□ 2.67
RCN1-201ENST00000054950 BAZ1AQ9NRL2 1556 aaPredicted RBP31.49■■■□□ 2.63
RCN1-201ENST00000054950 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.49■■■□□ 2.63
RCN1-201ENST00000054950 SCAF1Q9H7N4 1312 aaKnown RBP31.47■■■□□ 2.63
RCN1-201ENST00000054950 EIF4G1Q04637 1599 aaKnown RBP31.45■■■□□ 2.63
RCN1-201ENST00000054950 TTBK1Q5TCY1 1321 aaPredicted RBP31.36■■■□□ 2.61
RCN1-201ENST00000054950 ABCC8Q09428 1581 aa31.34■■■□□ 2.61
RCN1-201ENST00000054950 CCER1Q8TC90 406 aaPredicted RBP31.32■■■□□ 2.6
RCN1-201ENST00000054950 CCDC88BA6NC98 1476 aa31.25■■■□□ 2.59
RCN1-201ENST00000054950 TOP2AP11388 1531 aaKnown RBP31.15■■■□□ 2.58
RCN1-201ENST00000054950 SOGA1O94964 1423 aa31.09■■■□□ 2.57
RCN1-201ENST00000054950 SMARCA4P51532 1647 aa31.08■■■□□ 2.57
RCN1-201ENST00000054950 SMARCA2P51531 1590 aa31.07■■■□□ 2.56
RCN1-201ENST00000054950 CEP162Q5TB80 1403 aa31.06■■■□□ 2.56
RCN1-201ENST00000054950 WRNQ14191 1432 aaPredicted RBP eCLIP30.99■■■□□ 2.55
RCN1-201ENST00000054950 RUSC2Q8N2Y8 1516 aa30.97■■■□□ 2.55
RCN1-201ENST00000054950 NEUROD1Q13562 356 aa30.95■■■□□ 2.55
RCN1-201ENST00000054950 UNC13AQ9UPW8 1703 aa30.92■■■□□ 2.54
RCN1-201ENST00000054950 ACIN1Q9UKV3 1341 aaKnown RBP30.91■■■□□ 2.54
RCN1-201ENST00000054950 DIEXFQ68CQ4 756 aaKnown RBP30.91■■■□□ 2.54
RCN1-201ENST00000054950 PELP1Q8IZL8 1130 aaKnown RBP30.91■■■□□ 2.54
RCN1-201ENST00000054950 UBTFP17480 764 aaKnown RBP30.88■■■□□ 2.53
RCN1-201ENST00000054950 TNIKQ9UKE5 1360 aa30.87■■■□□ 2.53
RCN1-201ENST00000054950 CSRNP3Q8WYN3 585 aa30.84■■■□□ 2.53
RCN1-201ENST00000054950 PABPN1Q86U42 306 aaKnown RBP eCLIP30.7■■■□□ 2.51e-11■■■■■ 42.3
RCN1-201ENST00000054950 EEA1Q15075 1411 aa30.68■■■□□ 2.5
RCN1-201ENST00000054950 GTF3C3Q9Y5Q9 886 aa30.66■■■□□ 2.5
RCN1-201ENST00000054950 GOLGA3Q08378 1498 aa30.65■■■□□ 2.5
RCN1-201ENST00000054950 CENPBP07199 599 aaPredicted RBP30.57■■■□□ 2.48
RCN1-201ENST00000054950 HNRNPUL2Q1KMD3 747 aaKnown RBP30.54■■■□□ 2.48
RCN1-201ENST00000054950 ZNF316A6NFI3 1004 aaPredicted RBP30.52■■■□□ 2.48
RCN1-201ENST00000054950 SYNJ1O43426 1573 aa30.5■■■□□ 2.47
RCN1-201ENST00000054950 BICRAQ9NZM4 1560 aa30.46■■■□□ 2.47
RCN1-201ENST00000054950 YTHDC1Q96MU7 727 aaKnown RBP30.42■■■□□ 2.46
RCN1-201ENST00000054950 RANGAP1P46060 587 aaPredicted RBP30.41■■■□□ 2.46
RCN1-201ENST00000054950 CEP164Q9UPV0 1460 aa30.4■■■□□ 2.46
RCN1-201ENST00000054950 CLIP1P30622 1438 aa30.38■■■□□ 2.45
