RNA–Protein interactions for RNA: ENST00000441443.6

SHOX2-203, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHOX2, Length 3,038 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-203ENST00000441443 NISCHQ9Y2I1 1504 aa40.36■■■■■ 4.05
SHOX2-203ENST00000441443 SHROOM4Q9ULL8 1493 aa34.85■■■■□ 3.17
SHOX2-203ENST00000441443 DCAF8L2P0C7V8 631 aa34.39■■■■□ 3.1
SHOX2-203ENST00000441443 SUPT5HO00267 1087 aaKnown RBP34.26■■■■□ 3.07
SHOX2-203ENST00000441443 CCDC180Q9P1Z9 1646 aa34.16■■■■□ 3.06
SHOX2-203ENST00000441443 HRCP23327 699 aa34.16■■■■□ 3.06
SHOX2-203ENST00000441443 ZCCHC6Q5VYS8 1495 aaKnown RBP34.01■■■■□ 3.04
SHOX2-203ENST00000441443 MYO15BQ96JP2 1530 aa33.7■■■□□ 2.99
SHOX2-203ENST00000441443 PCGF6Q9BYE7 350 aa33.7■■■□□ 2.99
SHOX2-203ENST00000441443 PPARGC1BQ86YN6 1023 aaKnown RBP33.61■■■□□ 2.97
SHOX2-203ENST00000441443 CHIC1Q5VXU3 224 aa33.54■■■□□ 2.96
SHOX2-203ENST00000441443 LOC105371045A0A1W2PR82 267 aa32.83■■■□□ 2.85
SHOX2-203ENST00000441443 DCAF1Q9Y4B6 1507 aa32.83■■■□□ 2.85
SHOX2-203ENST00000441443 TRIM26Q12899 539 aaPredicted RBP32.58■■■□□ 2.81
SHOX2-203ENST00000441443 ABCC9O60706 1549 aa32.51■■■□□ 2.8
SHOX2-203ENST00000441443 SCRIBQ14160 1630 aa32.43■■■□□ 2.78
SHOX2-203ENST00000441443 PELP1Q8IZL8 1130 aaKnown RBP32.42■■■□□ 2.78
SHOX2-203ENST00000441443 SCAF1Q9H7N4 1312 aaKnown RBP32.22■■■□□ 2.75
SHOX2-203ENST00000441443 ZEB1P37275 1124 aaPredicted RBP32.16■■■□□ 2.74
SHOX2-203ENST00000441443 RSF1Q96T23 1441 aaPredicted RBP31.95■■■□□ 2.71
SHOX2-203ENST00000441443 NACADO15069 1562 aa31.8■■■□□ 2.68
SHOX2-203ENST00000441443 FAM9AQ8IZU1 332 aaPredicted RBP31.72■■■□□ 2.67
SHOX2-203ENST00000441443 CECR2Q9BXF3 1484 aa31.71■■■□□ 2.67
SHOX2-203ENST00000441443 EHMT2Q96KQ7 1210 aa31.65■■■□□ 2.66
SHOX2-203ENST00000441443 TRIM41Q8WV44 630 aa31.65■■■□□ 2.66
SHOX2-203ENST00000441443 RB1CC1Q8TDY2 1594 aa31.58■■■□□ 2.65
SHOX2-203ENST00000441443 MROH2BQ7Z745 1585 aa31.48■■■□□ 2.63
SHOX2-203ENST00000441443 ACIN1Q9UKV3 1341 aaKnown RBP31.47■■■□□ 2.63
SHOX2-203ENST00000441443 NEUROD1Q13562 356 aa31.46■■■□□ 2.63
SHOX2-203ENST00000441443 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.33■■■□□ 2.61
SHOX2-203ENST00000441443 WIZO95785 1651 aa31.28■■■□□ 2.6
