RNA–Protein interactions for RNA: ENST00000559771.5

USP3-215, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-215ENST00000559771 AEBP2Q6ZN18 517 aaPredicted RBP24.91■■□□□ 1.58
USP3-215ENST00000559771 CHIC1Q5VXU3 224 aa22.99■■□□□ 1.27
USP3-215ENST00000559771 SENP3Q9H4L4 574 aaPredicted RBP21.17■□□□□ 0.98
USP3-215ENST00000559771 PHF23Q9BUL5 403 aaPredicted RBP20.85■□□□□ 0.93
USP3-215ENST00000559771 POTEDQ86YR6 584 aa20.35■□□□□ 0.85
USP3-215ENST00000559771 FOXD1Q16676 465 aa20.01■□□□□ 0.79
USP3-215ENST00000559771 MSH5O43196 834 aa18.93■□□□□ 0.62
USP3-215ENST00000559771 PIAS4Q8N2W9 510 aaPredicted RBP18.32■□□□□ 0.52
USP3-215ENST00000559771 PPP6R1Q9UPN7 881 aa18.03■□□□□ 0.48
USP3-215ENST00000559771 ADRA2BP18089 450 aa17.83■□□□□ 0.44
USP3-215ENST00000559771 PLPPR3Q6T4P5 718 aa17.46■□□□□ 0.39
USP3-215ENST00000559771 CACNB1Q02641 598 aaPredicted RBP16.87■□□□□ 0.29
USP3-215ENST00000559771 MAPK8IP2Q13387 824 aaPredicted RBP16.73■□□□□ 0.27
USP3-215ENST00000559771 DMRT2Q9Y5R5 561 aa16.71■□□□□ 0.27
USP3-215ENST00000559771 RNF39Q9H2S5 420 aa16.19■□□□□ 0.18
USP3-215ENST00000559771 SCAF1Q9H7N4 1312 aaKnown RBP16.08■□□□□ 0.16
USP3-215ENST00000559771 DCAF8L1A6NGE4 600 aa15.93■□□□□ 0.14
USP3-215ENST00000559771 C1QBPQ07021 282 aaKnown RBP15.8■□□□□ 0.12
USP3-215ENST00000559771 HOXD11P31277 338 aaPredicted RBP15.72■□□□□ 0.11
USP3-215ENST00000559771 POTEHQ6S545 545 aa15.69■□□□□ 0.1
USP3-215ENST00000559771 DNAJC5BQ9UF47 199 aa15.33■□□□□ 0.04
USP3-215ENST00000559771 RNF216Q9NWF9 866 aaPredicted RBP15.27■□□□□ 0.04
USP3-215ENST00000559771 PPP4R3CPQ6ZMV5 832 aa15.23■□□□□ 0.03
USP3-215ENST00000559771 CNKSR2Q8WXI2 1034 aa15.13■□□□□ 0.01
USP3-215ENST00000559771 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.84□□□□□ -0.03
USP3-215ENST00000559771 DSG3P32926 999 aa14.83□□□□□ -0.04
USP3-215ENST00000559771 NISCHQ9Y2I1 1504 aa14.77□□□□□ -0.04
USP3-215ENST00000559771 SPINK5Q9NQ38 1064 aaPredicted RBP14.67□□□□□ -0.06
USP3-215ENST00000559771 U3KPZ7 1027 aaPredicted RBP14.56□□□□□ -0.08
USP3-215ENST00000559771 CAPN15O75808 1086 aa14.54□□□□□ -0.08
USP3-215ENST00000559771 SP7Q8TDD2 431 aaPredicted RBP14.22□□□□□ -0.13
USP3-215ENST00000559771 ABCB7O75027 752 aa14.19□□□□□ -0.14
USP3-215ENST00000559771 NCBP3Q53F19 620 aaKnown RBP14.19□□□□□ -0.14
USP3-215ENST00000559771 CHRDL2Q6WN34 429 aa14.19□□□□□ -0.14
USP3-215ENST00000559771 NPM3O75607 178 aaKnown RBP14.18□□□□□ -0.14
USP3-215ENST00000559771 TRHP20396 242 aaPredicted RBP14.08□□□□□ -0.16
USP3-215ENST00000559771 RBM42Q9BTD8 480 aaKnown RBP13.97□□□□□ -0.17
USP3-215ENST00000559771 ZNF219Q9P2Y4 722 aaPredicted RBP13.97□□□□□ -0.17
USP3-215ENST00000559771 SLC4A2P04920 1241 aa13.88□□□□□ -0.19
USP3-215ENST00000559771 APLP2Q06481 763 aa13.75□□□□□ -0.21
USP3-215ENST00000559771 PIP4P2Q8N4L2 257 aa13.69□□□□□ -0.22
USP3-215ENST00000559771 HAX1O00165 279 aa13.61□□□□□ -0.23
USP3-215ENST00000559771 EVX2Q03828 476 aa13.6□□□□□ -0.23
USP3-215ENST00000559771 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.57□□□□□ -0.24
USP3-215ENST00000559771 HNRNPUL2Q1KMD3 747 aaKnown RBP13.57□□□□□ -0.24
USP3-215ENST00000559771 POLA2Q14181 598 aa13.53□□□□□ -0.24
USP3-215ENST00000559771 AKT1S1Q96B36 256 aa13.53□□□□□ -0.24
USP3-215ENST00000559771 SAMD1Q6SPF0 538 aaPredicted RBP13.5□□□□□ -0.25
USP3-215ENST00000559771 REM2Q8IYK8 340 aaPredicted RBP13.47□□□□□ -0.25
