Protein–RNA interactions for Protein: A0A0B4J274

TRAV20, T-cell receptor alpha variable 20 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV20A0A0B4J274 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
TRAV20A0A0B4J274 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TRAV20A0A0B4J274 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC22.3■■□□□ 1.16
TRAV20A0A0B4J274 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TRAV20A0A0B4J274 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TRAV20A0A0B4J274 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TRAV20A0A0B4J274 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC22.29■■□□□ 1.16
TRAV20A0A0B4J274 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TRAV20A0A0B4J274 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TRAV20A0A0B4J274 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TRAV20A0A0B4J274 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC22.28■■□□□ 1.16
TRAV20A0A0B4J274 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC22.28■■□□□ 1.16
TRAV20A0A0B4J274 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC22.27■■□□□ 1.16
TRAV20A0A0B4J274 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC22.27■■□□□ 1.16
TRAV20A0A0B4J274 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
TRAV20A0A0B4J274 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRAV20A0A0B4J274 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC22.27■■□□□ 1.16
TRAV20A0A0B4J274 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC22.27■■□□□ 1.16
TRAV20A0A0B4J274 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC22.26■■□□□ 1.15
TRAV20A0A0B4J274 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TRAV20A0A0B4J274 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC22.26■■□□□ 1.15
TRAV20A0A0B4J274 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
TRAV20A0A0B4J274 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
TRAV20A0A0B4J274 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
TRAV20A0A0B4J274 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TRAV20A0A0B4J274 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
TRAV20A0A0B4J274 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC22.24■■□□□ 1.15
TRAV20A0A0B4J274 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TRAV20A0A0B4J274 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
TRAV20A0A0B4J274 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
TRAV20A0A0B4J274 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
TRAV20A0A0B4J274 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
TRAV20A0A0B4J274 PVT1-219ENST00000523427 938 ntTSL 3 BASIC22.2■■□□□ 1.14
TRAV20A0A0B4J274 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC22.2■■□□□ 1.14
TRAV20A0A0B4J274 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
TRAV20A0A0B4J274 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
TRAV20A0A0B4J274 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
TRAV20A0A0B4J274 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
TRAV20A0A0B4J274 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
TRAV20A0A0B4J274 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC22.19■■□□□ 1.14
TRAV20A0A0B4J274 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC22.19■■□□□ 1.14
TRAV20A0A0B4J274 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TRAV20A0A0B4J274 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TRAV20A0A0B4J274 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC22.18■■□□□ 1.14
TRAV20A0A0B4J274 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
TRAV20A0A0B4J274 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TRAV20A0A0B4J274 ZNRF2P2-203ENST00000454624 420 ntBASIC22.17■■□□□ 1.14
TRAV20A0A0B4J274 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
TRAV20A0A0B4J274 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TRAV20A0A0B4J274 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TRAV20A0A0B4J274 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
TRAV20A0A0B4J274 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TRAV20A0A0B4J274 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TRAV20A0A0B4J274 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TRAV20A0A0B4J274 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TRAV20A0A0B4J274 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC22.15■■□□□ 1.14
TRAV20A0A0B4J274 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
TRAV20A0A0B4J274 DUX4L29-201ENST00000425409 679 ntBASIC22.15■■□□□ 1.14
TRAV20A0A0B4J274 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC22.14■■□□□ 1.14
TRAV20A0A0B4J274 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
TRAV20A0A0B4J274 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
TRAV20A0A0B4J274 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
TRAV20A0A0B4J274 HGH1-207ENST00000628266 258 ntTSL 5 BASIC22.14■■□□□ 1.13
TRAV20A0A0B4J274 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC22.14■■□□□ 1.13
TRAV20A0A0B4J274 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
TRAV20A0A0B4J274 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC22.13■■□□□ 1.13
TRAV20A0A0B4J274 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC22.13■■□□□ 1.13
TRAV20A0A0B4J274 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
TRAV20A0A0B4J274 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC22.12■■□□□ 1.13
TRAV20A0A0B4J274 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC22.12■■□□□ 1.13
TRAV20A0A0B4J274 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC22.12■■□□□ 1.13
TRAV20A0A0B4J274 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TRAV20A0A0B4J274 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TRAV20A0A0B4J274 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC22.11■■□□□ 1.13
TRAV20A0A0B4J274 AC108673.1-201ENST00000510422 1159 ntBASIC22.11■■□□□ 1.13
TRAV20A0A0B4J274 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TRAV20A0A0B4J274 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC22.11■■□□□ 1.13
TRAV20A0A0B4J274 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC22.1■■□□□ 1.13
TRAV20A0A0B4J274 HLA-V-202ENST00000446817 847 ntBASIC22.1■■□□□ 1.13
TRAV20A0A0B4J274 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
TRAV20A0A0B4J274 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
TRAV20A0A0B4J274 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
TRAV20A0A0B4J274 CIB2-204ENST00000557846 934 ntTSL 3 BASIC22.09■■□□□ 1.13
TRAV20A0A0B4J274 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC22.08■■□□□ 1.13
TRAV20A0A0B4J274 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
TRAV20A0A0B4J274 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
TRAV20A0A0B4J274 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC22.07■■□□□ 1.12
TRAV20A0A0B4J274 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC22.07■■□□□ 1.12
TRAV20A0A0B4J274 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
TRAV20A0A0B4J274 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TRAV20A0A0B4J274 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC22.06■■□□□ 1.12
TRAV20A0A0B4J274 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
TRAV20A0A0B4J274 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TRAV20A0A0B4J274 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TRAV20A0A0B4J274 MBP-237ENST00000579129 1052 ntTSL 5 BASIC22.05■■□□□ 1.12
TRAV20A0A0B4J274 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC22.05■■□□□ 1.12
TRAV20A0A0B4J274 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TRAV20A0A0B4J274 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TRAV20A0A0B4J274 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
TRAV20A0A0B4J274 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms