RNA–Protein interactions for RNA: ENST00000461098.1

HCFC1-204, Transcript of host cell factor C1, humanhuman

TSL 5

Gene HCFC1, Length 379 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-204ENST00000461098 NISCHQ9Y2I1 1504 aa30.54■■■□□ 2.48
HCFC1-204ENST00000461098 ABCC9O60706 1549 aa27.96■■■□□ 2.07
HCFC1-204ENST00000461098 CCDC180Q9P1Z9 1646 aa27.55■■■□□ 2
HCFC1-204ENST00000461098 DNAJC5BQ9UF47 199 aa26.7■■□□□ 1.86
HCFC1-204ENST00000461098 RB1CC1Q8TDY2 1594 aa26.41■■□□□ 1.82
HCFC1-204ENST00000461098 NACADO15069 1562 aa26.14■■□□□ 1.78
HCFC1-204ENST00000461098 PABPN1Q86U42 306 aaKnown RBP eCLIP25.98■■□□□ 1.75
HCFC1-204ENST00000461098 UNC13AQ9UPW8 1703 aa25.88■■□□□ 1.73
HCFC1-204ENST00000461098 DCAF8L2P0C7V8 631 aa25.86■■□□□ 1.73
HCFC1-204ENST00000461098 BICRAQ9NZM4 1560 aa25.75■■□□□ 1.71
HCFC1-204ENST00000461098 MYO15BQ96JP2 1530 aa25.68■■□□□ 1.7
HCFC1-204ENST00000461098 SHROOM4Q9ULL8 1493 aa25.28■■□□□ 1.64
HCFC1-204ENST00000461098 CC2D2AQ9P2K1 1620 aa25.25■■□□□ 1.63
HCFC1-204ENST00000461098 ZCCHC6Q5VYS8 1495 aaKnown RBP25.22■■□□□ 1.63
HCFC1-204ENST00000461098 CECR2Q9BXF3 1484 aa25.22■■□□□ 1.63
HCFC1-204ENST00000461098 DCAF1Q9Y4B6 1507 aa25.2■■□□□ 1.62
HCFC1-204ENST00000461098 EIF4G1Q04637 1599 aaKnown RBP25.1■■□□□ 1.61
HCFC1-204ENST00000461098 SCRIBQ14160 1630 aa25.08■■□□□ 1.6
HCFC1-204ENST00000461098 DNAJC5Q9H3Z4 198 aa24.75■■□□□ 1.55
HCFC1-204ENST00000461098 CUX2O14529 1486 aa24.26■■□□□ 1.47
HCFC1-204ENST00000461098 NCAPD3P42695 1498 aa24.18■■□□□ 1.46
HCFC1-204ENST00000461098 ERCC6Q03468 1493 aa24.11■■□□□ 1.45
HCFC1-204ENST00000461098 ATAD2BQ9ULI0 1458 aa24.04■■□□□ 1.44
HCFC1-204ENST00000461098 NESP48681 1621 aa23.94■■□□□ 1.42
HCFC1-204ENST00000461098 HMGXB3Q12766 1538 aa23.93■■□□□ 1.42
HCFC1-204ENST00000461098 SMARCA2P51531 1590 aa23.91■■□□□ 1.42
HCFC1-204ENST00000461098 SMARCA4P51532 1647 aa23.9■■□□□ 1.42
HCFC1-204ENST00000461098 THOC2Q8NI27 1593 aaKnown RBP23.77■■□□□ 1.4
HCFC1-204ENST00000461098 BAZ1BQ9UIG0 1483 aaKnown RBP23.74■■□□□ 1.39
HCFC1-204ENST00000461098 PEG3Q9GZU2 1588 aa23.69■■□□□ 1.38
HCFC1-204ENST00000461098 BAZ1AQ9NRL2 1556 aaPredicted RBP23.69■■□□□ 1.38
HCFC1-204ENST00000461098 LAMC3Q9Y6N6 1575 aa23.65■■□□□ 1.38
HCFC1-204ENST00000461098 KIF21AQ7Z4S6 1674 aa23.59■■□□□ 1.37
HCFC1-204ENST00000461098 MROH2BQ7Z745 1585 aa23.55■■□□□ 1.36
HCFC1-204ENST00000461098 PDS5BQ9NTI5 1447 aa23.51■■□□□ 1.35
HCFC1-204ENST00000461098 TRIM41Q8WV44 630 aa23.41■■□□□ 1.34
HCFC1-204ENST00000461098 CADPSQ9ULU8 1353 aa23.4■■□□□ 1.34
HCFC1-204ENST00000461098 MRC2Q9UBG0 1479 aa23.35■■□□□ 1.33
HCFC1-204ENST00000461098 WDR62O43379 1518 aa23.33■■□□□ 1.33
HCFC1-204ENST00000461098 WIZO95785 1651 aa23.23■■□□□ 1.31
HCFC1-204ENST00000461098 CEP164Q9UPV0 1460 aa23.16■■□□□ 1.3
HCFC1-204ENST00000461098 FANCD2Q9BXW9 1451 aa23.12■■□□□ 1.29
HCFC1-204ENST00000461098 CFTRP13569 1480 aa23.07■■□□□ 1.28
HCFC1-204ENST00000461098 OSCARQ8IYS5 282 aa23.07■■□□□ 1.28
HCFC1-204ENST00000461098 URB2Q14146 1524 aaKnown RBP23■■□□□ 1.27
HCFC1-204ENST00000461098 RSF1Q96T23 1441 aaPredicted RBP22.91■■□□□ 1.26
HCFC1-204ENST00000461098 TOP2AP11388 1531 aaKnown RBP22.88■■□□□ 1.25
HCFC1-204ENST00000461098 RIMBP3CA6NJZ7 1639 aa22.85■■□□□ 1.25
HCFC1-204ENST00000461098 RIMBP3BA6NNM3 1639 aa22.85■■□□□ 1.25
HCFC1-204ENST00000461098 RIMBP3Q9UFD9 1639 aa22.85■■□□□ 1.25
HCFC1-204ENST00000461098 ZNF608Q9ULD9 1512 aaPredicted RBP22.79■■□□□ 1.24
HCFC1-204ENST00000461098 PRDM2Q13029 1718 aa22.76■■□□□ 1.23
HCFC1-204ENST00000461098 IFT140Q96RY7 1462 aa22.73■■□□□ 1.23
HCFC1-204ENST00000461098 ARHGEF11O15085 1522 aa22.72■■□□□ 1.23
HCFC1-204ENST00000461098 TOPBP1Q92547 1522 aa22.66■■□□□ 1.22
HCFC1-204ENST00000461098 CCDC88BA6NC98 1476 aa22.66■■□□□ 1.22
HCFC1-204ENST00000461098 EIF4G3O43432 1585 aaKnown RBP22.6■■□□□ 1.21
HCFC1-204ENST00000461098 CYB5RLQ6IPT4 315 aa22.56■■□□□ 1.2
HCFC1-204ENST00000461098 ABCC8Q09428 1581 aa22.53■■□□□ 1.2
HCFC1-204ENST00000461098 DNMBPQ6XZF7 1577 aa22.52■■□□□ 1.2
HCFC1-204ENST00000461098 TARBP1Q13395 1621 aaKnown RBP22.52■■□□□ 1.2
HCFC1-204ENST00000461098 AQRO60306 1485 aaKnown RBP eCLIP22.51■■□□□ 1.192e-9■■■■■ 34.6
HCFC1-204ENST00000461098 CHD1O14646 1710 aa22.51■■□□□ 1.19
HCFC1-204ENST00000461098 ARAP1Q96P48 1450 aa22.49■■□□□ 1.19
HCFC1-204ENST00000461098 POLA1P09884 1462 aaPredicted RBP22.41■■□□□ 1.18
HCFC1-204ENST00000461098 TRHP20396 242 aaPredicted RBP22.38■■□□□ 1.17
HCFC1-204ENST00000461098 FBLN2P98095 1184 aa22.37■■□□□ 1.17
HCFC1-204ENST00000461098 RAD54L2Q9Y4B4 1467 aa22.34■■□□□ 1.17
HCFC1-204ENST00000461098 TDRD9Q8NDG6 1382 aaKnown RBP22.3■■□□□ 1.16
HCFC1-204ENST00000461098 CLASP1Q7Z460 1538 aa22.27■■□□□ 1.16
HCFC1-204ENST00000461098 SOGA1O94964 1423 aa22.27■■□□□ 1.16
HCFC1-204ENST00000461098 SNAPC4Q5SXM2 1469 aa22.25■■□□□ 1.15
HCFC1-204ENST00000461098 WDR97A6NE52 1622 aa22.2■■□□□ 1.14
HCFC1-204ENST00000461098 FGD5Q6ZNL6 1462 aa22.19■■□□□ 1.14
HCFC1-204ENST00000461098 SYNJ1O43426 1573 aa22.16■■□□□ 1.14
HCFC1-204ENST00000461098 MAGI1Q96QZ7 1491 aaPredicted RBP22.15■■□□□ 1.14
HCFC1-204ENST00000461098 CHMP7Q8WUX9 453 aaPredicted RBP22.15■■□□□ 1.14
HCFC1-204ENST00000461098 CUX1P39880 1505 aa22.14■■□□□ 1.13
HCFC1-204ENST00000461098 GRIN2BQ13224 1484 aa22.12■■□□□ 1.13
HCFC1-204ENST00000461098 SYNJ2O15056 1496 aa22.1■■□□□ 1.13
HCFC1-204ENST00000461098 GAPVD1Q14C86 1478 aa22.03■■□□□ 1.12
HCFC1-204ENST00000461098 PBRM1Q86U86 1689 aa22.01■■□□□ 1.11
HCFC1-204ENST00000461098 AEBP2Q6ZN18 517 aaPredicted RBP21.99■■□□□ 1.11
HCFC1-204ENST00000461098 ABCA5Q8WWZ7 1642 aa21.94■■□□□ 1.1
HCFC1-204ENST00000461098 ABCA10Q8WWZ4 1543 aa21.93■■□□□ 1.1
HCFC1-204ENST00000461098 ERCC6L2Q5T890 1561 aa21.92■■□□□ 1.1
HCFC1-204ENST00000461098 GRIN2AQ12879 1464 aa21.84■■□□□ 1.09
HCFC1-204ENST00000461098 CEP170Q5SW79 1584 aa21.82■■□□□ 1.08
HCFC1-204ENST00000461098 NUP160Q12769 1436 aa21.81■■□□□ 1.08
HCFC1-204ENST00000461098 ADAMTS12P58397 1594 aa21.78■■□□□ 1.08
HCFC1-204ENST00000461098 SHROOM2Q13796 1616 aa21.77■■□□□ 1.08
HCFC1-204ENST00000461098 WRNQ14191 1432 aaPredicted RBP eCLIP21.72■■□□□ 1.07
HCFC1-204ENST00000461098 KIF13AQ9H1H9 1805 aa21.7■■□□□ 1.06
HCFC1-204ENST00000461098 FHAD1B1AJZ9 1412 aa21.7■■□□□ 1.06
HCFC1-204ENST00000461098 TOP2BQ02880 1626 aa21.66■■□□□ 1.06
HCFC1-204ENST00000461098 BIVM-ERCC5R4GMW8 1640 aa21.66■■□□□ 1.06
HCFC1-204ENST00000461098 ERICH3Q5RHP9 1530 aa21.63■■□□□ 1.05
HCFC1-204ENST00000461098 PRG4Q92954 1404 aaPredicted RBP21.6■■□□□ 1.05
HCFC1-204ENST00000461098 JPH4Q96JJ6 628 aa21.57■■□□□ 1.04
HCFC1-204ENST00000461098 ABCC10Q5T3U5 1492 aa21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 231.7 ms