USP3-215ENST00000559771 FXR2P51116 673 aaKnown RBP eCLIP13.46□□□□□ -0.25
USP3-215ENST00000559771 PITPNM1O00562 1244 aa13.35□□□□□ -0.27
USP3-215ENST00000559771 LHX8Q68G74 356 aa13.32□□□□□ -0.28
USP3-215ENST00000559771 ABCC9O60706 1549 aa13.29□□□□□ -0.28
USP3-215ENST00000559771 CCDC180Q9P1Z9 1646 aa13.27□□□□□ -0.29
USP3-215ENST00000559771 PLSCR2Q9NRY7 297 aa13.24□□□□□ -0.29
USP3-215ENST00000559771 OSCARQ8IYS5 282 aa13.15□□□□□ -0.3
USP3-215ENST00000559771 GABBR2O75899 941 aa13.11□□□□□ -0.31
USP3-215ENST00000559771 C19orf67A6NJJ6 358 aa13.06□□□□□ -0.32
USP3-215ENST00000559771 KCNA4P22459 653 aa13.03□□□□□ -0.32
USP3-215ENST00000559771 MYCNP04198 464 aaPredicted RBP13.02□□□□□ -0.33
USP3-215ENST00000559771 ATF5Q9Y2D1 282 aaPredicted RBP13.02□□□□□ -0.33
USP3-215ENST00000559771 ZBTB12Q9Y330 459 aaPredicted RBP13.02□□□□□ -0.33
USP3-215ENST00000559771 POTEIP0CG38 1075 aa12.94□□□□□ -0.34
USP3-215ENST00000559771 PRKAR2AP13861 404 aaKnown RBP12.94□□□□□ -0.34
USP3-215ENST00000559771 CLEC11AQ9Y240 323 aa12.65□□□□□ -0.38
USP3-215ENST00000559771 CHADLQ6NUI6 762 aa12.64□□□□□ -0.39
USP3-215ENST00000559771 SPDYE2BA6NHP3 402 aa12.62□□□□□ -0.39
USP3-215ENST00000559771 SPDYE6P0CI01 402 aa12.62□□□□□ -0.39
USP3-215ENST00000559771 SPDYE2Q495Y8 402 aa12.62□□□□□ -0.39
USP3-215ENST00000559771 RB1CC1Q8TDY2 1594 aa12.61□□□□□ -0.39
USP3-215ENST00000559771 SPDYE1Q8NFV5 336 aaPredicted RBP12.61□□□□□ -0.39
USP3-215ENST00000559771 OTUD5Q96G74 571 aa12.59□□□□□ -0.39
USP3-215ENST00000559771 POTEMA6NI47 508 aa12.58□□□□□ -0.4
USP3-215ENST00000559771 NACADO15069 1562 aa12.53□□□□□ -0.4
USP3-215ENST00000559771 POTEGQ6S5H5 508 aa12.52□□□□□ -0.41
USP3-215ENST00000559771 POTEB2H3BUK9 544 aa12.5□□□□□ -0.41
USP3-215ENST00000559771 CD44P16070 742 aaKnown RBP12.45□□□□□ -0.42
USP3-215ENST00000559771 SSUH2Q9Y2M2 353 aa12.44□□□□□ -0.42
USP3-215ENST00000559771 UNC13AQ9UPW8 1703 aa12.42□□□□□ -0.42
USP3-215ENST00000559771 DCBLD2Q96PD2 775 aa12.39□□□□□ -0.43
USP3-215ENST00000559771 DCAF8L2P0C7V8 631 aa12.38□□□□□ -0.43
USP3-215ENST00000559771 CLCN6P51797 869 aa12.38□□□□□ -0.43
USP3-215ENST00000559771 FOXD4L1Q9NU39 408 aa12.37□□□□□ -0.43
USP3-215ENST00000559771 MYO15BQ96JP2 1530 aa12.37□□□□□ -0.43
USP3-215ENST00000559771 MKRN4PQ13434 485 aaPredicted RBP12.35□□□□□ -0.43
USP3-215ENST00000559771 PABPN1Q86U42 306 aaKnown RBP eCLIP12.35□□□□□ -0.43
USP3-215ENST00000559771 PCDH10Q9P2E7 1040 aa12.35□□□□□ -0.43
USP3-215ENST00000559771 BICRAQ9NZM4 1560 aa12.33□□□□□ -0.44
USP3-215ENST00000559771 ZNF692Q9BU19 519 aaPredicted RBP12.31□□□□□ -0.44
USP3-215ENST00000559771 FARP1Q9Y4F1 1045 aaPredicted RBP12.31□□□□□ -0.44
USP3-215ENST00000559771 PRR29P0C7W0 189 aa12.3□□□□□ -0.44
USP3-215ENST00000559771 FBLN2P98095 1184 aa12.28□□□□□ -0.44
USP3-215ENST00000559771 LCE2DQ5TA82 110 aaPredicted RBP12.28□□□□□ -0.44
USP3-215ENST00000559771 ZNF579Q8NAF0 562 aaKnown RBP12.25□□□□□ -0.45
USP3-215ENST00000559771 ZCCHC6Q5VYS8 1495 aaKnown RBP12.24□□□□□ -0.45
USP3-215ENST00000559771 GALR2O43603 387 aaPredicted RBP12.22□□□□□ -0.45
USP3-215ENST00000559771 DCAF1Q9Y4B6 1507 aa12.2□□□□□ -0.46
USP3-215ENST00000559771 POTEJP0CG39 1038 aa12.19□□□□□ -0.46
USP3-215ENST00000559771 PELP1Q8IZL8 1130 aaKnown RBP12.16□□□□□ -0.46
USP3-215ENST00000559771 ZRANB1Q9UGI0 708 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms