Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 USP3-204ENST00000540797 5474 ntTSL 2 BASIC14.08□□□□□ -0.164e-9■■■□□ 17.4
SMNDC1O75940 USP3-203ENST00000538686 2077 ntTSL 1 (best)14.04□□□□□ -0.164e-9■■■□□ 17.4
SMNDC1O75940 GORASP2-202ENST00000442798 1976 ntTSL 213.51□□□□□ -0.254e-9■■■□□ 17.4
SMNDC1O75940 OGFR-202ENST00000370461 4506 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.312e-6■■■□□ 17.4
SMNDC1O75940 USP3-221ENST00000561442 542 ntTSL 512.79□□□□□ -0.364e-9■■■□□ 17.4
SMNDC1O75940 USP3-205ENST00000557884 958 ntTSL 312.79□□□□□ -0.364e-9■■■□□ 17.4
SMNDC1O75940 USP3-206ENST00000558157 2439 ntTSL 1 (best)11.98□□□□□ -0.494e-9■■■□□ 17.4
SMNDC1O75940 GORASP2-209ENST00000493692 951 ntTSL 511.9□□□□□ -0.54e-9■■■□□ 17.4
SMNDC1O75940 USP3-213ENST00000559711 1693 ntTSL 5 BASIC11.84□□□□□ -0.514e-9■■■□□ 17.4
SMNDC1O75940 USP3-202ENST00000380324 2333 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.544e-9■■■□□ 17.4
SMNDC1O75940 USP3-211ENST00000559257 2217 ntTSL 59.67□□□□□ -0.864e-9■■■□□ 17.4
SMNDC1O75940 USP3-219ENST00000561326 543 ntTSL 49.29□□□□□ -0.924e-9■■■□□ 17.4
SMNDC1O75940 USP3-216ENST00000559873 584 ntTSL 58.96□□□□□ -0.984e-9■■■□□ 17.4
SMNDC1O75940 USP3-208ENST00000558285 1742 ntTSL 1 (best) BASIC8.37□□□□□ -1.074e-9■■■□□ 17.4
SMNDC1O75940 USP3-201ENST00000268049 5311 ntTSL 5 BASIC7.86□□□□□ -1.154e-9■■■□□ 17.4
SMNDC1O75940 USP3-217ENST00000560070 545 ntTSL 47.68□□□□□ -1.184e-9■■■□□ 17.4
SMNDC1O75940 GORASP2-206ENST00000471559 812 ntTSL 47.66□□□□□ -1.184e-9■■■□□ 17.4
SMNDC1O75940 USP3-210ENST00000559192 5499 ntTSL 1 (best)7.4□□□□□ -1.234e-9■■■□□ 17.4
SMNDC1O75940 USP3-215ENST00000559771 561 ntTSL 45.28□□□□□ -1.564e-9■■■□□ 17.4
SMNDC1O75940 USP3-209ENST00000558925 501 ntTSL 32.79□□□□□ -1.964e-9■■■□□ 17.4
SMNDC1O75940 LINC01089-206ENST00000537157 479 ntTSL 220.77■□□□□ 0.922e-6■■■□□ 17.4
SMNDC1O75940 RHOF-207ENST00000546227 1219 ntTSL 519.54■□□□□ 0.722e-6■■■□□ 17.4
SMNDC1O75940 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.17■□□□□ 0.662e-6■■■□□ 17.4
SMNDC1O75940 LINC01089-201ENST00000428029 1024 ntTSL 217■□□□□ 0.312e-6■■■□□ 17.4
SMNDC1O75940 LINC01089-210ENST00000543167 1059 ntTSL 215.84■□□□□ 0.132e-6■■■□□ 17.4
SMNDC1O75940 RHOF-206ENST00000545544 826 ntTSL 514.83□□□□□ -0.042e-6■■■□□ 17.4
SMNDC1O75940 RHOF-205ENST00000541657 1626 ntTSL 514.69□□□□□ -0.062e-6■■■□□ 17.4
SMNDC1O75940 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC13.79□□□□□ -0.22e-6■■■□□ 17.4
SMNDC1O75940 LINC01089-208ENST00000541694 875 ntTSL 213.29□□□□□ -0.282e-6■■■□□ 17.4
SMNDC1O75940 PIP5K1C-208ENST00000637724 435 ntTSL 318.17■□□□□ 0.53e-6■■■□□ 17.4
SMNDC1O75940 TYK2-213ENST00000529739 842 ntTSL 215.56■□□□□ 0.084e-7■■■□□ 17.4
SMNDC1O75940 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.144e-7■■■□□ 17.4
SMNDC1O75940 TYK2-202ENST00000524462 3456 ntTSL 1 (best) BASIC12.6□□□□□ -0.394e-7■■■□□ 17.4
SMNDC1O75940 TYK2-201ENST00000264818 3971 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.54e-7■■■□□ 17.4
SMNDC1O75940 TYK2-221ENST00000592137 536 ntTSL 311.86□□□□□ -0.514e-7■■■□□ 17.4
SMNDC1O75940 TYK2-215ENST00000530560 558 ntTSL 310.49□□□□□ -0.734e-7■■■□□ 17.4
SMNDC1O75940 TYK2-208ENST00000527481 628 ntTSL 38.22□□□□□ -1.094e-7■■■□□ 17.4
SMNDC1O75940 MICALL2-207ENST00000471899 899 ntTSL 214.08□□□□□ -0.162e-6■■■□□ 17.4
SMNDC1O75940 BCAR1-213ENST00000563323 558 ntTSL 318.39■□□□□ 0.531e-6■■■□□ 17.4
SMNDC1O75940 BCAR1-215ENST00000564028 558 ntTSL 414.28□□□□□ -0.121e-6■■■□□ 17.4
SMNDC1O75940 BCAR1-221ENST00000569006 574 ntTSL 413.31□□□□□ -0.281e-6■■■□□ 17.4
SMNDC1O75940 BCAR1-220ENST00000568864 556 ntTSL 413.08□□□□□ -0.321e-6■■■□□ 17.4
SMNDC1O75940 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.2■□□□□ 0.024e-8■■■□□ 17.4
SMNDC1O75940 MYL6-216ENST00000550184 1564 ntTSL 513.65□□□□□ -0.224e-8■■■□□ 17.4
SMNDC1O75940 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC12.93□□□□□ -0.344e-8■■■□□ 17.4
SMNDC1O75940 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.494e-8■■■□□ 17.4
SMNDC1O75940 MYL6-210ENST00000548400 573 ntTSL 3 BASIC11.44□□□□□ -0.584e-8■■■□□ 17.4
SMNDC1O75940 MYL6-215ENST00000549566 685 ntTSL 2 BASIC11.44□□□□□ -0.584e-8■■■□□ 17.4
SMNDC1O75940 MYL6-206ENST00000547408 683 ntTSL 3 BASIC8.51□□□□□ -1.054e-8■■■□□ 17.4
SMNDC1O75940 MYL6-205ENST00000546845 452 ntTSL 38.17□□□□□ -1.14e-8■■■□□ 17.4
SMNDC1O75940 MYL6-207ENST00000547649 655 ntAPPRIS ALT1 TSL 1 (best) BASIC7.85□□□□□ -1.154e-8■■■□□ 17.4
SMNDC1O75940 MYL6-201ENST00000293422 664 ntAPPRIS ALT1 TSL 2 BASIC7.42□□□□□ -1.224e-8■■■□□ 17.4
SMNDC1O75940 MYL6-211ENST00000548580 528 ntTSL 2 BASIC6.74□□□□□ -1.334e-8■■■□□ 17.4
SMNDC1O75940 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.89□□□□□ -1.474e-8■■■□□ 17.4
SMNDC1O75940 ARFRP1-204ENST00000609537 593 ntTSL 312.74□□□□□ -0.377e-7■■■□□ 17.4
SMNDC1O75940 HNRNPH1-226ENST00000515446 368 ntTSL 213.59□□□□□ -0.234e-10■■■□□ 17.4
SMNDC1O75940 HNRNPA2B1-203ENST00000360787 1724 ntTSL 515.25■□□□□ 0.033e-9■■■□□ 17.3
SMNDC1O75940 HNRNPA2B1-204ENST00000463181 6284 ntTSL 214.37□□□□□ -0.113e-9■■■□□ 17.3
SMNDC1O75940 HNRNPA2B1-208ENST00000618183 3539 ntTSL 5 BASIC11.15□□□□□ -0.623e-9■■■□□ 17.3
SMNDC1O75940 HNRNPA2B1-205ENST00000476233 1220 ntTSL 1 (best)9.13□□□□□ -0.953e-9■■■□□ 17.3
SMNDC1O75940 HNRNPA2B1-201ENST00000354667 3664 ntAPPRIS ALT1 TSL 1 (best) BASIC8.05□□□□□ -1.123e-9■■■□□ 17.3
SMNDC1O75940 SCART1-204ENST00000482993 4904 ntTSL 219.58■□□□□ 0.737e-7■■■□□ 17.3
SMNDC1O75940 SCART1-205ENST00000488261 4709 ntTSL 219.56■□□□□ 0.727e-7■■■□□ 17.3
SMNDC1O75940 SCART1-202ENST00000463137 4756 ntTSL 219.22■□□□□ 0.677e-7■■■□□ 17.3
SMNDC1O75940 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.257e-7■■■□□ 17.3
SMNDC1O75940 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.152e-6■■■□□ 17.3
SMNDC1O75940 SNORD35A-201ENST00000363389 86 ntBASIC5.72□□□□□ -1.492e-87■■■□□ 17.3
SMNDC1O75940 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.36■□□□□ 0.051e-6■■■□□ 17.3
SMNDC1O75940 SDF4-205ENST00000465727 2095 ntTSL 221.3■■□□□ 12e-6■■■□□ 17.2
SMNDC1O75940 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.972e-6■■■□□ 17.2
SMNDC1O75940 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.32e-6■■■□□ 17.2
SMNDC1O75940 SDF4-203ENST00000403997 728 ntTSL 311.99□□□□□ -0.492e-6■■■□□ 17.2
SMNDC1O75940 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.896e-25■■■□□ 17.2
SMNDC1O75940 PRPF39-202ENST00000424478 3174 ntTSL 212□□□□□ -0.496e-25■■■□□ 17.2
SMNDC1O75940 PRPF39-203ENST00000477626 3507 ntTSL 211.38□□□□□ -0.596e-25■■■□□ 17.2
SMNDC1O75940 SNORD127-201ENST00000458892 86 ntBASIC5.21□□□□□ -1.586e-25■■■□□ 17.2
SMNDC1O75940 PRPF39-208ENST00000554785 2121 ntTSL 22.8□□□□□ -1.966e-25■■■□□ 17.2
SMNDC1O75940 PRPF39-207ENST00000554439 2982 ntTSL 52.78□□□□□ -1.966e-25■■■□□ 17.2
SMNDC1O75940 PRPF39-206ENST00000554429 2977 ntTSL 52.59□□□□□ -1.996e-25■■■□□ 17.2
SMNDC1O75940 PRPF39-205ENST00000554081 3223 ntTSL 52.4□□□□□ -2.036e-25■■■□□ 17.2
SMNDC1O75940 RPL10-208ENST00000449494 622 ntTSL 513.33□□□□□ -0.289e-12■■■□□ 17.2
SMNDC1O75940 RPL10-205ENST00000427682 457 ntTSL 59.22□□□□□ -0.939e-12■■■□□ 17.2
SMNDC1O75940 RPL10-206ENST00000428169 292 ntTSL 58.8□□□□□ -19e-12■■■□□ 17.2
SMNDC1O75940 TRIM11-203ENST00000475775 693 ntTSL 213.34□□□□□ -0.276e-6■■■□□ 17.2
SMNDC1O75940 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.562e-6■■■□□ 17.2
SMNDC1O75940 SLC38A10-207ENST00000542075 2903 ntTSL 215.25■□□□□ 0.032e-6■■■□□ 17.2
SMNDC1O75940 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.032e-6■■■□□ 17.2
SMNDC1O75940 HCFC1-204ENST00000461098 379 ntTSL 510.72□□□□□ -0.692e-19■■■□□ 17.2
SMNDC1O75940 GRK2-214ENST00000534651 424 ntTSL 312.34□□□□□ -0.437e-7■■■□□ 17.2
SMNDC1O75940 EGFL7-206ENST00000492002 654 ntTSL 521.04■□□□□ 0.962e-7■■■□□ 17.2
SMNDC1O75940 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.482e-7■■■□□ 17.2
SMNDC1O75940 LTB4R2-203ENST00000530080 1108 ntTSL 1 (best)25.67■■□□□ 1.74e-7■■■□□ 17.2
SMNDC1O75940 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.64e-7■■■□□ 17.2
SMNDC1O75940 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.974e-7■■■□□ 17.2
SMNDC1O75940 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.794e-7■■■□□ 17.2
SMNDC1O75940 LTB4R2-202ENST00000528054 3092 ntBASIC19.88■□□□□ 0.774e-7■■■□□ 17.2
SMNDC1O75940 RBCK1-212ENST00000468272 1486 ntTSL 519.04■□□□□ 0.644e-7■■■□□ 17.2
SMNDC1O75940 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.641e-6■■■□□ 17.2
SMNDC1O75940 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC18.52■□□□□ 0.554e-7■■■□□ 17.2
SMNDC1O75940 CACNA2D4-215ENST00000542340 558 ntTSL 317.96■□□□□ 0.474e-7■■■□□ 17.2
Retrieved 100 of 11,362 protein–RNA pairs in 205.3 ms