RNA–Protein interactions for RNA: ENST00000560070.5

USP3-217, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-217ENST00000560070 NISCHQ9Y2I1 1504 aa20.37■□□□□ 0.85
USP3-217ENST00000560070 AEBP2Q6ZN18 517 aaPredicted RBP18.75■□□□□ 0.59
USP3-217ENST00000560070 CCDC180Q9P1Z9 1646 aa17.85■□□□□ 0.45
USP3-217ENST00000560070 ABCC9O60706 1549 aa17.82■□□□□ 0.44
USP3-217ENST00000560070 CHIC1Q5VXU3 224 aa17.43■□□□□ 0.38
USP3-217ENST00000560070 DCAF8L2P0C7V8 631 aa17.42■□□□□ 0.38
USP3-217ENST00000560070 RB1CC1Q8TDY2 1594 aa16.95■□□□□ 0.3
USP3-217ENST00000560070 NACADO15069 1562 aa16.93■□□□□ 0.3
USP3-217ENST00000560070 ZCCHC6Q5VYS8 1495 aaKnown RBP16.93■□□□□ 0.3
USP3-217ENST00000560070 PABPN1Q86U42 306 aaKnown RBP eCLIP16.83■□□□□ 0.28
USP3-217ENST00000560070 MYO15BQ96JP2 1530 aa16.77■□□□□ 0.28
USP3-217ENST00000560070 DCAF1Q9Y4B6 1507 aa16.74■□□□□ 0.27
USP3-217ENST00000560070 SCRIBQ14160 1630 aa16.52■□□□□ 0.24
USP3-217ENST00000560070 DNAJC5BQ9UF47 199 aa16.47■□□□□ 0.23
USP3-217ENST00000560070 BICRAQ9NZM4 1560 aa16.44■□□□□ 0.22
USP3-217ENST00000560070 SHROOM4Q9ULL8 1493 aa16.4■□□□□ 0.22
USP3-217ENST00000560070 UNC13AQ9UPW8 1703 aa16.36■□□□□ 0.21
USP3-217ENST00000560070 SENP3Q9H4L4 574 aaPredicted RBP16.06■□□□□ 0.16
USP3-217ENST00000560070 EIF4G1Q04637 1599 aaKnown RBP16.02■□□□□ 0.16
USP3-217ENST00000560070 CECR2Q9BXF3 1484 aa15.98■□□□□ 0.15
USP3-217ENST00000560070 CC2D2AQ9P2K1 1620 aa15.96■□□□□ 0.15
USP3-217ENST00000560070 PHF23Q9BUL5 403 aaPredicted RBP15.76■□□□□ 0.11
USP3-217ENST00000560070 MROH2BQ7Z745 1585 aa15.75■□□□□ 0.11
USP3-217ENST00000560070 ATAD2BQ9ULI0 1458 aa15.75■□□□□ 0.11
USP3-217ENST00000560070 BAZ1AQ9NRL2 1556 aaPredicted RBP15.75■□□□□ 0.11
USP3-217ENST00000560070 SMARCA4P51532 1647 aa15.72■□□□□ 0.11
USP3-217ENST00000560070 NCAPD3P42695 1498 aa15.71■□□□□ 0.11
USP3-217ENST00000560070 SMARCA2P51531 1590 aa15.63■□□□□ 0.09
USP3-217ENST00000560070 RSF1Q96T23 1441 aaPredicted RBP15.62■□□□□ 0.09
USP3-217ENST00000560070 BAZ1BQ9UIG0 1483 aaKnown RBP15.61■□□□□ 0.09
USP3-217ENST00000560070 HMGXB3Q12766 1538 aa15.52■□□□□ 0.07
USP3-217ENST00000560070 WIZO95785 1651 aa15.51■□□□□ 0.07
USP3-217ENST00000560070 SUPT5HO00267 1087 aaKnown RBP15.51■□□□□ 0.07
USP3-217ENST00000560070 PEG3Q9GZU2 1588 aa15.5■□□□□ 0.07
USP3-217ENST00000560070 POTEDQ86YR6 584 aa15.41■□□□□ 0.06
USP3-217ENST00000560070 NESP48681 1621 aa15.41■□□□□ 0.06
USP3-217ENST00000560070 ERCC6Q03468 1493 aa15.34■□□□□ 0.05
USP3-217ENST00000560070 CADPSQ9ULU8 1353 aa15.34■□□□□ 0.05
USP3-217ENST00000560070 TOP2AP11388 1531 aaKnown RBP15.33■□□□□ 0.04
USP3-217ENST00000560070 CCDC88BA6NC98 1476 aa15.27■□□□□ 0.04
USP3-217ENST00000560070 PDS5BQ9NTI5 1447 aa15.24■□□□□ 0.03
USP3-217ENST00000560070 LAMC3Q9Y6N6 1575 aa15.19■□□□□ 0.02
USP3-217ENST00000560070 CFTRP13569 1480 aa15.17■□□□□ 0.02
USP3-217ENST00000560070 FANCD2Q9BXW9 1451 aa15.13■□□□□ 0.01
USP3-217ENST00000560070 FOXD1Q16676 465 aa15.09■□□□□ 0.01
USP3-217ENST00000560070 CEP164Q9UPV0 1460 aa15.07■□□□□ 0
USP3-217ENST00000560070 CUX2O14529 1486 aa15.04■□□□□ -0
USP3-217ENST00000560070 MRC2Q9UBG0 1479 aa15.03■□□□□ -0
USP3-217ENST00000560070 KIF21AQ7Z4S6 1674 aa15□□□□□ -0.01
USP3-217ENST00000560070 THOC2Q8NI27 1593 aaKnown RBP14.95□□□□□ -0.02
USP3-217ENST00000560070 URB2Q14146 1524 aaKnown RBP14.95□□□□□ -0.02
USP3-217ENST00000560070 WDR62O43379 1518 aa14.89□□□□□ -0.03
USP3-217ENST00000560070 TOPBP1Q92547 1522 aa14.85□□□□□ -0.03
USP3-217ENST00000560070 ABCC8Q09428 1581 aa14.81□□□□□ -0.04
USP3-217ENST00000560070 SOGA1O94964 1423 aa14.78□□□□□ -0.04
USP3-217ENST00000560070 RAD54L2Q9Y4B4 1467 aa14.76□□□□□ -0.05
USP3-217ENST00000560070 DNMBPQ6XZF7 1577 aa14.76□□□□□ -0.05
USP3-217ENST00000560070 IFT140Q96RY7 1462 aa14.76□□□□□ -0.05
USP3-217ENST00000560070 TDRD9Q8NDG6 1382 aaKnown RBP14.75□□□□□ -0.05
USP3-217ENST00000560070 DNAJC5Q9H3Z4 198 aa14.75□□□□□ -0.05
USP3-217ENST00000560070 CUX1P39880 1505 aa14.75□□□□□ -0.05
USP3-217ENST00000560070 ZNF608Q9ULD9 1512 aaPredicted RBP14.75□□□□□ -0.05
USP3-217ENST00000560070 POLA1P09884 1462 aaPredicted RBP14.74□□□□□ -0.05
USP3-217ENST00000560070 AQRO60306 1485 aaKnown RBP eCLIP14.72□□□□□ -0.051e-6■■■■□ 20.3
USP3-217ENST00000560070 WRNQ14191 1432 aaPredicted RBP eCLIP14.72□□□□□ -0.05
USP3-217ENST00000560070 FGD5Q6ZNL6 1462 aa14.71□□□□□ -0.05
USP3-217ENST00000560070 PRDM2Q13029 1718 aa14.7□□□□□ -0.06
USP3-217ENST00000560070 FBLN2P98095 1184 aa14.7□□□□□ -0.06
USP3-217ENST00000560070 OSCARQ8IYS5 282 aa14.65□□□□□ -0.06
USP3-217ENST00000560070 CHMP7Q8WUX9 453 aaPredicted RBP14.59□□□□□ -0.07
USP3-217ENST00000560070 SYNJ1O43426 1573 aa14.59□□□□□ -0.07
USP3-217ENST00000560070 TARBP1Q13395 1621 aaKnown RBP14.59□□□□□ -0.07
USP3-217ENST00000560070 TRIM41Q8WV44 630 aa14.57□□□□□ -0.08
USP3-217ENST00000560070 TOP2BQ02880 1626 aa14.54□□□□□ -0.08
USP3-217ENST00000560070 ABCA10Q8WWZ4 1543 aa14.53□□□□□ -0.08
USP3-217ENST00000560070 GAPVD1Q14C86 1478 aa14.53□□□□□ -0.08
USP3-217ENST00000560070 EIF4G3O43432 1585 aaKnown RBP14.52□□□□□ -0.08
USP3-217ENST00000560070 GRIN2BQ13224 1484 aa14.52□□□□□ -0.08
USP3-217ENST00000560070 SNAPC4Q5SXM2 1469 aa14.5□□□□□ -0.09
USP3-217ENST00000560070 BIVM-ERCC5R4GMW8 1640 aa14.47□□□□□ -0.09
USP3-217ENST00000560070 IGF1RP08069 1367 aa14.43□□□□□ -0.1
USP3-217ENST00000560070 KIF27Q86VH2 1401 aa14.41□□□□□ -0.1
USP3-217ENST00000560070 MAGI1Q96QZ7 1491 aaPredicted RBP14.41□□□□□ -0.1
USP3-217ENST00000560070 SYNJ2O15056 1496 aa14.39□□□□□ -0.11
USP3-217ENST00000560070 MSH5O43196 834 aa14.39□□□□□ -0.11
USP3-217ENST00000560070 FAM9AQ8IZU1 332 aaPredicted RBP14.39□□□□□ -0.11
USP3-217ENST00000560070 FHAD1B1AJZ9 1412 aa14.37□□□□□ -0.11
USP3-217ENST00000560070 RUSC2Q8N2Y8 1516 aa14.36□□□□□ -0.11
USP3-217ENST00000560070 WDR97A6NE52 1622 aa14.36□□□□□ -0.11
USP3-217ENST00000560070 ABCA5Q8WWZ7 1642 aa14.36□□□□□ -0.11
USP3-217ENST00000560070 CYB5RLQ6IPT4 315 aa14.34□□□□□ -0.11
USP3-217ENST00000560070 CARMIL1Q5VZK9 1371 aa14.34□□□□□ -0.11
USP3-217ENST00000560070 ERICH3Q5RHP9 1530 aa14.31□□□□□ -0.12
USP3-217ENST00000560070 GRIN2AQ12879 1464 aa14.3□□□□□ -0.12
USP3-217ENST00000560070 EHMT2Q96KQ7 1210 aa14.29□□□□□ -0.12
USP3-217ENST00000560070 JPH4Q96JJ6 628 aa14.28□□□□□ -0.12
USP3-217ENST00000560070 CHD1O14646 1710 aa14.27□□□□□ -0.12
USP3-217ENST00000560070 PBRM1Q86U86 1689 aa14.27□□□□□ -0.12
USP3-217ENST00000560070 CSRNP3Q8WYN3 585 aa14.27□□□□□ -0.13
USP3-217ENST00000560070 ADAMTS12P58397 1594 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 6.2 ms