RCN1-201ENST00000054950 KIF21BO75037 1637 aa30.34■■■□□ 2.45
RCN1-201ENST00000054950 PEG3Q9GZU2 1588 aa30.31■■■□□ 2.44
RCN1-201ENST00000054950 RAPGEF2Q9Y4G8 1499 aa30.28■■■□□ 2.44
RCN1-201ENST00000054950 MIER1Q8N108 512 aa30.27■■■□□ 2.44
RCN1-201ENST00000054950 VPS8Q8N3P4 1428 aa30.25■■■□□ 2.43
RCN1-201ENST00000054950 ATAD2BQ9ULI0 1458 aa30.18■■■□□ 2.42
RCN1-201ENST00000054950 APLP2Q06481 763 aa30.17■■■□□ 2.42
RCN1-201ENST00000054950 BAZ1BQ9UIG0 1483 aaKnown RBP30.14■■■□□ 2.42
RCN1-201ENST00000054950 TOP2BQ02880 1626 aa29.95■■■□□ 2.39
RCN1-201ENST00000054950 KANK4Q5T7N3 995 aaPredicted RBP29.89■■■□□ 2.37
RCN1-201ENST00000054950 ARAP1Q96P48 1450 aa29.86■■■□□ 2.37
RCN1-201ENST00000054950 DHX57Q6P158 1386 aaKnown RBP29.84■■■□□ 2.37
RCN1-201ENST00000054950 BIVM-ERCC5R4GMW8 1640 aa29.81■■■□□ 2.36
RCN1-201ENST00000054950 PRXQ9BXM0 1461 aa29.79■■■□□ 2.36
RCN1-201ENST00000054950 ERICH3Q5RHP9 1530 aa29.74■■■□□ 2.35
RCN1-201ENST00000054950 CUX1P39880 1505 aa29.67■■■□□ 2.34
RCN1-201ENST00000054950 CLSPNQ9HAW4 1339 aa29.63■■■□□ 2.33
RCN1-201ENST00000054950 ITGAEP38570 1179 aa29.63■■■□□ 2.33
RCN1-201ENST00000054950 RRBP1Q9P2E9 1410 aaKnown RBP29.58■■■□□ 2.33
RCN1-201ENST00000054950 KIF27Q86VH2 1401 aa29.55■■■□□ 2.32
RCN1-201ENST00000054950 ARHGAP35Q9NRY4 1499 aa29.53■■■□□ 2.32
RCN1-201ENST00000054950 CCNB3Q8WWL7 1395 aa29.49■■■□□ 2.31
RCN1-201ENST00000054950 NCAPD3P42695 1498 aa29.42■■■□□ 2.3
RCN1-201ENST00000054950 HMGXB3Q12766 1538 aa29.42■■■□□ 2.3
RCN1-201ENST00000054950 CUX2O14529 1486 aa29.4■■■□□ 2.3
RCN1-201ENST00000054950 SUPT16HQ9Y5B9 1047 aaKnown RBP29.4■■■□□ 2.3
RCN1-201ENST00000054950 CFTRP13569 1480 aa29.36■■■□□ 2.29
RCN1-201ENST00000054950 RAB3GAP2Q9H2M9 1393 aa29.35■■■□□ 2.29
RCN1-201ENST00000054950 KCNH8Q96L42 1107 aa29.35■■■□□ 2.29
RCN1-201ENST00000054950 MYT1Q01538 1121 aa29.32■■■□□ 2.28
RCN1-201ENST00000054950 MAPKBP1O60336 1514 aa29.29■■■□□ 2.28
RCN1-201ENST00000054950 IGF1RP08069 1367 aa29.25■■■□□ 2.27
RCN1-201ENST00000054950 TIAM1Q13009 1591 aa29.23■■■□□ 2.27
RCN1-201ENST00000054950 SIN3AQ96ST3 1273 aa29.18■■■□□ 2.26
RCN1-201ENST00000054950 PHLDB1Q86UU1 1377 aa29.18■■■□□ 2.26
RCN1-201ENST00000054950 P3H3Q8IVL6 736 aa29.17■■■□□ 2.26
RCN1-201ENST00000054950 FAM50AQ14320 339 aaKnown RBP29.16■■■□□ 2.26
RCN1-201ENST00000054950 CARMIL1Q5VZK9 1371 aa29.14■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms