Protein–RNA interactions for Protein: A0A0B4J274

TRAV20, T-cell receptor alpha variable 20 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV20A0A0B4J274 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC28.42■■■□□ 2.14
TRAV20A0A0B4J274 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC27.94■■■□□ 2.06
TRAV20A0A0B4J274 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
TRAV20A0A0B4J274 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC27.6■■■□□ 2.01
TRAV20A0A0B4J274 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
TRAV20A0A0B4J274 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
TRAV20A0A0B4J274 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC27.47■■□□□ 1.99
TRAV20A0A0B4J274 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC27.42■■□□□ 1.98
TRAV20A0A0B4J274 AL356512.1-201ENST00000607453 1739 ntBASIC27.26■■□□□ 1.95
TRAV20A0A0B4J274 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC27■■□□□ 1.91
TRAV20A0A0B4J274 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC26.78■■□□□ 1.88
TRAV20A0A0B4J274 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC26.66■■□□□ 1.86
TRAV20A0A0B4J274 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC26.6■■□□□ 1.85
TRAV20A0A0B4J274 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC26.59■■□□□ 1.85
TRAV20A0A0B4J274 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC26.58■■□□□ 1.84
TRAV20A0A0B4J274 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC26.57■■□□□ 1.84
TRAV20A0A0B4J274 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC26.55■■□□□ 1.84
TRAV20A0A0B4J274 HES6-203ENST00000409160 1600 ntTSL 2 BASIC26.5■■□□□ 1.83
TRAV20A0A0B4J274 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC26.34■■□□□ 1.81
TRAV20A0A0B4J274 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.8
TRAV20A0A0B4J274 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
TRAV20A0A0B4J274 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
TRAV20A0A0B4J274 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC26.21■■□□□ 1.79
TRAV20A0A0B4J274 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
TRAV20A0A0B4J274 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC26.12■■□□□ 1.77
TRAV20A0A0B4J274 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
TRAV20A0A0B4J274 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC26■■□□□ 1.75
TRAV20A0A0B4J274 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
TRAV20A0A0B4J274 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
TRAV20A0A0B4J274 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC25.87■■□□□ 1.73
TRAV20A0A0B4J274 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC25.86■■□□□ 1.73
TRAV20A0A0B4J274 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
TRAV20A0A0B4J274 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
TRAV20A0A0B4J274 INO80B-203ENST00000409917 796 ntTSL 2 BASIC25.64■■□□□ 1.7
TRAV20A0A0B4J274 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
TRAV20A0A0B4J274 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
TRAV20A0A0B4J274 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
TRAV20A0A0B4J274 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
TRAV20A0A0B4J274 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC25.42■■□□□ 1.66
TRAV20A0A0B4J274 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC25.4■■□□□ 1.66
TRAV20A0A0B4J274 AC006077.2-201ENST00000623591 457 ntBASIC25.35■■□□□ 1.65
TRAV20A0A0B4J274 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC25.33■■□□□ 1.65
TRAV20A0A0B4J274 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC25.33■■□□□ 1.65
TRAV20A0A0B4J274 AC015813.7-201ENST00000623294 581 ntBASIC25.33■■□□□ 1.65
TRAV20A0A0B4J274 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC25.3■■□□□ 1.64
TRAV20A0A0B4J274 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC25.3■■□□□ 1.64
TRAV20A0A0B4J274 ZNRF2P1-201ENST00000441407 443 ntBASIC25.28■■□□□ 1.64
TRAV20A0A0B4J274 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
TRAV20A0A0B4J274 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC25.27■■□□□ 1.64
TRAV20A0A0B4J274 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
TRAV20A0A0B4J274 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC25.22■■□□□ 1.63
TRAV20A0A0B4J274 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
TRAV20A0A0B4J274 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
TRAV20A0A0B4J274 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
TRAV20A0A0B4J274 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
TRAV20A0A0B4J274 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
TRAV20A0A0B4J274 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
TRAV20A0A0B4J274 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC24.97■■□□□ 1.59
TRAV20A0A0B4J274 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.58
TRAV20A0A0B4J274 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC24.89■■□□□ 1.57
TRAV20A0A0B4J274 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
TRAV20A0A0B4J274 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
TRAV20A0A0B4J274 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
TRAV20A0A0B4J274 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
TRAV20A0A0B4J274 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
TRAV20A0A0B4J274 AP002365.1-201ENST00000603448 772 ntBASIC24.65■■□□□ 1.54
TRAV20A0A0B4J274 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
TRAV20A0A0B4J274 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
TRAV20A0A0B4J274 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
TRAV20A0A0B4J274 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
TRAV20A0A0B4J274 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC24.6■■□□□ 1.53
TRAV20A0A0B4J274 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC24.58■■□□□ 1.53
TRAV20A0A0B4J274 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC24.57■■□□□ 1.52
TRAV20A0A0B4J274 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC24.56■■□□□ 1.52
TRAV20A0A0B4J274 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
TRAV20A0A0B4J274 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC24.54■■□□□ 1.52
TRAV20A0A0B4J274 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
TRAV20A0A0B4J274 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC24.52■■□□□ 1.52
TRAV20A0A0B4J274 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
TRAV20A0A0B4J274 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
TRAV20A0A0B4J274 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC24.51■■□□□ 1.51
TRAV20A0A0B4J274 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
TRAV20A0A0B4J274 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC24.5■■□□□ 1.51
TRAV20A0A0B4J274 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
TRAV20A0A0B4J274 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC24.46■■□□□ 1.51
TRAV20A0A0B4J274 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
TRAV20A0A0B4J274 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC24.45■■□□□ 1.5
TRAV20A0A0B4J274 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC24.43■■□□□ 1.5
TRAV20A0A0B4J274 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
TRAV20A0A0B4J274 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC24.43■■□□□ 1.5
TRAV20A0A0B4J274 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC24.41■■□□□ 1.5
TRAV20A0A0B4J274 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC24.39■■□□□ 1.49
TRAV20A0A0B4J274 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
TRAV20A0A0B4J274 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC24.35■■□□□ 1.49
TRAV20A0A0B4J274 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
TRAV20A0A0B4J274 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
TRAV20A0A0B4J274 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC24.33■■□□□ 1.49
TRAV20A0A0B4J274 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC24.33■■□□□ 1.49
TRAV20A0A0B4J274 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC24.33■■□□□ 1.48
TRAV20A0A0B4J274 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 11.8 ms