SHOX2-203ENST00000441443 GTF3C3Q9Y5Q9 886 aa31.26■■■□□ 2.6
SHOX2-203ENST00000441443 PABPN1Q86U42 306 aaKnown RBP eCLIP31.24■■■□□ 2.59
SHOX2-203ENST00000441443 CCER1Q8TC90 406 aaPredicted RBP31.22■■■□□ 2.59
SHOX2-203ENST00000441443 DIEXFQ68CQ4 756 aaKnown RBP31.11■■■□□ 2.57
SHOX2-203ENST00000441443 CENPBP07199 599 aaPredicted RBP31.08■■■□□ 2.57
SHOX2-203ENST00000441443 MYT1Q01538 1121 aa31.01■■■□□ 2.55
SHOX2-203ENST00000441443 BAZ1AQ9NRL2 1556 aaPredicted RBP31■■■□□ 2.55
SHOX2-203ENST00000441443 UNC13AQ9UPW8 1703 aa30.85■■■□□ 2.53
SHOX2-203ENST00000441443 TTBK1Q5TCY1 1321 aaPredicted RBP30.84■■■□□ 2.53
SHOX2-203ENST00000441443 SMARCA4P51532 1647 aa30.77■■■□□ 2.52
SHOX2-203ENST00000441443 CCDC88BA6NC98 1476 aa30.68■■■□□ 2.5
SHOX2-203ENST00000441443 YTHDC1Q96MU7 727 aaKnown RBP30.68■■■□□ 2.5
SHOX2-203ENST00000441443 TOP2AP11388 1531 aaKnown RBP30.64■■■□□ 2.5
SHOX2-203ENST00000441443 ABCC8Q09428 1581 aa30.62■■■□□ 2.49
SHOX2-203ENST00000441443 BICRAQ9NZM4 1560 aa30.55■■■□□ 2.48
SHOX2-203ENST00000441443 ZNF316A6NFI3 1004 aaPredicted RBP30.55■■■□□ 2.48
SHOX2-203ENST00000441443 SMARCA2P51531 1590 aa30.51■■■□□ 2.47
SHOX2-203ENST00000441443 EIF4G1Q04637 1599 aaKnown RBP30.43■■■□□ 2.46
SHOX2-203ENST00000441443 MIER1Q8N108 512 aa30.37■■■□□ 2.45
SHOX2-203ENST00000441443 WRNQ14191 1432 aaPredicted RBP eCLIP30.32■■■□□ 2.44
SHOX2-203ENST00000441443 SOGA1O94964 1423 aa30.31■■■□□ 2.44
SHOX2-203ENST00000441443 CEP162Q5TB80 1403 aa30.29■■■□□ 2.44
SHOX2-203ENST00000441443 UBTFP17480 764 aaKnown RBP30.26■■■□□ 2.43
SHOX2-203ENST00000441443 RUSC2Q8N2Y8 1516 aa30.18■■■□□ 2.42
SHOX2-203ENST00000441443 CSRNP3Q8WYN3 585 aa30.16■■■□□ 2.42
SHOX2-203ENST00000441443 ATAD2BQ9ULI0 1458 aa30.14■■■□□ 2.42
SHOX2-203ENST00000441443 BAZ1BQ9UIG0 1483 aaKnown RBP30.12■■■□□ 2.41
SHOX2-203ENST00000441443 HNRNPUL2Q1KMD3 747 aaKnown RBP30.09■■■□□ 2.41
SHOX2-203ENST00000441443 TNIKQ9UKE5 1360 aa30.06■■■□□ 2.4
SHOX2-203ENST00000441443 RANGAP1P46060 587 aaPredicted RBP30.03■■■□□ 2.4
SHOX2-203ENST00000441443 PEG3Q9GZU2 1588 aa29.98■■■□□ 2.39
SHOX2-203ENST00000441443 SYNJ1O43426 1573 aa29.84■■■□□ 2.37
SHOX2-203ENST00000441443 EEA1Q15075 1411 aa29.82■■■□□ 2.36
SHOX2-203ENST00000441443 SUPT16HQ9Y5B9 1047 aaKnown RBP29.78■■■□□ 2.36
SHOX2-203ENST00000441443 GOLGA3Q08378 1498 aa29.74■■■□□ 2.35
SHOX2-203ENST00000441443 CEP164Q9UPV0 1460 aa29.59■■■□□ 2.33
SHOX2-203ENST00000441443 TSHZ2Q9NRE2 1034 aa29.58■■■□□ 2.33
SHOX2-203ENST00000441443 CLSPNQ9HAW4 1339 aa29.56■■■□□ 2.32
SHOX2-203ENST00000441443 APLP2Q06481 763 aa29.54■■■□□ 2.32
SHOX2-203ENST00000441443 RAPGEF2Q9Y4G8 1499 aa29.53■■■□□ 2.32
SHOX2-203ENST00000441443 CLIP1P30622 1438 aa29.52■■■□□ 2.32
SHOX2-203ENST00000441443 NCAPD3P42695 1498 aa29.51■■■□□ 2.31
SHOX2-203ENST00000441443 ANP32EQ9BTT0 268 aa29.48■■■□□ 2.31
SHOX2-203ENST00000441443 VPS8Q8N3P4 1428 aa29.43■■■□□ 2.3
SHOX2-203ENST00000441443 TOP2BQ02880 1626 aa29.38■■■□□ 2.29
SHOX2-203ENST00000441443 HMGXB3Q12766 1538 aa29.37■■■□□ 2.29
SHOX2-203ENST00000441443 DHX57Q6P158 1386 aaKnown RBP29.37■■■□□ 2.29
SHOX2-203ENST00000441443 KIF21BO75037 1637 aa29.36■■■□□ 2.29
SHOX2-203ENST00000441443 BCANQ96GW7 911 aa29.3■■■□□ 2.28
SHOX2-203ENST00000441443 KCNH8Q96L42 1107 aa29.29■■■□□ 2.28
SHOX2-203ENST00000441443 CUX1P39880 1505 aa29.28■■■□□ 2.28
SHOX2-203ENST00000441443 BCL11AQ9H165 835 aa29.26■■■□□ 2.27
SHOX2-203ENST00000441443 CFTRP13569 1480 aa29.23■■■□□ 2.27
SHOX2-203ENST00000441443 BIVM-ERCC5R4GMW8 1640 aa29.18■■■□□ 2.26
SHOX2-203ENST00000441443 KIF27Q86VH2 1401 aa29.17■■■□□ 2.26
SHOX2-203ENST00000441443 FKBP8Q14318 412 aa29.1■■■□□ 2.25
SHOX2-203ENST00000441443 KANK4Q5T7N3 995 aaPredicted RBP29.1■■■□□ 2.25
SHOX2-203ENST00000441443 PRXQ9BXM0 1461 aa29.09■■■□□ 2.25
SHOX2-203ENST00000441443 CADPSQ9ULU8 1353 aa29.09■■■□□ 2.25
SHOX2-203ENST00000441443 CUX2O14529 1486 aa29.04■■■□□ 2.24
SHOX2-203ENST00000441443 CC2D2AQ9P2K1 1620 aa29.02■■■□□ 2.24
SHOX2-203ENST00000441443 ITGAEP38570 1179 aa29■■■□□ 2.23
SHOX2-203ENST00000441443 ERICH3Q5RHP9 1530 aa28.95■■■□□ 2.22
SHOX2-203ENST00000441443 ARAP1Q96P48 1450 aa28.93■■■□□ 2.22
SHOX2-203ENST00000441443 RBM19Q9Y4C8 960 aaKnown RBP28.92■■■□□ 2.22
SHOX2-203ENST00000441443 P3H3Q8IVL6 736 aa28.91■■■□□ 2.22
SHOX2-203ENST00000441443 DDX10Q13206 875 aaKnown RBP28.9■■■□□ 2.22
SHOX2-203ENST00000441443 ATP1B4Q9UN42 357 aaPredicted RBP28.9■■■□□ 2.22
SHOX2-203ENST00000441443 IGF1RP08069 1367 aa28.89■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms